NO01G01830.1, NO01G01830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01830.1
Unique NameNO01G01830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1539
Alignment locationchr1:462433..463971 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:462433..463971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G01830.1 vs.
Match: EWM29155.1 (nad-dependent epimerase dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 778.9 bits (2010), Expect = 9.900e-222
Identity = 405/510 (79.41%), Postives = 448/510 (87.84%), Query Frame = 0 
Query:   12 NSTNDAALLVPDLQSIPTPLRAESLRQLEEVGSC-------RTSVTPATHDGSSNRSGDGSSANTSREGRTSGPGDELDDQSRASGSDLMPPTTTDESDEEDNSSLATDETGENMPHQQADAFLSVGQGSLLSPPVEGGKKVLVTGGAGFVGSHVADHLLTRGDVVILVDEFNDYYDTSLKRSNVAYLLAKHGSSRLRVVEADICDAHAMEQLFITESPKHVVHMAARAGVRPSIDDPFVYIHSNMLGTTRLLELARIHGNECFVWASSSSVYGGSSLEEFGEDDYVDNPVSPYAATKKACELMTYTYHSLYKMNVSGLRFFTVYGPRGRPDMAPFKFVDRVSRGLEIQQFGDGSSSRDYTYIDDIVDGVVRALDRPLGYQIFNLGNGSPYRLSDFIGLVEKNVGRSALIKILPDQPGDVPRTCANISKAQELLGYQPKVSFEEGIARTVDWYKGWKAEKEAMEARKKNERVEEMKKGLR--ESQGMMKGGTLEKVASTISVFSQGGLSG 513
            +S  D ALLVPD+ SIP PLRAESLR+LE VGSC       + S    T +G + RS    SA TSR  +    G+E DDQSR SGSDL+P TTTD+SDEED SSLATDET +++  + AD+FLSV +GSLL+PPVEGGKKVLVTGGAGFVGSHVADHLL+RGD V++VDEFNDYYDTSLKR+NVA+LLAKHGS+RLRVVEADICDAHAMEQLFITE P+HVVHMAARAGVRPSIDDPF+YIHSNMLGTTRLLELARIHGN+CFVWASSSSVYGGSSLEEFGEDDYVDNPVSPYAATKKACELMT+TYHSLYKMNV+GLRFFTVYGPRGRPDMAPFKFVDRVSRGLEIQQFGDGSSSRDYTYIDDIVDGVVRALDRPLGYQIFNLGNGSPYRLSDFI LVEKNVG++A+IK+LPDQPGDVPRTCANISKAQELLGYQPKVSFEEGIARTVDWYKGW+AEK +MEA K+ ++  E K G +  +S   ++ G + +VAS  SVFSQGGLSG
Sbjct:   15 SSDMDTALLVPDVTSIPMPLRAESLRKLEVVGSCNGLASTQQASGASDTGEGGNRRSSPAFSAATSRADKAENVGEENDDQSRTSGSDLVP-TTTDDSDEEDTSSLATDETPDHL-QRHADSFLSVDRGSLLAPPVEGGKKVLVTGGAGFVGSHVADHLLSRGDAVVVVDEFNDYYDTSLKRANVAHLLAKHGSARLRVVEADICDAHAMEQLFITERPRHVVHMAARAGVRPSIDDPFIYIHSNMLGTTRLLELARIHGNDCFVWASSSSVYGGSSLEEFGEDDYVDNPVSPYAATKKACELMTHTYHSLYKMNVTGLRFFTVYGPRGRPDMAPFKFVDRVSRGLEIQQFGDGSSSRDYTYIDDIVDGVVRALDRPLGYQIFNLGNGSPYRLSDFIRLVEKNVGKAAVIKVLPDQPGDVPRTCANISKAQELLGYQPKVSFEEGIARTVDWYKGWRAEK-SMEAEKEEKKTREGKAGKKADKSTKGVQPGNMARVASAASVFSQGGLSG 521
The following BLAST results are available for this feature:
BLAST of NO01G01830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29155.19.900e-22279.41nad-dependent epimerase dehydratase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01830NO01G01830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01830.1NO01G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01830.1.cds1NO01G01830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01830.1 ID=NO01G01830.1|Name=NO01G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp
ATGACGGGCAGCACCAATAACAACACCAGCCTAAACAGCACCAACGACGC
CGCACTCCTGGTGCCGGACCTCCAGAGCATCCCCACGCCTCTTCGCGCCG
AATCTCTGCGCCAGCTTGAGGAGGTGGGCTCTTGCCGAACCAGCGTTACC
CCCGCTACGCATGATGGCAGCAGCAATAGGAGCGGTGACGGCTCGTCGGC
GAACACGAGCCGGGAAGGCAGGACGTCCGGGCCAGGTGACGAGTTGGATG
ATCAATCCCGTGCTTCCGGATCCGATCTGATGCCTCCCACCACCACGGAT
GAAAGTGACGAGGAGGATAATTCTTCCCTAGCGACGGACGAGACGGGCGA
GAACATGCCTCACCAGCAAGCCGATGCCTTCCTGAGCGTGGGGCAGGGGT
CGTTGCTTTCCCCTCCGGTGGAGGGAGGGAAAAAGGTCTTAGTGACGGGG
GGAGCTGGATTTGTGGGATCGCATGTGGCGGACCATTTGTTGACAAGGGG
GGATGTCGTCATCTTGGTGGATGAGTTTAATGATTATTATGACACCTCGC
TGAAAAGATCGAATGTCGCGTATTTGTTGGCGAAGCATGGCTCGTCGAGG
CTGAGGGTGGTGGAGGCCGATATTTGTGATGCGCATGCGATGGAGCAGCT
CTTCATCACAGAGAGTCCTAAACATGTGGTGCACATGGCGGCACGGGCGG
GGGTGAGGCCCTCGATTGATGATCCATTTGTGTACATCCATTCAAATATG
TTAGGAACGACGCGCTTGTTGGAATTGGCGCGGATCCACGGGAATGAGTG
TTTTGTCTGGGCAAGTTCTAGTAGCGTGTATGGGGGCTCGAGCCTGGAAG
AATTCGGAGAGGACGATTACGTGGATAACCCCGTCTCCCCCTACGCAGCC
ACGAAGAAAGCCTGCGAGCTGATGACTTACACCTACCACTCGCTCTACAA
GATGAATGTGTCGGGTCTGCGCTTCTTCACGGTCTACGGACCGAGGGGCA
GGCCGGACATGGCTCCTTTTAAGTTTGTGGATCGGGTAAGTAGGGGGTTG
GAGATCCAGCAGTTCGGGGATGGGAGCAGCTCCAGGGACTACACCTACAT
TGATGATATTGTTGACGGGGTAGTGCGCGCCTTGGATCGTCCACTGGGAT
ATCAGATTTTCAACCTGGGCAATGGGAGTCCGTACCGGCTGAGTGATTTC
ATCGGCTTAGTGGAGAAGAATGTGGGCAGGTCGGCGTTGATCAAGATCTT
GCCGGACCAGCCGGGGGATGTCCCTAGGACATGCGCCAACATTTCGAAGG
CGCAGGAATTGCTGGGATACCAGCCCAAGGTCTCGTTTGAGGAGGGCATT
GCCAGGACGGTGGACTGGTATAAGGGTTGGAAGGCCGAGAAGGAGGCGAT
GGAGGCACGGAAAAAGAACGAGAGGGTGGAGGAGATGAAAAAGGGGTTGA
GGGAGAGTCAGGGGATGATGAAGGGTGGGACCTTGGAGAAGGTGGCATCG
ACGATCTCGGTTTTCAGCCAAGGAGGACTGAGCGGTTAG
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protein sequence of NO01G01830.1

>NO01G01830.1-protein ID=NO01G01830.1-protein|Name=NO01G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MTGSTNNNTSLNSTNDAALLVPDLQSIPTPLRAESLRQLEEVGSCRTSVT
PATHDGSSNRSGDGSSANTSREGRTSGPGDELDDQSRASGSDLMPPTTTD
ESDEEDNSSLATDETGENMPHQQADAFLSVGQGSLLSPPVEGGKKVLVTG
GAGFVGSHVADHLLTRGDVVILVDEFNDYYDTSLKRSNVAYLLAKHGSSR
LRVVEADICDAHAMEQLFITESPKHVVHMAARAGVRPSIDDPFVYIHSNM
LGTTRLLELARIHGNECFVWASSSSVYGGSSLEEFGEDDYVDNPVSPYAA
TKKACELMTYTYHSLYKMNVSGLRFFTVYGPRGRPDMAPFKFVDRVSRGL
EIQQFGDGSSSRDYTYIDDIVDGVVRALDRPLGYQIFNLGNGSPYRLSDF
IGLVEKNVGRSALIKILPDQPGDVPRTCANISKAQELLGYQPKVSFEEGI
ARTVDWYKGWKAEKEAMEARKKNERVEEMKKGLRESQGMMKGGTLEKVAS
TISVFSQGGLSG*
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mRNA from alignment at chr1:462433..463971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01830.1 ID=NO01G01830.1|Name=NO01G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp|location=Sequence derived from alignment at chr1:462433..463971- (Nannochloropsis oceanica)
ATGACGGGCAGCACCAATAACAACACCAGCCTAAACAGCACCAACGACGC
CGCACTCCTGGTGCCGGACCTCCAGAGCATCCCCACGCCTCTTCGCGCCG
AATCTCTGCGCCAGCTTGAGGAGGTGGGCTCTTGCCGAACCAGCGTTACC
CCCGCTACGCATGATGGCAGCAGCAATAGGAGCGGTGACGGCTCGTCGGC
GAACACGAGCCGGGAAGGCAGGACGTCCGGGCCAGGTGACGAGTTGGATG
ATCAATCCCGTGCTTCCGGATCCGATCTGATGCCTCCCACCACCACGGAT
GAAAGTGACGAGGAGGATAATTCTTCCCTAGCGACGGACGAGACGGGCGA
GAACATGCCTCACCAGCAAGCCGATGCCTTCCTGAGCGTGGGGCAGGGGT
CGTTGCTTTCCCCTCCGGTGGAGGGAGGGAAAAAGGTCTTAGTGACGGGG
GGAGCTGGATTTGTGGGATCGCATGTGGCGGACCATTTGTTGACAAGGGG
GGATGTCGTCATCTTGGTGGATGAGTTTAATGATTATTATGACACCTCGC
TGAAAAGATCGAATGTCGCGTATTTGTTGGCGAAGCATGGCTCGTCGAGG
CTGAGGGTGGTGGAGGCCGATATTTGTGATGCGCATGCGATGGAGCAGCT
CTTCATCACAGAGAGTCCTAAACATGTGGTGCACATGGCGGCACGGGCGG
GGGTGAGGCCCTCGATTGATGATCCATTTGTGTACATCCATTCAAATATG
TTAGGAACGACGCGCTTGTTGGAATTGGCGCGGATCCACGGGAATGAGTG
TTTTGTCTGGGCAAGTTCTAGTAGCGTGTATGGGGGCTCGAGCCTGGAAG
AATTCGGAGAGGACGATTACGTGGATAACCCCGTCTCCCCCTACGCAGCC
ACGAAGAAAGCCTGCGAGCTGATGACTTACACCTACCACTCGCTCTACAA
GATGAATGTGTCGGGTCTGCGCTTCTTCACGGTCTACGGACCGAGGGGCA
GGCCGGACATGGCTCCTTTTAAGTTTGTGGATCGGGTAAGTAGGGGGTTG
GAGATCCAGCAGTTCGGGGATGGGAGCAGCTCCAGGGACTACACCTACAT
TGATGATATTGTTGACGGGGTAGTGCGCGCCTTGGATCGTCCACTGGGAT
ATCAGATTTTCAACCTGGGCAATGGGAGTCCGTACCGGCTGAGTGATTTC
ATCGGCTTAGTGGAGAAGAATGTGGGCAGGTCGGCGTTGATCAAGATCTT
GCCGGACCAGCCGGGGGATGTCCCTAGGACATGCGCCAACATTTCGAAGG
CGCAGGAATTGCTGGGATACCAGCCCAAGGTCTCGTTTGAGGAGGGCATT
GCCAGGACGGTGGACTGGTATAAGGGTTGGAAGGCCGAGAAGGAGGCGAT
GGAGGCACGGAAAAAGAACGAGAGGGTGGAGGAGATGAAAAAGGGGTTGA
GGGAGAGTCAGGGGATGATGAAGGGTGGGACCTTGGAGAAGGTGGCATCG
ACGATCTCGGTTTTCAGCCAAGGAGGACTGAGCGGTTAG
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Coding sequence (CDS) from alignment at chr1:462433..463971-

>NO01G01830.1 ID=NO01G01830.1|Name=NO01G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr1:462433..463971- (Nannochloropsis oceanica)
ATGACGGGCAGCACCAATAACAACACCAGCCTAAACAGCACCAACGACGC
CGCACTCCTGGTGCCGGACCTCCAGAGCATCCCCACGCCTCTTCGCGCCG
AATCTCTGCGCCAGCTTGAGGAGGTGGGCTCTTGCCGAACCAGCGTTACC
CCCGCTACGCATGATGGCAGCAGCAATAGGAGCGGTGACGGCTCGTCGGC
GAACACGAGCCGGGAAGGCAGGACGTCCGGGCCAGGTGACGAGTTGGATG
ATCAATCCCGTGCTTCCGGATCCGATCTGATGCCTCCCACCACCACGGAT
GAAAGTGACGAGGAGGATAATTCTTCCCTAGCGACGGACGAGACGGGCGA
GAACATGCCTCACCAGCAAGCCGATGCCTTCCTGAGCGTGGGGCAGGGGT
CGTTGCTTTCCCCTCCGGTGGAGGGAGGGAAAAAGGTCTTAGTGACGGGG
GGAGCTGGATTTGTGGGATCGCATGTGGCGGACCATTTGTTGACAAGGGG
GGATGTCGTCATCTTGGTGGATGAGTTTAATGATTATTATGACACCTCGC
TGAAAAGATCGAATGTCGCGTATTTGTTGGCGAAGCATGGCTCGTCGAGG
CTGAGGGTGGTGGAGGCCGATATTTGTGATGCGCATGCGATGGAGCAGCT
CTTCATCACAGAGAGTCCTAAACATGTGGTGCACATGGCGGCACGGGCGG
GGGTGAGGCCCTCGATTGATGATCCATTTGTGTACATCCATTCAAATATG
TTAGGAACGACGCGCTTGTTGGAATTGGCGCGGATCCACGGGAATGAGTG
TTTTGTCTGGGCAAGTTCTAGTAGCGTGTATGGGGGCTCGAGCCTGGAAG
AATTCGGAGAGGACGATTACGTGGATAACCCCGTCTCCCCCTACGCAGCC
ACGAAGAAAGCCTGCGAGCTGATGACTTACACCTACCACTCGCTCTACAA
GATGAATGTGTCGGGTCTGCGCTTCTTCACGGTCTACGGACCGAGGGGCA
GGCCGGACATGGCTCCTTTTAAGTTTGTGGATCGGGTAAGTAGGGGGTTG
GAGATCCAGCAGTTCGGGGATGGGAGCAGCTCCAGGGACTACACCTACAT
TGATGATATTGTTGACGGGGTAGTGCGCGCCTTGGATCGTCCACTGGGAT
ATCAGATTTTCAACCTGGGCAATGGGAGTCCGTACCGGCTGAGTGATTTC
ATCGGCTTAGTGGAGAAGAATGTGGGCAGGTCGGCGTTGATCAAGATCTT
GCCGGACCAGCCGGGGGATGTCCCTAGGACATGCGCCAACATTTCGAAGG
CGCAGGAATTGCTGGGATACCAGCCCAAGGTCTCGTTTGAGGAGGGCATT
GCCAGGACGGTGGACTGGTATAAGGGTTGGAAGGCCGAGAAGGAGGCGAT
GGAGGCACGGAAAAAGAACGAGAGGGTGGAGGAGATGAAAAAGGGGTTGA
GGGAGAGTCAGGGGATGATGAAGGGTGGGACCTTGGAGAAGGTGGCATCG
ACGATCTCGGTTTTCAGCCAAGGAGGACTGAGCGGTTAG
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Synonyms
Publications