NO01G01840.1, NO01G01840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01840.1
Unique NameNO01G01840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1224
Alignment locationchr1:466186..467409 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:466186..467409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G01840.1 vs.
Match: XP_005855805.1 (pre-mRNA-splicing factor CDC5/CEF1 [Nannochloropsis gaditana CCMP526]; EKU20552.1 pre-mRNA-splicing factor CDC5/CEF1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 388.3 bits (996), Expect = 3.000e-104
Identity = 250/421 (59.38%), Postives = 295/421 (70.07%), Query Frame = 0 
Query:    5 AGGMTPMRDELGLNQGGGGSGMEQQQQLMVMGEKRRQKMLRAQLAEGLQGLPEPQYNYEISLPELEEDGEGGKEDGMSVEEDAADRDAREAGEKRAKEEAELARRSTVLKRGLPRPIVVDPQVFQSRARATAAAAAEGDEKAAADALVQKELYAMLVHDQAKYPFVHVALGKKKGGKSSGSSGSSNGGGVDLPALPSKLLEQARALVEEEVAASRKNKNEMVNGGDGGRE--GERE--------DDDPVVVEEAWLKAYHDLAYFPNRQTFGRLTGANKQDRLAALIHQFDSLQAQGVKEGKKAGKLEARLNLATGGYGKRASNLVQGVSDVLNQIDEMRLEVGCFRRLAAIEELALRTRLAKVQGEVEGLEGREEQLQVSYVELLDERDGLFALVGG------RGEE--GINGREERMEE 408
            AGG TPMRDELGLNQ GG    E+QQQLMVM EKRRQK LRAQLAEGL+ LPE QY YEIS+P +EE+ E   + G   EEDAADRDAR A +K A EEAELARRS VLKRGLPRP +VDP +F SR RA   A AE DE AAADA+VQ+EL A+L  + AKYP V  A GK  G  S G+ G     GV LP +P ++L  AR LV EE A  RK  +    GG+GG E  G+ E        D  PV +E  WLK Y+DLAYFP RQ FGRLTGA+KQDRLAA++H+F++L     K GK+A KL+ RLNLATGGY KRA+ L+ GVS+ L+QIDEMRLEVGCFRRL A+EE AL TR+A+V  + + +  REEQLQ+SYVELLDERD LF ++ G      RGEE  G+NG+    EE
Sbjct:  454 AGGATPMRDELGLNQMGGS---EEQQQLMVMSEKRRQKALRAQLAEGLRSLPEAQYTYEISVPTMEEEEERVTDVGK--EEDAADRDARMAAKKLAVEEAELARRSAVLKRGLPRPRIVDPDMFASRVRA---ATAEADEIAAADAMVQQELLAVLRAEAAKYP-VREAGGKGNGRSSKGTDGDR---GV-LPIIPPQMLSTARDLVAEEAAKLRKAVDSY--GGEGGSEESGKGEGAGVDSQGDMCPVALERDWLKGYNDLAYFPGRQAFGRLTGASKQDRLAAVVHEFNTLAGHVEKVGKRASKLDTRLNLATGGYVKRATALLHGVSEALDQIDEMRLEVGCFRRLKAMEEKALVTRVAEVNAQADSVAKREEQLQLSYVELLDERDRLFGVLHGHEGEEDRGEEHNGLNGKVTVAEE 859
The following BLAST results are available for this feature:
BLAST of NO01G01840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855805.13.000e-10459.38pre-mRNA-splicing factor CDC5/CEF1 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01840NO01G01840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01840.1NO01G01840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01840.1.cds1NO01G01840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01840.1 ID=NO01G01840.1|Name=NO01G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp
ATGCGCAGTCGCGCGGGGGGGATGACGCCCATGAGGGACGAGTTAGGGTT
GAACCAGGGAGGGGGAGGGTCAGGGATGGAGCAGCAGCAACAGTTAATGG
TGATGGGGGAGAAGAGGCGACAGAAGATGTTGAGGGCCCAGCTGGCCGAG
GGATTGCAAGGGCTTCCTGAGCCTCAGTACAACTACGAAATCTCGCTGCC
GGAGCTGGAGGAGGATGGGGAGGGAGGGAAGGAGGATGGGATGTCTGTAG
AGGAGGATGCGGCGGACCGCGATGCACGGGAAGCTGGAGAGAAGCGGGCG
AAGGAAGAGGCGGAGCTTGCGAGGAGGTCGACGGTGTTGAAGAGGGGCCT
GCCGAGGCCGATTGTTGTGGACCCCCAAGTGTTCCAGTCGCGGGCAAGAG
CGACAGCAGCCGCAGCTGCTGAGGGAGATGAGAAGGCAGCGGCGGACGCG
CTGGTCCAGAAGGAGTTATATGCTATGTTAGTGCATGACCAAGCCAAATA
CCCTTTCGTTCACGTGGCGCTGGGGAAGAAGAAGGGAGGGAAGAGTAGCG
GCAGCAGTGGTAGTAGTAATGGAGGAGGTGTGGATCTGCCTGCACTCCCT
TCTAAGCTTTTAGAGCAAGCCCGGGCGTTGGTCGAGGAAGAGGTGGCGGC
TTCGCGCAAGAATAAAAACGAAATGGTGAATGGGGGAGACGGAGGAAGAG
AGGGAGAGAGGGAGGATGACGACCCGGTGGTGGTGGAGGAGGCTTGGTTG
AAGGCCTATCATGACCTTGCTTATTTTCCCAACAGGCAGACGTTCGGTAG
GCTGACGGGTGCAAATAAGCAGGATCGCTTAGCGGCGCTTATCCATCAAT
TTGATTCGTTGCAGGCCCAGGGAGTGAAGGAGGGGAAGAAAGCGGGGAAA
TTGGAGGCGAGGCTGAACTTGGCCACGGGGGGATATGGGAAGAGAGCGTC
GAATTTAGTGCAAGGTGTGAGTGATGTGTTGAATCAGATTGATGAGATGC
GTTTGGAGGTGGGGTGTTTTCGACGGTTGGCTGCGATTGAGGAGTTGGCG
CTGAGGACACGCTTGGCCAAGGTCCAGGGAGAGGTGGAGGGATTGGAAGG
GAGGGAGGAGCAACTGCAGGTAAGTTATGTGGAGTTATTGGACGAGAGGG
ATGGATTGTTTGCGCTTGTTGGTGGAAGAGGGGAGGAAGGGATAAATGGT
AGAGAAGAGAGGATGGAGGAATAA
back to top

protein sequence of NO01G01840.1

>NO01G01840.1-protein ID=NO01G01840.1-protein|Name=NO01G01840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MRSRAGGMTPMRDELGLNQGGGGSGMEQQQQLMVMGEKRRQKMLRAQLAE
GLQGLPEPQYNYEISLPELEEDGEGGKEDGMSVEEDAADRDAREAGEKRA
KEEAELARRSTVLKRGLPRPIVVDPQVFQSRARATAAAAAEGDEKAAADA
LVQKELYAMLVHDQAKYPFVHVALGKKKGGKSSGSSGSSNGGGVDLPALP
SKLLEQARALVEEEVAASRKNKNEMVNGGDGGREGEREDDDPVVVEEAWL
KAYHDLAYFPNRQTFGRLTGANKQDRLAALIHQFDSLQAQGVKEGKKAGK
LEARLNLATGGYGKRASNLVQGVSDVLNQIDEMRLEVGCFRRLAAIEELA
LRTRLAKVQGEVEGLEGREEQLQVSYVELLDERDGLFALVGGRGEEGING
REERMEE*
back to top

mRNA from alignment at chr1:466186..467409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01840.1 ID=NO01G01840.1|Name=NO01G01840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp|location=Sequence derived from alignment at chr1:466186..467409- (Nannochloropsis oceanica)
ATGCGCAGTCGCGCGGGGGGGATGACGCCCATGAGGGACGAGTTAGGGTT
GAACCAGGGAGGGGGAGGGTCAGGGATGGAGCAGCAGCAACAGTTAATGG
TGATGGGGGAGAAGAGGCGACAGAAGATGTTGAGGGCCCAGCTGGCCGAG
GGATTGCAAGGGCTTCCTGAGCCTCAGTACAACTACGAAATCTCGCTGCC
GGAGCTGGAGGAGGATGGGGAGGGAGGGAAGGAGGATGGGATGTCTGTAG
AGGAGGATGCGGCGGACCGCGATGCACGGGAAGCTGGAGAGAAGCGGGCG
AAGGAAGAGGCGGAGCTTGCGAGGAGGTCGACGGTGTTGAAGAGGGGCCT
GCCGAGGCCGATTGTTGTGGACCCCCAAGTGTTCCAGTCGCGGGCAAGAG
CGACAGCAGCCGCAGCTGCTGAGGGAGATGAGAAGGCAGCGGCGGACGCG
CTGGTCCAGAAGGAGTTATATGCTATGTTAGTGCATGACCAAGCCAAATA
CCCTTTCGTTCACGTGGCGCTGGGGAAGAAGAAGGGAGGGAAGAGTAGCG
GCAGCAGTGGTAGTAGTAATGGAGGAGGTGTGGATCTGCCTGCACTCCCT
TCTAAGCTTTTAGAGCAAGCCCGGGCGTTGGTCGAGGAAGAGGTGGCGGC
TTCGCGCAAGAATAAAAACGAAATGGTGAATGGGGGAGACGGAGGAAGAG
AGGGAGAGAGGGAGGATGACGACCCGGTGGTGGTGGAGGAGGCTTGGTTG
AAGGCCTATCATGACCTTGCTTATTTTCCCAACAGGCAGACGTTCGGTAG
GCTGACGGGTGCAAATAAGCAGGATCGCTTAGCGGCGCTTATCCATCAAT
TTGATTCGTTGCAGGCCCAGGGAGTGAAGGAGGGGAAGAAAGCGGGGAAA
TTGGAGGCGAGGCTGAACTTGGCCACGGGGGGATATGGGAAGAGAGCGTC
GAATTTAGTGCAAGGTGTGAGTGATGTGTTGAATCAGATTGATGAGATGC
GTTTGGAGGTGGGGTGTTTTCGACGGTTGGCTGCGATTGAGGAGTTGGCG
CTGAGGACACGCTTGGCCAAGGTCCAGGGAGAGGTGGAGGGATTGGAAGG
GAGGGAGGAGCAACTGCAGGTAAGTTATGTGGAGTTATTGGACGAGAGGG
ATGGATTGTTTGCGCTTGTTGGTGGAAGAGGGGAGGAAGGGATAAATGGT
AGAGAAGAGAGGATGGAGGAATAA
back to top

Coding sequence (CDS) from alignment at chr1:466186..467409-

>NO01G01840.1 ID=NO01G01840.1|Name=NO01G01840.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr1:466186..467409- (Nannochloropsis oceanica)
ATGCGCAGTCGCGCGGGGGGGATGACGCCCATGAGGGACGAGTTAGGGTT
GAACCAGGGAGGGGGAGGGTCAGGGATGGAGCAGCAGCAACAGTTAATGG
TGATGGGGGAGAAGAGGCGACAGAAGATGTTGAGGGCCCAGCTGGCCGAG
GGATTGCAAGGGCTTCCTGAGCCTCAGTACAACTACGAAATCTCGCTGCC
GGAGCTGGAGGAGGATGGGGAGGGAGGGAAGGAGGATGGGATGTCTGTAG
AGGAGGATGCGGCGGACCGCGATGCACGGGAAGCTGGAGAGAAGCGGGCG
AAGGAAGAGGCGGAGCTTGCGAGGAGGTCGACGGTGTTGAAGAGGGGCCT
GCCGAGGCCGATTGTTGTGGACCCCCAAGTGTTCCAGTCGCGGGCAAGAG
CGACAGCAGCCGCAGCTGCTGAGGGAGATGAGAAGGCAGCGGCGGACGCG
CTGGTCCAGAAGGAGTTATATGCTATGTTAGTGCATGACCAAGCCAAATA
CCCTTTCGTTCACGTGGCGCTGGGGAAGAAGAAGGGAGGGAAGAGTAGCG
GCAGCAGTGGTAGTAGTAATGGAGGAGGTGTGGATCTGCCTGCACTCCCT
TCTAAGCTTTTAGAGCAAGCCCGGGCGTTGGTCGAGGAAGAGGTGGCGGC
TTCGCGCAAGAATAAAAACGAAATGGTGAATGGGGGAGACGGAGGAAGAG
AGGGAGAGAGGGAGGATGACGACCCGGTGGTGGTGGAGGAGGCTTGGTTG
AAGGCCTATCATGACCTTGCTTATTTTCCCAACAGGCAGACGTTCGGTAG
GCTGACGGGTGCAAATAAGCAGGATCGCTTAGCGGCGCTTATCCATCAAT
TTGATTCGTTGCAGGCCCAGGGAGTGAAGGAGGGGAAGAAAGCGGGGAAA
TTGGAGGCGAGGCTGAACTTGGCCACGGGGGGATATGGGAAGAGAGCGTC
GAATTTAGTGCAAGGTGTGAGTGATGTGTTGAATCAGATTGATGAGATGC
GTTTGGAGGTGGGGTGTTTTCGACGGTTGGCTGCGATTGAGGAGTTGGCG
CTGAGGACACGCTTGGCCAAGGTCCAGGGAGAGGTGGAGGGATTGGAAGG
GAGGGAGGAGCAACTGCAGGTAAGTTATGTGGAGTTATTGGACGAGAGGG
ATGGATTGTTTGCGCTTGTTGGTGGAAGAGGGGAGGAAGGGATAAATGGT
AGAGAAGAGAGGATGGAGGAATAA
back to top
Synonyms
Publications