NO01G01780.1, NO01G01780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01780.1
Unique NameNO01G01780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1425
Alignment locationchr1:452041..453728 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:452041..453728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01780.1 vs.
Match: EWM29087.1 (trna rrna methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 307.4 bits (786), Expect = 7.100e-80
Identity = 166/222 (74.77%), Postives = 184/222 (82.88%), Query Frame = 0
Query:   23 LSLLLILLLTT---GAAKAFVTPSNPSVAPA-RVQPHRLTRMSSADRSVRQPKKTIAFEAALKDKGAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICG 241
            +SL+L L L     G   A    S P + P    +  R   MSS DRSVRQPKKTIA+EAALKD+GAPAVILVRPYLDEN+GSCARAMLNFGLTDLRII+PFCDHLTPMARARASGAD +LE AR+F  +  AV+DLSEVIGTSARQRDMT+TIV+PEEAARLAVG+L +FA+GGAR GYMFGSERNGL NEDLVYA R+LQIPTN AFSSLNLGQAVQICG
Sbjct:    9 VSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTMSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230          
The following BLAST results are available for this feature:
BLAST of NO01G01780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29087.17.100e-8074.77trna rrna methyltransferase [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01780NO01G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01780.1NO01G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01780.1.cds1NO01G01780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01780.1.cds2NO01G01780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01780.1.cds3NO01G01780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01780.1 ID=NO01G01780.1|Name=NO01G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp
ACAGGCTAGAACTGCAGCTTACCCACGTGTAGACGTCACAGCGACTTGCC
CGGTCGGAAATGGGGGCTTCCCTACACCATCACCTACGCCCCCTCCCCCT
CTCCCTTCCCAGCCTCCTCCCACCCCTATCACTGCTGCTGATCCTGCTTC
TAACCACAGGCGCGGCCAAAGCATTTGTGACGCCATCGAATCCATCGGTA
GCCCCTGCACGTGTACAGCCACATCGTCTTACAAGAATGAGCTCGGCCGA
CCGCAGTGTGCGACAACCTAAAAAGACAATCGCATTCGAGGCCGCGCTAA
AGGATAAGGGCGCTCCAGCCGTCATACTGGTACGGCCTTACCTCGACGAG
AATATTGGTTCCTGTGCGCGTGCTATGCTCAATTTTGGGCTCACTGACCT
TCGCATCATTAACCCTTTTTGCGACCATTTAACGCCCATGGCACGGGCAC
GGGCATCGGGCGCTGATGCAATATTGGAGGCCGCCCGCATTTTTCCAGAC
GTAGGAGCAGCAGTCTCGGACTTGAGTGAAGTGATCGGCACGAGTGCTCG
GCAACGGGATATGACGGTAACAATTGTCACGCCTGAAGAAGCGGCGCGTC
TGGCGGTAGGTTCCTTGGAGTCTTTCGCACAAGGTGGGGCAAGGACAGGC
TATATGTTCGGCTCAGAGCGGAATGGATTGATAAATGAAGATTTGGTGTA
TGCGACGCGCCTGCTGCAGATACCGACGAATACTGCGTTTAGCAGTTTGA
ATCTCGGCCAGGCTGTGCAGATTTGCGGCTACGAATATTGGAAAGCCCGC
GCTCACCTCGGTGACAACCTCTACACATACAAAGAAGCTACATTAAGCCT
TGCCAAGGGCACCCGCCTCGCAACCACCGGTGAGGTAGATGGTGTCTGGA
AGAGAATACAAGACATGCTGGACGCAACTGAATTGAACCCAGACCCACAT
GTAAGGAGAGGGTTATATGATAGATTAAAAAGCTGGTTGCTGAGATCAAG
GCCTGATGTGAGGGATGTTAACGCCCTTCACGGCGCTGTCTCGACGGTTG
TTAGCAAGCATGAAAAATTGGAAAATTTGAAAAATGAGTTGAAGGAAGCG
AATGCTAGGGGACGGCAACGGGCGACGACGCCCAGGAGGGAGAAGGGGGG
AGGGAAGGAGGGAGGGAAGGAGAGAGGGAGGGAGGGAGGGAGAGAGGGAG
GTGCGGTGCTTGTGGATGGTGTGGGGGAGGAGGAGATAAAGTGGAAAAAG
GAGTTGGATAGGGAGAGAATGGCGCAGGAGGAGGATGGGGGAGAGGGGTG
GCAGGATGAGGAGAAGGCAAAGCGCAGAGGATCAGGATGGTGAGGGGAAA
GGGAAGAAGGGAGGAGAAGGAATCAAATAAGTGAAATAAACGACAAAAAT
GTAGAACTATCGCTGATCACTTTCG
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protein sequence of NO01G01780.1

>NO01G01780.1-protein ID=NO01G01780.1-protein|Name=NO01G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MGASLHHHLRPLPLSLPSLLPPLSLLLILLLTTGAAKAFVTPSNPSVAPA
RVQPHRLTRMSSADRSVRQPKKTIAFEAALKDKGAPAVILVRPYLDENIG
SCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGA
AVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMF
GSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHL
GDNLYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRR
GLYDRLKSWLLRSRPDVRDVNALHGAVSTVVSKHEKLENLKNELKEANAR
GRQRATTPRREKGGGKEGGKERGREGGREGGAVLVDGVGEEEIKWKKELD
RERMAQEEDGGEGWQDEEKAKRRGSGW*
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mRNA from alignment at chr1:452041..453728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01780.1 ID=NO01G01780.1|Name=NO01G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1688bp|location=Sequence derived from alignment at chr1:452041..453728+ (Nannochloropsis oceanica)
ACAGGCTAGAACTGCAGCTTACCCACGTGTAGACGTCACAGCGACTTGCC CGGTCGGAAATGGGGGCTTCCCTACACCATCACCTACGCCCCCTCCCCCT CTCCCTTCCCAGCCTCCTCCCACCCCTATCACTGCTGCTGATCCTGCTTC TAACCACAGGCGCGGCCAAAGCATTTGTGACGCCATCGAATCCATCGGTA GCCCCTGCACGTGTACAGCCACATCGTCTTACAAGAATGAGCTCGGCCGA CCGCAGTGTGCGACAACCTAAAAAGACAATCGCATTCGAGGCCGCGCTAA AGGATAAGGGCGCTCCAGCCGTCATACTGGTACGGCCTTACCTCGACGAG AATATTGGTTCCTGTGCGCGTGCTATGCTCAATTTTGGGCTCACTGACCT TCGCATCATTAACCCTTTTTGCGACCATTTAACGCCCATGGCACGGGCAC GGGCATCGGGCGCTGATGCAATATTGGAGGCCGCCCGCATTTTTCCAGAC GTAGGAGCAGCAGTCTCGGACTTGAGTGAAGTGATCGGCACGAGTGCTCG GCAACGGGATATGACGGTAACAATTGTCACGCCTGAAGAAGCGGCGCGTC TGGCGGTAGGTTCCTTGGAGTCTTTCGCACAAGGTATGTACAAGACAAAT CTTTTTCTGCACTCCTGACTTCTTTCCAATCATCCTCCTTCCTGCCTCTT TTTCCCCTCGTCTTTCCTACCGTAGGTGGGGCAAGGACAGGCTATATGTT CGGCTCAGAGCGGAATGGATTGATAAATGAAGATTTGGTGTATGCGACGC GCCTGCTGCAGATACCGACGAATACTGCGTTTAGCAGTTTGAATCTCGGC CAGGCTGTGCAGATTTGCGGGTAAGTCAGTGAGTGGTAGTCGCACGGGAG TGTAGGCAGAGGAGAAAAAGGGATCAATTTAAAGTGAATAAAATTGATAC ATAGATATCTGATGGACCCATCATCCCCCCCTTCTCGTTTAATTCTCTTT ACCACCTACCACCTTCCCTTCCTTCTTCCCCCCCCTCCAAGCTACGAATA TTGGAAAGCCCGCGCTCACCTCGGTGACAACCTCTACACATACAAAGAAG CTACATTAAGCCTTGCCAAGGGCACCCGCCTCGCAACCACCGGTGAGGTA GATGGTGTCTGGAAGAGAATACAAGACATGCTGGACGCAACTGAATTGAA CCCAGACCCACATGTAAGGAGAGGGTTATATGATAGATTAAAAAGCTGGT TGCTGAGATCAAGGCCTGATGTGAGGGATGTTAACGCCCTTCACGGCGCT GTCTCGACGGTTGTTAGCAAGCATGAAAAATTGGAAAATTTGAAAAATGA GTTGAAGGAAGCGAATGCTAGGGGACGGCAACGGGCGACGACGCCCAGGA GGGAGAAGGGGGGAGGGAAGGAGGGAGGGAAGGAGAGAGGGAGGGAGGGA GGGAGAGAGGGAGGTGCGGTGCTTGTGGATGGTGTGGGGGAGGAGGAGAT AAAGTGGAAAAAGGAGTTGGATAGGGAGAGAATGGCGCAGGAGGAGGATG GGGGAGAGGGGTGGCAGGATGAGGAGAAGGCAAAGCGCAGAGGATCAGGA TGGTGAGGGGAAAGGGAAGAAGGGAGGAGAAGGAATCAAATAAGTGAAAT AAACGACAAAAATGTAGAACTATCGCTGATCACTTTCG
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Coding sequence (CDS) from alignment at chr1:452041..453728+

>NO01G01780.1 ID=NO01G01780.1|Name=NO01G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr1:452041..453728+ (Nannochloropsis oceanica)
ATGGGGGCTTCCCTACACCATCACCTACGCCCCCTCCCCCTCTCCCTTCC
CAGCCTCCTCCCACCCCTATCACTGCTGCTGATCCTGCTTCTAACCACAG
GCGCGGCCAAAGCATTTGTGACGCCATCGAATCCATCGGTAGCCCCTGCA
CGTGTACAGCCACATCGTCTTACAAGAATGAGCTCGGCCGACCGCAGTGT
GCGACAACCTAAAAAGACAATCGCATTCGAGGCCGCGCTAAAGGATAAGG
GCGCTCCAGCCGTCATACTGGTACGGCCTTACCTCGACGAGAATATTGGT
TCCTGTGCGCGTGCTATGCTCAATTTTGGGCTCACTGACCTTCGCATCAT
TAACCCTTTTTGCGACCATTTAACGCCCATGGCACGGGCACGGGCATCGG
GCGCTGATGCAATATTGGAGGCCGCCCGCATTTTTCCAGACGTAGGAGCA
GCAGTCTCGGACTTGAGTGAAGTGATCGGCACGAGTGCTCGGCAACGGGA
TATGACGGTAACAATTGTCACGCCTGAAGAAGCGGCGCGTCTGGCGGTAG
GTTCCTTGGAGTCTTTCGCACAAGGTGGGGCAAGGACAGGCTATATGTTC
GGCTCAGAGCGGAATGGATTGATAAATGAAGATTTGGTGTATGCGACGCG
CCTGCTGCAGATACCGACGAATACTGCGTTTAGCAGTTTGAATCTCGGCC
AGGCTGTGCAGATTTGCGGCTACGAATATTGGAAAGCCCGCGCTCACCTC
GGTGACAACCTCTACACATACAAAGAAGCTACATTAAGCCTTGCCAAGGG
CACCCGCCTCGCAACCACCGGTGAGGTAGATGGTGTCTGGAAGAGAATAC
AAGACATGCTGGACGCAACTGAATTGAACCCAGACCCACATGTAAGGAGA
GGGTTATATGATAGATTAAAAAGCTGGTTGCTGAGATCAAGGCCTGATGT
GAGGGATGTTAACGCCCTTCACGGCGCTGTCTCGACGGTTGTTAGCAAGC
ATGAAAAATTGGAAAATTTGAAAAATGAGTTGAAGGAAGCGAATGCTAGG
GGACGGCAACGGGCGACGACGCCCAGGAGGGAGAAGGGGGGAGGGAAGGA
GGGAGGGAAGGAGAGAGGGAGGGAGGGAGGGAGAGAGGGAGGTGCGGTGC
TTGTGGATGGTGTGGGGGAGGAGGAGATAAAGTGGAAAAAGGAGTTGGAT
AGGGAGAGAATGGCGCAGGAGGAGGATGGGGGAGAGGGGTGGCAGGATGA
GGAGAAGGCAAAGCGCAGAGGATCAGGATGGTGA
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Synonyms
Publications