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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:439238..443775 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01740.1 vs.
Match: EWM29062.1 (rab11 family gtpase [Nannochloropsis gaditana]) HSP 1 Score: 421.0 bits (1081), Expect = 2.300e-114 Identity = 212/220 (96.36%), Postives = 216/220 (98.18%), Query Frame = 0
Query: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRLAFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKIALSSNPPQNKAAASFQQCCK 221
MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKA DGK+IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEE+RLAFIETSALDASGVDTAFHRILTEIH+LLSKKSMAGN+GGFGQAIG GQKIALSSNPP NKA ASFQQCCK
Sbjct: 1 MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSIKAADGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVTFDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEENRLAFIETSALDASGVDTAFHRILTEIHSLLSKKSMAGNDGGFGQAIGVGQKIALSSNPPANKATASFQQCCK 220
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01740.1 ID=NO01G01740.1|Name=NO01G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=4024bp CGAACAAGTACGTTGCGGCCCATGCATCAAAAGTGATTCACGGCGACATT TGCGTTTCCCTTCTTTACAGATTTATAAGTACACACACATTCCATTATAC GTTCATCCTTCCCAGAATTCGGCACTTGTTTTATCCATGACCACCTGCGC CCTCCCCCCCGCTATTCCAGCCTTCCACCTTCCCCACTCCCAGTCTGCAC CCCATAGTTTTACGAAGTCAACCGTCCGACGATACCATCCAACAAACCCT GCGCACATTCCAGCGAGACCATCGGACTCATACATGTAAGAGTCAAATTC AGACAGTCCTCCTGCGTCGACGCCGCAACAAACACATACTGCCCAATCCC ATGCAGGCTGATTCCCCACTGCAATCGGGCTAACCGCAACCCCTCTTTCT CCCCTCCCTCTTCCTTATGCACAAGAATCCCCAAGTTCGAAATTGCCGCC GCTTTAACCCGTCCCTGCATCCGTGGTGACACTGCCATGCGCGCCAGAGC TTCATAAATCCCATATTTGAACGCCCGAAAGGCCGCCACCTGCCTCTTCC ACTGCCCTGCTTTCATCGCCTCAGTCAACCCTTTCTTATACCCCCTTGCA TGGGCCCATAGCTCGTCTCTGTCGCCCACCGTAACGATTGTATCGATGGG TGCAGCCAAACACTGAAGCGCACCCGCATATCGGGCCGAGTCCACCTCAC ATAGAGCCTTGCGCAAGCTAACCATCGTCTCCATCTTCAAGTTCGCCGAA GGAGATTCAGGCATTAGTCGCTTTAACTCTAGTATGGTGGCAGCAGCGAG TGCAGCTGTGACTGTCGTGTATTCGGCATGGCACCGGTGGAGGAGCTGAT GGAGGAAGGGGCCTTGGATGCGCGAGGAGAGGATGTGCATGTTGCGAAGG GAGAGTGAGGTGGTGGTGACTTCGGCGGACGGGACGGAAGGGCGTTTGAG AAGCCTGTATGTTTGATTGAAAAAAGGTGGGTAAAAGTTTGATGAAATGA CGAGCGTGAGCAGAATACGCCCTGTCCTGGTGATCGCAAAAAAGGGCAGG CAATGTGAGCAGACAATATCTACGGCCAACCAAATCGCCAGACCCAAAAA TATAAACATCACGACACGAAAACCTGCCTTCAATTGTAAAACACGTACCA AGTGATGCGTCGCCACAAAAAAGTTAGGGCACCCTGCAACCCGTCTCCAG ACGTGGATGGCAAAACCGTTTCAAAGAGCTCGTCTTGTGAGGGGAGAAAA TCCAAAGCCGACGAAGCCGGTGACTGCTCCTTTCCCGCACCATTCTTATT ACGACTACTGCTGTTACTACAATTTGTACTGCTGTTGCTGTCCCTGGAAG CCTCCTGTCGGAGCAAGTCCTCCATTCCCGCCACTACCTCCTTCAAAAAC AATACTACACTCTCCCCATCCATTATACTGTGGTGCGCAAATACCACCAA CGATTGATTCGCCCCTCCCTCCTTCCTTCCCTCCTGATTCCCTTCTTGTA CCAGAAAGAGCTGCCAAAAAGACCCCTCGCATCGACCAAGGGCAATAGGT GTGCGCTTAATCTCCTCCTTCACAAACTCCACCACCCCTCCCCCTGCCTC TCGACCTTCAGTTACAACGAAAGGTACAAACCATGCAGCTGGCGATACGT CCTCCATAGGCAAAACTTCCAATTGCTCTCCGTCTGCCGTGATGCGTGCG CGTAAATTGGGATGTCGTGCAATGGTGAGGCGGAGGGCATGCTCGACTAG GCGGGCATTAGGGAGAGGAAGCACAGTAGAAGAACTGCCGCCTTTGTTAT CGAGCTCAGCAATCATATAAATCAACCCACAGCCAATTTGATGAGCTTTG AACATGAAGTGCTCAAAGCCACCGAGGGACCTGCGAGAGTGCAGGGACGT TTGGATGGTGCTAGTGTTCTCCGCTACGTCGTTCCTAGCCTCCTCTTCAT GTCCACTCCAGGCCCGTGCCACTCGCTTTTGTCCTTGCCATGTTGTAAGT TTAGTTTTCATCAGAAACGTGGTTTGCGCCATGGTGGTGTGATACAGCTA ATAAAAACGCAGGGGGGCGGTGCACACACGTTCCTAGGGCAGATCACCGC AAGCAAGCTTGGCTGCTTTTTTGGGCGCGGCGTCTTGGCGTGAGACCAAG ACCTCCGGCCCTCGGAATGACGCTGTTGAATTATAAAGACATCAAGTGTT TTACGCGAGTCGTGATGAGTTCTCAAGACAAGTAAAGCATACACGCGAGA AGTCACAAACTTGAACGTCTTGCCTCGCTCTTTTTTCCGTTGGCCTGCTC GCCCGAGAGGGGAGAACTCTGCCTCGAGAGATCGTCTTCCCAATGGTATG TCCACCATCATACCACACCTCGGACACAAACAATCTCCATCCATACCACA GACAGGAAGAGGATGGCCACCGGGACCCGGTGGGGGCCCCAAGCATAGCT GTAGACGAGACGTAGCGGGGCCGGAACACACTGCGCGAGGAGTGGAGACA ACGGATTGCTTGTCATCGACCAGAGGGGGAGCGGACCCTTGTGTGTCCAA ATCCTCCCTTTTTCGGCAACATCACAGAGCAAGCCTTTTCCTTTTTCACT ACACTGGCTTTAGGGCTCTTTGGGGCAGTGCGTGACTTTTTGATGTGCCT TTCCTTCGATGCATGGCCATTTGCTCTTGCTGCCTCGGTCTTGCTCAACC ACCGCACAGACAGTGCAAGCGCCATCGGTGTCCTCGCTAGGGCACAGAAA AGCTTACGACGGCTGTGACTGTGTGCACCCTTTCCCTTCGTGCCCCTCCT GTTCCAGGCCCTCATCACCATCAGCTGCCTCTCCATTCTAATATCCACTC CAACCACTCCCACTCTGACAGCTGCTCATTCCTCACTCACAATATAAGAA GAAGCGACAACAGTAACAGTACAAGTAAAAATAAATAGCAAGGATGGCGG GTGGTAAGGACGAGACATATGACTACCTTTTTAAGGTGGTCCTCATTGGC GACTCGGGCGTCGGAAAGTCCAACCTCCTGTCAAGGTTCACTCGCAACGA ATTCAACTTGGAGAGCAAGAGTACGATTGGCGTGGAGTTTGCGACAAAGA GCATCAAGGCGGGTGATGGAAAAATCATCAAAGCGCAGATTTGGGACACA GCAGGGCAGGAACGGTACCGGGCCATCACCAGTGCTTACTATCGCGGGGC TGTCGGGGCACTCCTCGTGTACGACATCTCCAAGCGCGTGACTTTTGACA ACGTTGAGCGCTGGTTGAAAGAGCTGCGCGAGCACGCCGATCAGTCGATT GTGGTGATGCTGGTGGGGAATAAGAGTGATCTGCGGCATTTGCGCACCGT TCCGACGGAGGACGCCATGCGCTTCGCCGAGGAGCATCGGCTGGCTTTCA TTGAGACGTCGGCGTTGGATGCCTCGGGTGTGGATACTGCTTTTCACCGG ATTTTGACAGAGATTCACGCGTTATTGTCCAAGAAATCCATGGCCGGAAA TGAGGGAGGGTTTGGGCAAGCCATAGGGGAGGGTCAAAAGATTGCCTTGT CGAGCAACCCTCCCCAGAATAAGGCAGCGGCGAGTTTCCAACAATGCTGC AAGTCGCTTTAAGCGAGAGGTGAATCGGGAAGAAGCGGAGGAAGTGGCTA GAGAGAGGGAGGAAGGCGAGGAAAGAAGAGGGCGATACAGGTCGTCAGTA TGTTACATTTAATTGAGACATGGAGTCCACGATCGGCTGCGCCGCGGGAA AGCAAGCAAGACCGGCGGACTGCCAGGGCTGCAATTAGAAGGGATAAAAG AGTGGAAAGAGGTTCTGATCTTCTGCCGTGTCCCTGTCTATGAGTTCGTT CGGCTTGGCCATCTTTCCCCCCCGTACTTTTTGGGTTTTCAATCTCTTCT CACCCCTCTCATAAAAAATGTCTGCCGTCCGCGAGAAATGAATAATGGGT TCCCCGTCCAAAAGCGTGGGGAGGCGCTGGAGCTGGTCAAGAGGGTGAAA AGTAAAGAAGATATACAAGTTAAC back to topprotein sequence of NO01G01740.1 >NO01G01740.1-protein ID=NO01G01740.1-protein|Name=NO01G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp MAGGKDETYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA TKSIKAGDGKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDISKRVT FDNVERWLKELREHADQSIVVMLVGNKSDLRHLRTVPTEDAMRFAEEHRL AFIETSALDASGVDTAFHRILTEIHALLSKKSMAGNEGGFGQAIGEGQKI ALSSNPPQNKAAASFQQCCKSL* back to topmRNA from alignment at chr1:439238..443775+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01740.1 ID=NO01G01740.1|Name=NO01G01740.1|organism=Nannochloropsis oceanica|type=mRNA|length=4538bp|location=Sequence derived from alignment at chr1:439238..443775+ (Nannochloropsis oceanica) CGAACAAGTACGTTGCGGCCCATGCATCAAAAGTGATTCACGGCGACATT
TGCGTTTCCCTTCTTTACAGATTTATAAGTACACACACATTCCATTATAC
GTTCATCCTTCCCAGAATTCGGCACTTGTTTTATCCATGACCACCTGCGC
CCTCCCCCCCGCTATTCCAGCCTTCCACCTTCCCCACTCCCAGTCTGCAC
CCCATAGTTTTACGAAGTCAACCGTCCGACGATACCATCCAACAAACCCT
GCGCACATTCCAGCGAGACCATCGGACTCATACATGTAAGAGTCAAATTC
AGACAGTCCTCCTGCGTCGACGCCGCAACAAACACATACTGCCCAATCCC
ATGCAGGCTGATTCCCCACTGCAATCGGGCTAACCGCAACCCCTCTTTCT
CCCCTCCCTCTTCCTTATGCACAAGAATCCCCAAGTTCGAAATTGCCGCC
GCTTTAACCCGTCCCTGCATCCGTGGTGACACTGCCATGCGCGCCAGAGC
TTCATAAATCCCATATTTGAACGCCCGAAAGGCCGCCACCTGCCTCTTCC
ACTGCCCTGCTTTCATCGCCTCAGTCAACCCTTTCTTATACCCCCTTGCA
TGGGCCCATAGCTCGTCTCTGTCGCCCACCGTAACGATTGTATCGATGGG
TGCAGCCAAACACTGAAGCGCACCCGCATATCGGGCCGAGTCCACCTCAC
ATAGAGCCTTGCGCAAGCTAACCATCGTCTCCATCTTCAAGTTCGCCGAA
GGAGATTCAGGCATTAGTCGCTTTAACTCTAGTATGGTGGCAGCAGCGAG
TGCAGCTGTGACTGTCGTGTATTCGGCATGGCACCGGTGGAGGAGCTGAT
GGAGGAAGGGGCCTTGGATGCGCGAGGAGAGGATGTGCATGTTGCGAAGG
GAGAGTGAGGTGGTGGTGACTTCGGCGGACGGGACGGAAGGGCGTTTGAG
AAGCCTGTATGTTTGATTGAAAAAAGGTGGGTAAAAGTTTGATGAAATGA
CGAGCGTGAGCAGAATACGCCCTGTCCTGGTGATCGCAAAAAAGGGCAGG
CAATGTGAGCAGACAATATCTACGGCCAACCAAATCGCCAGACCCAAAAA
TATAAACATCACGACACGAAAACCTGCCTTCAATTGTAAAACACGTACCA
AGTGATGCGTCGCCACAAAAAAGTTAGGGCACCCTGCAACCCGTCTCCAG
ACGTGGATGGCAAAACCGTTTCAAAGAGCTCGTCTTGTGAGGGGAGAAAA
TCCAAAGCCGACGAAGCCGGTGACTGCTCCTTTCCCGCACCATTCTTATT
ACGACTACTGCTGTTACTACAATTTGTACTGCTGTTGCTGTCCCTGGAAG
CCTCCTGTCGGAGCAAGTCCTCCATTCCCGCCACTACCTCCTTCAAAAAC
AATACTACACTCTCCCCATCCATTATACTGTGGTGCGCAAATACCACCAA
CGATTGATTCGCCCCTCCCTCCTTCCTTCCCTCCTGATTCCCTTCTTGTA
CCAGAAAGAGCTGCCAAAAAGACCCCTCGCATCGACCAAGGGCAATAGGT
GTGCGCTTAATCTCCTCCTTCACAAACTCCACCACCCCTCCCCCTGCCTC
TCGACCTTCAGTTACAACGAAAGGTACAAACCATGCAGCTGGCGATACGT
CCTCCATAGGCAAAACTTCCAATTGCTCTCCGTCTGCCGTGATGCGTGCG
CGTAAATTGGGATGTCGTGCAATGGTGAGGCGGAGGGCATGCTCGACTAG
GCGGGCATTAGGGAGAGGAAGCACAGTAGAAGAACTGCCGCCTTTGTTAT
CGAGCTCAGCAATCATATAAATCAACCCACAGCCAATTTGATGAGCTTTG
AACATGAAGTGCTCAAAGCCACCGAGGGACCTGCGAGAGTGCAGGGACGT
TTGGATGGTGCTAGTGTTCTCCGCTACGTCGTTCCTAGCCTCCTCTTCAT
GTCCACTCCAGGCCCGTGCCACTCGCTTTTGTCCTTGCCATGTTGTAAGT
TTAGTTTTCATCAGAAACGTGGTTTGCGCCATGGTGGTGTGATACAGCTA
ATAAAAACGCAGGGGGGCGGTGCACACACGTTCCTAGGGCAGATCACCGC
AAGCAAGCTTGGCTGCTTTTTTGGGCGCGGCGTCTTGGCGTGAGACCAAG
ACCTCCGGCCCTCGGAATGACGCTGTTGAATTATAAAGACATCAAGTGTT
TTACGCGAGTCGTGATGAGTTCTCAAGACAAGTAAAGCATACACGCGAGA
AGTCACAAACTTGAACGTCTTGCCTCGCTCTTTTTTCCGTTGGCCTGCTC
GCCCGAGAGGGGAGAACTCTGCCTCGAGAGATCGTCTTCCCAATGGTATG
TCCACCATCATACCACACCTCGGACACAAACAATCTCCATCCATACCACA
GACAGGAAGAGGATGGCCACCGGGACCCGGTGGGGGCCCCAAGCATAGCT
GTAGACGAGACGTAGCGGGGCCGGAACACACTGCGCGAGGAGTGGAGACA
ACGGATTGCTTGTCATCGACCAGAGGGGGAGCGGACCCTTGTGTGTCCAA
ATCCTCCCTTTTTCGGCAACATCACAGAGCAAGCCTTTTCCTTTTTCACT
ACACTGGCTTTAGGGCTCTTTGGGGCAGTGCGTGACTTTTTGATGTGCCT
TTCCTTCGATGCATGGCCATTTGCTCTTGCTGCCTCGGTCTTGCTCAACC
ACCGCACAGACAGTGCAAGCGCCATCGGTGTCCTCGCTAGGGCACAGAAA
AGCTTACGACGGCTGTGACTGTGTGCACCCTTTCCCTTCGTGCCCCTCCT
GTTCCAGGCCCTCATCACCATCAGCTGCCTCTCCATTCTAATATCCACTC
CAACCACTCCCACTCTGACAGCTGCTCATTCCTCACTCACAATATAAGAA
GAAGCGACAACAGTAACAGTACAAGTAAAAATAAATAGCAAGGATGGCGG
GTGGTAAGGACGAGACATATGACTACCTTTTTAAGGGTACGTTGGCGGGG
CACGCGCGTGAGGAAGGGAAGAGGAGAGTAAGGAAAAGGAGCCTGGCGCC
AGCATTCTCGTTCCACAGCCAGCCCTTTGTGTCATCAAATCGTATTCAGA
GTGCTTGAACATTCTATCAATATATCCCCCCGTCCCTTTCCTCTTCATCG
GCCCCGCAGTGGTCCTCATTGGCGACTCGGGCGTCGGAAAGTCCAACCTC
CTGTCAAGGTTCACTCGCAACGAATTCAACTTGGAGAGCAAGAGTACGAT
TGGCGTGGAGTTTGCGACAAAGAGCATCAAGGCGGGTGATGGAAAAATCA
TCAAAGCGCAGATTTGGGACACAGCAGGGCAGGTATGTCGTTCAAAAGAG
AAAGAGAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAAAGAGAGAA
AAGAGAGAGAGTGTGTGTGTGTGCGTGTGTGTGTGTCTGTGTGTGTGTAC
ATCCCGGGAGCATCAGAATCGCTCCTTCTATTCGACGCATGTCTCCCACA
GTATTTGACATGCATTTAATTTCATTCTCTCTTATCATCACTGGCCAGCA
TTTATCTCACGAACCTCCTTCTCACGAACCACCTTCTCACGAACCACCTT
CTCACGAACCTCCTCCTCACGAGCCTCCTTCTCACGAATCTCCTTCTCTC
CCCTCCTGCCGCCTCTTCTATAGGAACGGTACCGGGCCATCACCAGTGCT
TACTATCGCGGGGCTGTCGGGGCACTCCTCGTGTACGACATCTCCAAGCG
CGTGACTTTTGACAACGTTGAGCGCTGGTTGAAAGAGCTGCGCGAGCACG
CCGATCAGTCGATTGTGGTGATGCTGGTGGGGAATAAGAGTGATCTGCGG
CATTTGCGCACCGTTCCGACGGAGGACGCCATGCGCTTCGCCGAGGAGCA
TCGGCTGGCTTTCATTGAGACGTCGGCGTTGGATGCCTCGGGTGTGGATA
CTGCTTTTCACCGGATTTTGACAGAGATTCACGCGTTATTGTCCAAGAAA
TCCATGGCCGGAAATGAGGGAGGGTTTGGGCAAGCCATAGGGGAGGGTCA
AAAGATTGCCTTGTCGAGCAACCCTCCCCAGAATAAGGCAGCGGCGAGTT
TCCAACAATGCTGCAAGTCGCTTTAAGCGAGAGGTGAATCGGGAAGAAGC
GGAGGAAGTGGCTAGAGAGAGGGAGGAAGGCGAGGAAAGAAGAGGGCGAT
ACAGGTCGTCAGTATGTTACATTTAATTGAGACATGGAGTCCACGATCGG
CTGCGCCGCGGGAAAGCAAGCAAGACCGGCGGACTGCCAGGGCTGCAATT
AGAAGGGATAAAAGAGTGGAAAGAGGTTCTGATCTTCTGCCGTGTCCCTG
TCTATGAGTTCGTTCGGCTTGGCCATCTTTCCCCCCCGTACTTTTTGGGT
TTTCAATCTCTTCTCACCCCTCTCATAAAAAATGTCTGCCGTCCGCGAGA
AATGAATAATGGGTTCCCCGTCCAAAAGCGTGGGGAGGCGCTGGAGCTGG
TCAAGAGGGTGAAAAGTAAAGAAGATATACAAGTTAAC back to topCoding sequence (CDS) from alignment at chr1:439238..443775+ >NO01G01740.1 ID=NO01G01740.1|Name=NO01G01740.1|organism=Nannochloropsis oceanica|type=CDS|length=669bp|location=Sequence derived from alignment at chr1:439238..443775+ (Nannochloropsis oceanica) ATGGCGGGTGGTAAGGACGAGACATATGACTACCTTTTTAAGGTGGTCCT CATTGGCGACTCGGGCGTCGGAAAGTCCAACCTCCTGTCAAGGTTCACTC GCAACGAATTCAACTTGGAGAGCAAGAGTACGATTGGCGTGGAGTTTGCG ACAAAGAGCATCAAGGCGGGTGATGGAAAAATCATCAAAGCGCAGATTTG GGACACAGCAGGGCAGGAACGGTACCGGGCCATCACCAGTGCTTACTATC GCGGGGCTGTCGGGGCACTCCTCGTGTACGACATCTCCAAGCGCGTGACT TTTGACAACGTTGAGCGCTGGTTGAAAGAGCTGCGCGAGCACGCCGATCA GTCGATTGTGGTGATGCTGGTGGGGAATAAGAGTGATCTGCGGCATTTGC GCACCGTTCCGACGGAGGACGCCATGCGCTTCGCCGAGGAGCATCGGCTG GCTTTCATTGAGACGTCGGCGTTGGATGCCTCGGGTGTGGATACTGCTTT TCACCGGATTTTGACAGAGATTCACGCGTTATTGTCCAAGAAATCCATGG CCGGAAATGAGGGAGGGTTTGGGCAAGCCATAGGGGAGGGTCAAAAGATT GCCTTGTCGAGCAACCCTCCCCAGAATAAGGCAGCGGCGAGTTTCCAACA ATGCTGCAAGTCGCTTTAA back to top
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