|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:452041..453728 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01780.1 vs.
Match: EWM29087.1 (trna rrna methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 307.4 bits (786), Expect = 7.100e-80 Identity = 166/222 (74.77%), Postives = 184/222 (82.88%), Query Frame = 0
Query: 23 LSLLLILLLTT---GAAKAFVTPSNPSVAPA-RVQPHRLTRMSSADRSVRQPKKTIAFEAALKDKGAPAVILVRPYLDENIGSCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGAAVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMFGSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICG 241
+SL+L L L G A S P + P + R MSS DRSVRQPKKTIA+EAALKD+GAPAVILVRPYLDEN+GSCARAMLNFGLTDLRII+PFCDHLTPMARARASGAD +LE AR+F + AV+DLSEVIGTSARQRDMT+TIV+PEEAARLAVG+L +FA+GGAR GYMFGSERNGL NEDLVYA R+LQIPTN AFSSLNLGQAVQICG
Sbjct: 9 VSLILHLHLAKVGRGFMMALWDTSTPKIDPNYHSRSLRAMTMSSTDRSVRQPKKTIAYEAALKDRGAPAVILVRPYLDENVGSCARAMLNFGLTDLRIIDPFCDHLTPMARARASGADNVLEGARVFRGLDEAVADLSEVIGTSARQRDMTITIVSPEEAARLAVGTLANFARGGARAGYMFGSERNGLTNEDLVYADRILQIPTNPAFSSLNLGQAVQICG 230
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01780.1 ID=NO01G01780.1|Name=NO01G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp ACAGGCTAGAACTGCAGCTTACCCACGTGTAGACGTCACAGCGACTTGCC CGGTCGGAAATGGGGGCTTCCCTACACCATCACCTACGCCCCCTCCCCCT CTCCCTTCCCAGCCTCCTCCCACCCCTATCACTGCTGCTGATCCTGCTTC TAACCACAGGCGCGGCCAAAGCATTTGTGACGCCATCGAATCCATCGGTA GCCCCTGCACGTGTACAGCCACATCGTCTTACAAGAATGAGCTCGGCCGA CCGCAGTGTGCGACAACCTAAAAAGACAATCGCATTCGAGGCCGCGCTAA AGGATAAGGGCGCTCCAGCCGTCATACTGGTACGGCCTTACCTCGACGAG AATATTGGTTCCTGTGCGCGTGCTATGCTCAATTTTGGGCTCACTGACCT TCGCATCATTAACCCTTTTTGCGACCATTTAACGCCCATGGCACGGGCAC GGGCATCGGGCGCTGATGCAATATTGGAGGCCGCCCGCATTTTTCCAGAC GTAGGAGCAGCAGTCTCGGACTTGAGTGAAGTGATCGGCACGAGTGCTCG GCAACGGGATATGACGGTAACAATTGTCACGCCTGAAGAAGCGGCGCGTC TGGCGGTAGGTTCCTTGGAGTCTTTCGCACAAGGTGGGGCAAGGACAGGC TATATGTTCGGCTCAGAGCGGAATGGATTGATAAATGAAGATTTGGTGTA TGCGACGCGCCTGCTGCAGATACCGACGAATACTGCGTTTAGCAGTTTGA ATCTCGGCCAGGCTGTGCAGATTTGCGGCTACGAATATTGGAAAGCCCGC GCTCACCTCGGTGACAACCTCTACACATACAAAGAAGCTACATTAAGCCT TGCCAAGGGCACCCGCCTCGCAACCACCGGTGAGGTAGATGGTGTCTGGA AGAGAATACAAGACATGCTGGACGCAACTGAATTGAACCCAGACCCACAT GTAAGGAGAGGGTTATATGATAGATTAAAAAGCTGGTTGCTGAGATCAAG GCCTGATGTGAGGGATGTTAACGCCCTTCACGGCGCTGTCTCGACGGTTG TTAGCAAGCATGAAAAATTGGAAAATTTGAAAAATGAGTTGAAGGAAGCG AATGCTAGGGGACGGCAACGGGCGACGACGCCCAGGAGGGAGAAGGGGGG AGGGAAGGAGGGAGGGAAGGAGAGAGGGAGGGAGGGAGGGAGAGAGGGAG GTGCGGTGCTTGTGGATGGTGTGGGGGAGGAGGAGATAAAGTGGAAAAAG GAGTTGGATAGGGAGAGAATGGCGCAGGAGGAGGATGGGGGAGAGGGGTG GCAGGATGAGGAGAAGGCAAAGCGCAGAGGATCAGGATGGTGAGGGGAAA GGGAAGAAGGGAGGAGAAGGAATCAAATAAGTGAAATAAACGACAAAAAT GTAGAACTATCGCTGATCACTTTCG back to topprotein sequence of NO01G01780.1 >NO01G01780.1-protein ID=NO01G01780.1-protein|Name=NO01G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp MGASLHHHLRPLPLSLPSLLPPLSLLLILLLTTGAAKAFVTPSNPSVAPA RVQPHRLTRMSSADRSVRQPKKTIAFEAALKDKGAPAVILVRPYLDENIG SCARAMLNFGLTDLRIINPFCDHLTPMARARASGADAILEAARIFPDVGA AVSDLSEVIGTSARQRDMTVTIVTPEEAARLAVGSLESFAQGGARTGYMF GSERNGLINEDLVYATRLLQIPTNTAFSSLNLGQAVQICGYEYWKARAHL GDNLYTYKEATLSLAKGTRLATTGEVDGVWKRIQDMLDATELNPDPHVRR GLYDRLKSWLLRSRPDVRDVNALHGAVSTVVSKHEKLENLKNELKEANAR GRQRATTPRREKGGGKEGGKERGREGGREGGAVLVDGVGEEEIKWKKELD RERMAQEEDGGEGWQDEEKAKRRGSGW* back to topmRNA from alignment at chr1:452041..453728+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01780.1 ID=NO01G01780.1|Name=NO01G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1688bp|location=Sequence derived from alignment at chr1:452041..453728+ (Nannochloropsis oceanica) ACAGGCTAGAACTGCAGCTTACCCACGTGTAGACGTCACAGCGACTTGCC
CGGTCGGAAATGGGGGCTTCCCTACACCATCACCTACGCCCCCTCCCCCT
CTCCCTTCCCAGCCTCCTCCCACCCCTATCACTGCTGCTGATCCTGCTTC
TAACCACAGGCGCGGCCAAAGCATTTGTGACGCCATCGAATCCATCGGTA
GCCCCTGCACGTGTACAGCCACATCGTCTTACAAGAATGAGCTCGGCCGA
CCGCAGTGTGCGACAACCTAAAAAGACAATCGCATTCGAGGCCGCGCTAA
AGGATAAGGGCGCTCCAGCCGTCATACTGGTACGGCCTTACCTCGACGAG
AATATTGGTTCCTGTGCGCGTGCTATGCTCAATTTTGGGCTCACTGACCT
TCGCATCATTAACCCTTTTTGCGACCATTTAACGCCCATGGCACGGGCAC
GGGCATCGGGCGCTGATGCAATATTGGAGGCCGCCCGCATTTTTCCAGAC
GTAGGAGCAGCAGTCTCGGACTTGAGTGAAGTGATCGGCACGAGTGCTCG
GCAACGGGATATGACGGTAACAATTGTCACGCCTGAAGAAGCGGCGCGTC
TGGCGGTAGGTTCCTTGGAGTCTTTCGCACAAGGTATGTACAAGACAAAT
CTTTTTCTGCACTCCTGACTTCTTTCCAATCATCCTCCTTCCTGCCTCTT
TTTCCCCTCGTCTTTCCTACCGTAGGTGGGGCAAGGACAGGCTATATGTT
CGGCTCAGAGCGGAATGGATTGATAAATGAAGATTTGGTGTATGCGACGC
GCCTGCTGCAGATACCGACGAATACTGCGTTTAGCAGTTTGAATCTCGGC
CAGGCTGTGCAGATTTGCGGGTAAGTCAGTGAGTGGTAGTCGCACGGGAG
TGTAGGCAGAGGAGAAAAAGGGATCAATTTAAAGTGAATAAAATTGATAC
ATAGATATCTGATGGACCCATCATCCCCCCCTTCTCGTTTAATTCTCTTT
ACCACCTACCACCTTCCCTTCCTTCTTCCCCCCCCTCCAAGCTACGAATA
TTGGAAAGCCCGCGCTCACCTCGGTGACAACCTCTACACATACAAAGAAG
CTACATTAAGCCTTGCCAAGGGCACCCGCCTCGCAACCACCGGTGAGGTA
GATGGTGTCTGGAAGAGAATACAAGACATGCTGGACGCAACTGAATTGAA
CCCAGACCCACATGTAAGGAGAGGGTTATATGATAGATTAAAAAGCTGGT
TGCTGAGATCAAGGCCTGATGTGAGGGATGTTAACGCCCTTCACGGCGCT
GTCTCGACGGTTGTTAGCAAGCATGAAAAATTGGAAAATTTGAAAAATGA
GTTGAAGGAAGCGAATGCTAGGGGACGGCAACGGGCGACGACGCCCAGGA
GGGAGAAGGGGGGAGGGAAGGAGGGAGGGAAGGAGAGAGGGAGGGAGGGA
GGGAGAGAGGGAGGTGCGGTGCTTGTGGATGGTGTGGGGGAGGAGGAGAT
AAAGTGGAAAAAGGAGTTGGATAGGGAGAGAATGGCGCAGGAGGAGGATG
GGGGAGAGGGGTGGCAGGATGAGGAGAAGGCAAAGCGCAGAGGATCAGGA
TGGTGAGGGGAAAGGGAAGAAGGGAGGAGAAGGAATCAAATAAGTGAAAT
AAACGACAAAAATGTAGAACTATCGCTGATCACTTTCG back to topCoding sequence (CDS) from alignment at chr1:452041..453728+ >NO01G01780.1 ID=NO01G01780.1|Name=NO01G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr1:452041..453728+ (Nannochloropsis oceanica) ATGGGGGCTTCCCTACACCATCACCTACGCCCCCTCCCCCTCTCCCTTCC CAGCCTCCTCCCACCCCTATCACTGCTGCTGATCCTGCTTCTAACCACAG GCGCGGCCAAAGCATTTGTGACGCCATCGAATCCATCGGTAGCCCCTGCA CGTGTACAGCCACATCGTCTTACAAGAATGAGCTCGGCCGACCGCAGTGT GCGACAACCTAAAAAGACAATCGCATTCGAGGCCGCGCTAAAGGATAAGG GCGCTCCAGCCGTCATACTGGTACGGCCTTACCTCGACGAGAATATTGGT TCCTGTGCGCGTGCTATGCTCAATTTTGGGCTCACTGACCTTCGCATCAT TAACCCTTTTTGCGACCATTTAACGCCCATGGCACGGGCACGGGCATCGG GCGCTGATGCAATATTGGAGGCCGCCCGCATTTTTCCAGACGTAGGAGCA GCAGTCTCGGACTTGAGTGAAGTGATCGGCACGAGTGCTCGGCAACGGGA TATGACGGTAACAATTGTCACGCCTGAAGAAGCGGCGCGTCTGGCGGTAG GTTCCTTGGAGTCTTTCGCACAAGGTGGGGCAAGGACAGGCTATATGTTC GGCTCAGAGCGGAATGGATTGATAAATGAAGATTTGGTGTATGCGACGCG CCTGCTGCAGATACCGACGAATACTGCGTTTAGCAGTTTGAATCTCGGCC AGGCTGTGCAGATTTGCGGCTACGAATATTGGAAAGCCCGCGCTCACCTC GGTGACAACCTCTACACATACAAAGAAGCTACATTAAGCCTTGCCAAGGG CACCCGCCTCGCAACCACCGGTGAGGTAGATGGTGTCTGGAAGAGAATAC AAGACATGCTGGACGCAACTGAATTGAACCCAGACCCACATGTAAGGAGA GGGTTATATGATAGATTAAAAAGCTGGTTGCTGAGATCAAGGCCTGATGT GAGGGATGTTAACGCCCTTCACGGCGCTGTCTCGACGGTTGTTAGCAAGC ATGAAAAATTGGAAAATTTGAAAAATGAGTTGAAGGAAGCGAATGCTAGG GGACGGCAACGGGCGACGACGCCCAGGAGGGAGAAGGGGGGAGGGAAGGA GGGAGGGAAGGAGAGAGGGAGGGAGGGAGGGAGAGAGGGAGGTGCGGTGC TTGTGGATGGTGTGGGGGAGGAGGAGATAAAGTGGAAAAAGGAGTTGGAT AGGGAGAGAATGGCGCAGGAGGAGGATGGGGGAGAGGGGTGGCAGGATGA GGAGAAGGCAAAGCGCAGAGGATCAGGATGGTGA back to top
|