NO01G01860.2, NO01G01860.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01860.2
Unique NameNO01G01860.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3106
Alignment locationchr1:467453..470676 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:467453..470676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01860.2 vs.
Match: XP_005855809.1 (hypothetical protein NGA_0588500 [Nannochloropsis gaditana CCMP526]; EKU20556.1 hypothetical protein NGA_0588500 [Nannochloropsis gaditana CCMP526]; EWM29209.1 protein of unknown function DUF862, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 1.200e-42
Identity = 83/106 (78.30%), Postives = 98/106 (92.45%), Query Frame = 0 
Query:    1 MAASSCREVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFAQNGIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPNAYNVRK 107
            MAASS R+V+LN+YELTDE+G+GSWMRRVGLG WHTGVEVGGVEYTFAQNG+FFHVP+ P+VA+GQV++LKES+ MGEHVGSANEVHGIIN+LREEF   AY+V +
Sbjct:    1 MAASSRRDVILNVYELTDEQGTGSWMRRVGLGAWHTGVEVGGVEYTFAQNGVFFHVPKTPLVASGQVVSLKESIVMGEHVGSANEVHGIINKLREEFAAGAYHVTR 106
The following BLAST results are available for this feature:
BLAST of NO01G01860.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855809.11.200e-4278.30hypothetical protein NGA_0588500 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01860NO01G01860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01860.2NO01G01860.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01860.2.cds1NO01G01860.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01860.2.cds2NO01G01860.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01860.2 ID=NO01G01860.2|Name=NO01G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=3106bp
TCCCTCCTCCTCCTCCTCCTCCCATTAGCGGGGTTTTCCCCCCACCCATA
CTACTCAAGGGGGTCATCGTTCCTCCTCCATCTTCCTTCCCTCCTTTCCC
GCCTCCCCTGACACTCCGCGGCTCATGACCTTCAAAGCCCGTCCCCTCCT
CCAACCCTCCCATCACTGCCTCCCCCCCCTTCAGCGGGGTCTCCGCCGCG
CGCATCGCCAACAAATTCCTCGCCTCCTGCATGATTACATCCTGTCCCGG
AGCCGTCCTCGGCGTCCTCATCGGTGTCGCCAACGGGGTGTTTCGCTCCC
GATAATCTCCCAGCAGCCCCGCCGTCGCTCCTACCCCTTCCCCCCCCTGG
ACCCCAGCACCATGGGCACCCCCGAGCTTCACGATTTCCTCAAGGTCCGA
ATCAGTCACTTGGGGTGCAGGGAGGGAAAGAGGTACCCGGCGACGGATCG
AGGCAGGGTCGTTCAGTTGGTTCAATGCCTGGACCATTTGCGGGAGGCTC
TCCTGGACGAGTTTCTTATGCCTCTTCTTGTCCTGGTTCCGCATCCGATT
CTCCTCCTCGTCCCTCCTCTCCGCCTCCATCTTATCCACGCGCAAGGCTT
CAAAACGAGGGTCTAAGGCTTGTTTTTGCCCTTCCAATTTCTCATCGCCC
GTCGCGTAGAACCCAGCAGGCGCCGTCCGCTGGAAGGGGATCTCTCGCCC
GTAGTCAATGTACTTCCTCTTCTTCTCCCTCATCTTTAACTCCAAGCCGG
CCGCTTTCAGCTCTCTCCTCTTCTGCAAGGACGCCAGGCGCTTTGCTTCC
ATCAACATCTTCTCCCGTGCCTTGCGCTTGGCCTTCTTCCCCTTGGTGTT
CGCCAGACGCGCCCTCGCCTCGGACAGCATCTCCTTCTCATCTTCGTCCA
TATCGATAGGATCGGGCCTTGCGGGCTTCGTCTCCGGTGCAGGGTCAATC
TCTCCCGGACGAAGCTTGCGCGGATCGTCCTTCATCTCTCCTGACTCCAT
GTCCCCACTCCGTTGTTGCGCCGCGTCCAGTAGCCGCTCGTAGTGTTCCA
GGCACTGCGCAGGGGTCCGACCGACGATAGGGGCAATTGTCCTCCATTGC
GCTGGCAAGATCTTGGCTAAATGCAGCAACTTCTCCTCCTCCTCCCGTGT
CCATTCCGTCTTTTTGATGGCCGGGTCCAGCCATTCGTACCATCGTCCTT
TACATTGCGCGGCAGACTTACGGTTGAGCAATGAGGCGACCCGAGGCCAT
TGATTGAGGCCGTATTTCATGACGGCGGCCTTGAGGATCTCATCCTCGCT
GTTCTTCCACACCCCGCCTTTAACCATGATGCGAATCCCCATGTTTGCGG
GGTGGTTGGGCACAAGGGAGTGGCTACGAAGAACCGGGAAAAGGGTGACT
ACTATGCAAAAACTGTTGCTGCCTGTGGTGCTGGCTGGCAGAGGCGCTTT
CGAAAAGTGGGCTGCTTTCTCGGATATGTGTACGCCAAGGCGTCAGGTCT
GTGTGGATTTGTGTGCGGGAAAAAGGAAGAAAGGTGGGTGAGTATGGCTG
GTCGGGTGCAGGATAGTGGTGACACCAAGGGCCGGGGATGACTTTGTCTG
TGGCGAGGCTTCTTCTTCTTTTGGTGCATTGCAGGCCACGAGAAATAGAG
GCGGGAACATCCAAGTCCAGCAGACCCTGGCAGCACATTAGTGCAGCTGA
GTACAACATGTGTACCCAATGTCTCTCTGAGCGGTTCGTCTCGGTATGTT
TTTGACCGGGAAGCCAAAAAGGTTGTCTCACCCCCACCATCATCATTATC
GCCCAACGGGCTTCGTCAGTGCCGACCCCACTGCGAGCCTCTTCATGCCG
CACCCAGCAGCTCAACAACGCAATTATAGCCAAGGCTGAGATCCCGTTCA
GGGCAACGATAATATGTGGATTGTTGTACCTGGCCGATGGCACATGCAGA
TTTGGCTTCAAGCAAGAAGCTCTCCAATTCACAAATTCCCTCTCACATCC
GTGCCTCCCCTCCTGCTACGACAGCCAGCAAGGTACTAAGAGGCAAACCT
CCTGCGACAACAATTATAGCACCTCGTCACACAAATAAGAACAAGCCATG
GCGGCATCCTCGTGCCGGGAAGTTGTCCTCAATATTTACGAATTGACGGA
TGAGAAAGGCAGCGGTTCGTGGATGCGGCGGGTAGGCTTGGGGACATGGC
ATACAGGCGTTGAAGTAGGTGGGGTGGAGTACACGTTTGCTCAAAACGGT
ATCTTCTTTCACGTGCCGAGGATGCCGATTGTCGCGACAGGGCAGGTAAT
AACGCTGAAAGAGAGCATGCCTATGGGCGAGCACGTCGGGAGCGCCAATG
AGGTGCACGGGATCATCAATGAGCTTCGGGAGGAATTCGGGCCGAATGCG
TACAATGTGAGAAAAGGAGGGAAGGAGGCAGTGCTTAGGTGGCGGCAGAG
AGGAAGGGCATCGAAGAGCCCTCAAGAAAGCAGAACCCTCCGAATGCATG
CTGTCACATGTCTTTCTCCAAGCACTCTCACACGAAATACTATTGTTTTA
TCTCTTGTTCTTCTCTCCTCGCAGATCACCAACCGCAACTGCAACCACTT
CAGCGACGCCCTTTGCAAGACGCTGGTCGGCGCCTCAATCCCTGCTTGGG
TCAATCGCCCCGCCAAAATTGCATCTGTTTTTTCCATCGGTGTCTTTGGT
GGTCGGAATAAGAAGGAGAAGGAGGGAGAGAAGGAGGGAGGAGGGGTGAC
CAAAGCGGAGAAGGCGGCGGCGGGGAAGAGAAAAAAGTTGACGGAGGAGC
AGAAGGCACGGTTGAAAGCGATCAAAGGCAAGACGACGAGGGGTACGTAG
CGAGAGAGGACGCTTGTGGATGTGCAATGGGGGTGAGCTATTGTGGAACT
GCCTGTCCGCGCGAAGGAAAGAGGGAGCGAGGGTAAGGGGAGGGAAGGAG
AGGGTTGAATGTGTCGATTAACTGTGGTTGTTTAAAATGTATGATCAAGA
GAAGCACTGGCAGAGATAGAGGACCAAGATGTGTCAGTCGAAAAATCAGA
AAGCTAAAGGAGGAAAAGAAGGAAAAATTGTTTCGAATCAGAAGTAAATC
GGACCT
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protein sequence of NO01G01860.2

>NO01G01860.2-protein ID=NO01G01860.2-protein|Name=NO01G01860.2|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MAASSCREVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFAQN
GIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPN
AYNVRKGGKEAVLRWRQRGRASKSPQESRTLRMHAVTCLSPSTLTRNTIV
LSLVLLSSQITNRNCNHFSDALCKTLVGASIPAWVNRPAKIASVFSIGVF
GGRNKKEKEGEKEGGGVTKAEKAAAGKRKKLTEEQKARLKAIKGKTTRGT
*
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mRNA from alignment at chr1:467453..470676+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01860.2 ID=NO01G01860.2|Name=NO01G01860.2|organism=Nannochloropsis oceanica|type=mRNA|length=3224bp|location=Sequence derived from alignment at chr1:467453..470676+ (Nannochloropsis oceanica)
TCCCTCCTCCTCCTCCTCCTCCCATTAGCGGGGTTTTCCCCCCACCCATA
CTACTCAAGGGGGTCATCGTTCCTCCTCCATCTTCCTTCCCTCCTTTCCC
GCCTCCCCTGACACTCCGCGGCTCATGACCTTCAAAGCCCGTCCCCTCCT
CCAACCCTCCCATCACTGCCTCCCCCCCCTTCAGCGGGGTCTCCGCCGCG
CGCATCGCCAACAAATTCCTCGCCTCCTGCATGATTACATCCTGTCCCGG
AGCCGTCCTCGGCGTCCTCATCGGTGTCGCCAACGGGGTGTTTCGCTCCC
GATAATCTCCCAGCAGCCCCGCCGTCGCTCCTACCCCTTCCCCCCCCTGG
ACCCCAGCACCATGGGCACCCCCGAGCTTCACGATTTCCTCAAGGTCCGA
ATCAGTCACTTGGGGTGCAGGGAGGGAAAGAGGTACCCGGCGACGGATCG
AGGCAGGGTCGTTCAGTTGGTTCAATGCCTGGACCATTTGCGGGAGGCTC
TCCTGGACGAGTTTCTTATGCCTCTTCTTGTCCTGGTTCCGCATCCGATT
CTCCTCCTCGTCCCTCCTCTCCGCCTCCATCTTATCCACGCGCAAGGCTT
CAAAACGAGGGTCTAAGGCTTGTTTTTGCCCTTCCAATTTCTCATCGCCC
GTCGCGTAGAACCCAGCAGGCGCCGTCCGCTGGAAGGGGATCTCTCGCCC
GTAGTCAATGTACTTCCTCTTCTTCTCCCTCATCTTTAACTCCAAGCCGG
CCGCTTTCAGCTCTCTCCTCTTCTGCAAGGACGCCAGGCGCTTTGCTTCC
ATCAACATCTTCTCCCGTGCCTTGCGCTTGGCCTTCTTCCCCTTGGTGTT
CGCCAGACGCGCCCTCGCCTCGGACAGCATCTCCTTCTCATCTTCGTCCA
TATCGATAGGATCGGGCCTTGCGGGCTTCGTCTCCGGTGCAGGGTCAATC
TCTCCCGGACGAAGCTTGCGCGGATCGTCCTTCATCTCTCCTGACTCCAT
GTCCCCACTCCGTTGTTGCGCCGCGTCCAGTAGCCGCTCGTAGTGTTCCA
GGCACTGCGCAGGGGTCCGACCGACGATAGGGGCAATTGTCCTCCATTGC
GCTGGCAAGATCTTGGCTAAATGCAGCAACTTCTCCTCCTCCTCCCGTGT
CCATTCCGTCTTTTTGATGGCCGGGTCCAGCCATTCGTACCATCGTCCTT
TACATTGCGCGGCAGACTTACGGTTGAGCAATGAGGCGACCCGAGGCCAT
TGATTGAGGCCGTATTTCATGACGGCGGCCTTGAGGATCTCATCCTCGCT
GTTCTTCCACACCCCGCCTTTAACCATGATGCGAATCCCCATGTTTGCGG
GGTGGTTGGGCACAAGGGAGTGGCTACGAAGAACCGGGAAAAGGGTGACT
ACTATGCAAAAACTGTTGCTGCCTGTGGTGCTGGCTGGCAGAGGCGCTTT
CGAAAAGTGGGCTGCTTTCTCGGATATGTGTACGCCAAGGCGTCAGGTCT
GTGTGGATTTGTGTGCGGGAAAAAGGAAGAAAGGTGGGTGAGTATGGCTG
GTCGGGTGCAGGATAGTGGTGACACCAAGGGCCGGGGATGACTTTGTCTG
TGGCGAGGCTTCTTCTTCTTTTGGTGCATTGCAGGCCACGAGAAATAGAG
GCGGGAACATCCAAGTCCAGCAGACCCTGGCAGCACATTAGTGCAGCTGA
GTACAACATGTGTACCCAATGTCTCTCTGAGCGGTTCGTCTCGGTATGTT
TTTGACCGGGAAGCCAAAAAGGTTGTCTCACCCCCACCATCATCATTATC
GCCCAACGGGCTTCGTCAGTGCCGACCCCACTGCGAGCCTCTTCATGCCG
CACCCAGCAGCTCAACAACGCAATTATAGCCAAGGCTGAGATCCCGTTCA
GGGCAACGATAATATGTGGATTGTTGTACCTGGCCGATGGCACATGCAGA
TTTGGCTTCAAGCAAGAAGCTCTCCAATTCACAAATTCCCTCTCACATCC
GTGCCTCCCCTCCTGCTACGACAGCCAGCAAGGTACTAAGAGGCAAACCT
CCTGCGACAACAATTATAGCACCTCGTCACACAAATAAGAACAAGCCATG
GCGGCATCCTCGTGCCGGGAAGTTGTCCTCAATATTTACGAATTGACGGA
TGAGAAAGGCAGCGGTTCGTGGATGCGGCGGGTAGGCTTGGGGACATGGC
ATACAGGCGTTGAAGTAGGTGGGGTGGAGTACACGTTTGCTCAAAACGGT
ATCTTCTTTCACGTGCCGAGGATGCCGATTGTCGCGACAGGGCAGGTAAT
AACGCTGAAAGAGAGCATGCCTATGGGCGAGCACGTCGGGAGCGCCAATG
AGGTGCGTTACTTACTGCTTCCTTTCTTTTTCTTGCACATGTTTCATTTT
CCAGGGAGACAGCGCGATGAAAGAAAGGATAAGTCATCTGTATAATCTTG
CACTCATTCACATATTCTAGGTGCACGGGATCATCAATGAGCTTCGGGAG
GAATTCGGGCCGAATGCGTACAATGTGAGAAAAGGAGGGAAGGAGGCAGT
GCTTAGGTGGCGGCAGAGAGGAAGGGCATCGAAGAGCCCTCAAGAAAGCA
GAACCCTCCGAATGCATGCTGTCACATGTCTTTCTCCAAGCACTCTCACA
CGAAATACTATTGTTTTATCTCTTGTTCTTCTCTCCTCGCAGATCACCAA
CCGCAACTGCAACCACTTCAGCGACGCCCTTTGCAAGACGCTGGTCGGCG
CCTCAATCCCTGCTTGGGTCAATCGCCCCGCCAAAATTGCATCTGTTTTT
TCCATCGGTGTCTTTGGTGGTCGGAATAAGAAGGAGAAGGAGGGAGAGAA
GGAGGGAGGAGGGGTGACCAAAGCGGAGAAGGCGGCGGCGGGGAAGAGAA
AAAAGTTGACGGAGGAGCAGAAGGCACGGTTGAAAGCGATCAAAGGCAAG
ACGACGAGGGGTACGTAGCGAGAGAGGACGCTTGTGGATGTGCAATGGGG
GTGAGCTATTGTGGAACTGCCTGTCCGCGCGAAGGAAAGAGGGAGCGAGG
GTAAGGGGAGGGAAGGAGAGGGTTGAATGTGTCGATTAACTGTGGTTGTT
TAAAATGTATGATCAAGAGAAGCACTGGCAGAGATAGAGGACCAAGATGT
GTCAGTCGAAAAATCAGAAAGCTAAAGGAGGAAAAGAAGGAAAAATTGTT
TCGAATCAGAAGTAAATCGGACCT
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Coding sequence (CDS) from alignment at chr1:467453..470676+

>NO01G01860.2 ID=NO01G01860.2|Name=NO01G01860.2|organism=Nannochloropsis oceanica|type=CDS|length=753bp|location=Sequence derived from alignment at chr1:467453..470676+ (Nannochloropsis oceanica)
ATGGCGGCATCCTCGTGCCGGGAAGTTGTCCTCAATATTTACGAATTGAC
GGATGAGAAAGGCAGCGGTTCGTGGATGCGGCGGGTAGGCTTGGGGACAT
GGCATACAGGCGTTGAAGTAGGTGGGGTGGAGTACACGTTTGCTCAAAAC
GGTATCTTCTTTCACGTGCCGAGGATGCCGATTGTCGCGACAGGGCAGGT
AATAACGCTGAAAGAGAGCATGCCTATGGGCGAGCACGTCGGGAGCGCCA
ATGAGGTGCACGGGATCATCAATGAGCTTCGGGAGGAATTCGGGCCGAAT
GCGTACAATGTGAGAAAAGGAGGGAAGGAGGCAGTGCTTAGGTGGCGGCA
GAGAGGAAGGGCATCGAAGAGCCCTCAAGAAAGCAGAACCCTCCGAATGC
ATGCTGTCACATGTCTTTCTCCAAGCACTCTCACACGAAATACTATTGTT
TTATCTCTTGTTCTTCTCTCCTCGCAGATCACCAACCGCAACTGCAACCA
CTTCAGCGACGCCCTTTGCAAGACGCTGGTCGGCGCCTCAATCCCTGCTT
GGGTCAATCGCCCCGCCAAAATTGCATCTGTTTTTTCCATCGGTGTCTTT
GGTGGTCGGAATAAGAAGGAGAAGGAGGGAGAGAAGGAGGGAGGAGGGGT
GACCAAAGCGGAGAAGGCGGCGGCGGGGAAGAGAAAAAAGTTGACGGAGG
AGCAGAAGGCACGGTTGAAAGCGATCAAAGGCAAGACGACGAGGGGTACG
TAG
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Synonyms
Publications