NO01G01720.1, NO01G01720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01720.1
Unique NameNO01G01720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1685
Alignment locationchr1:433698..435935 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:433698..435935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01720.1 vs.
Match: EWM29097.1 (hypothetical protein Naga_100024g57 [Nannochloropsis gaditana])

HSP 1 Score: 305.1 bits (780), Expect = 2.800e-79
Identity = 177/338 (52.37%), Postives = 226/338 (66.86%), Query Frame = 0 
Query:    1 MTRQEYVPIKAICEELTSYGFSYKFGGSSPIIQPWKLSEGKAKKVGLLLEGEKAIRKFWEEHVRPKLSDEFYKRRNVDCILWVDEARKILGFEGPEYKDRFAKVRRFNQIHAAKTTAPDNVVGAPEVLTKGAVTSTTAVHGGSPPSGVESDSGGVPRSGAGPKKRKNSNCSSSTSASGLRSYGIDED--PQKKTSEKKRRVPESDDGLIHYTDLLRKYPAENTFSNFSNAAGSLSECLP-TMTYNHQLHTWASASSSSSSSSKPNNIRNAPWIHVKEQAELFESLYARVSTLSDSELRQASDLLRRGNPQMIGLVKAYVGKEADEASKKQFRRVLMTL 336
            MT QEY+P+K ICEELTSYGFSYKFGGSSPI+QPWKL+E KAKK+GLLLEGE+AIR+FWEE VRPKL D+FYKRRNVD  +WVDEARK+LGF+GPEYKDRFA  RR +Q      T P     A         T  T  H     + V +    + R G GP++   SN +  +     R    D D   + +  +KKR +P+ ++  IHY +LLRK  +E   ++    +GS S+ LP T   +H+L   +S  +S+S       IRNAPW+  KEQA+LFESLYARV+ LSD ELR+ASDLL +G+PQMIGLVKAY+GKEA++A   QF+R+L +L
Sbjct:   68 MTYQEYMPMKTICEELTSYGFSYKFGGSSPILQPWKLTESKAKKLGLLLEGERAIRRFWEEQVRPKLPDDFYKRRNVDDYMWVDEARKLLGFDGPEYKDRFATARRRDQ---GARTKPMRAGSAKNGAGMAEDTGGTRAH-----TSVSAKKAAL-REGRGPQEYVTSNSTKRSGTDDSRGGSRDSDNGQEVENIKKKRTLPKVEE-KIHYKELLRKTLSERAGASTGKESGSRSDGLPGTKQGSHRLQ--SSIFTSASPHRLQKRIRNAPWMGAKEQADLFESLYARVAILSDEELRRASDLLCQGSPQMIGLVKAYLGKEANDACIVQFKRILRSL 393
The following BLAST results are available for this feature:
BLAST of NO01G01720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29097.12.800e-7952.37hypothetical protein Naga_100024g57 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01720NO01G01720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01720.1NO01G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01720.1.cds1NO01G01720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01720.1.cds2NO01G01720.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01720.1.cds3NO01G01720.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01720.1.cds4NO01G01720.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01720.1 ID=NO01G01720.1|Name=NO01G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp
AGTGCATCTTTGTGTGTAAGGTCGTTGCGTGGAGGAAGGGGGGAGGGACA
TGAGCATGAGTCACACGGAACGCGTGTGCTATGGCGTGATTTGTTCGTCG
TTGGGATGCGGCATAGTCAGCTCCCCTTTTCCATTCACTGTGCGCCAGCG
GACCCATGCTGGTGGCCGTGCAAAGAAAGGAAGAAAGTGTGCCACGGAAT
GCAGGTACAAAGGTGCCCGTCTTGGCTGCGTGCGAGCATAGACAGAGCGT
CGTCGGCGAGGACAGTTGTTTCCTTGTAGTTGTAGTCCCACCACGCCTGC
GGATGCCTTTTAGTACTCAACACCAAACCATCCACCACAACAGGCTATCG
ACTGGCTGGCATTGCTGGTGCCGAGTTAGCCACCCTGCTATAGCGGGGCG
GCTCAGTCTCCCAAGGCCAACAACACCAACACACGAACACAGTCTCCTAT
TAGCCACAAACCTGTTTCCACTTTCAATCGCACTTCCAACAAAAAGCAGA
AATGACCCGACAAGAGTATGTGCCAATCAAGGCCATTTGCGAGGAACTGA
CGAGTTATGGATTCTCATACAAATTTGGCGGCTCGAGTCCGATAATACAG
CCCTGGAAGCTCAGCGAGGGCAAGGCTAAAAAGGTGGGACTCCTGTTAGA
AGGCGAGAAGGCCATCCGCAAGTTCTGGGAGGAGCACGTCCGTCCGAAAC
TGTCCGACGAGTTTTACAAGCGCCGCAACGTCGACTGTATCTTGTGGGTG
GATGAGGCACGCAAGATACTGGGTTTTGAAGGGCCCGAATACAAGGACCG
ATTTGCGAAAGTTCGCCGCTTCAACCAGATACATGCGGCCAAGACCACAG
CTCCGGACAATGTTGTAGGCGCACCGGAAGTACTGACGAAAGGAGCAGTA
ACTTCGACGACAGCTGTACACGGAGGTTCTCCTCCGTCAGGAGTGGAATC
GGATTCAGGAGGAGTGCCGAGATCAGGAGCAGGACCAAAAAAGCGCAAGA
ATAGCAACTGCAGCAGTAGCACCAGCGCTAGCGGGCTTCGCAGCTACGGC
ATTGACGAGGATCCGCAGAAGAAGACGAGTGAGAAGAAGAGGCGAGTGCC
AGAATCGGACGATGGTTTGATTCACTACACGGACTTGCTTCGAAAGTACC
CAGCAGAAAACACATTTTCTAACTTTTCCAATGCTGCCGGCTCCTTGTCG
GAGTGTCTCCCCACGATGACGTACAACCACCAGTTGCACACATGGGCGTC
CGCGTCCTCGTCCTCCTCGTCTTCCAGCAAGCCCAACAATATTCGCAACG
CCCCATGGATCCACGTCAAGGAACAAGCGGAACTCTTCGAATCTCTCTAC
GCGCGTGTGTCTACTTTGAGCGACAGCGAATTGCGGCAAGCATCCGATTT
GCTTCGACGTGGAAACCCTCAAATGATCGGATTGGTCAAGGCTTACGTGG
GCAAGGAGGCGGACGAGGCTAGCAAGAAGCAGTTCCGGCGGGTCTTAATG
ACACTTTTGGGATAAAATTGAAGCTGAATGAATGAAAAAGAAAGGAGAAA
AAGTAAAAAAAATGACGTTTGAGTGTTGTCCGGGAAAATATTTTTTCACT
AATGAAAAAGATAAAATCAAACCACATACAGAAACTGTAAATAATAAATG
GAAAGAAATACAGCGCAAACAAAATACGTGTTGAC
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protein sequence of NO01G01720.1

>NO01G01720.1-protein ID=NO01G01720.1-protein|Name=NO01G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MTRQEYVPIKAICEELTSYGFSYKFGGSSPIIQPWKLSEGKAKKVGLLLE
GEKAIRKFWEEHVRPKLSDEFYKRRNVDCILWVDEARKILGFEGPEYKDR
FAKVRRFNQIHAAKTTAPDNVVGAPEVLTKGAVTSTTAVHGGSPPSGVES
DSGGVPRSGAGPKKRKNSNCSSSTSASGLRSYGIDEDPQKKTSEKKRRVP
ESDDGLIHYTDLLRKYPAENTFSNFSNAAGSLSECLPTMTYNHQLHTWAS
ASSSSSSSSKPNNIRNAPWIHVKEQAELFESLYARVSTLSDSELRQASDL
LRRGNPQMIGLVKAYVGKEADEASKKQFRRVLMTLLG*
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mRNA from alignment at chr1:433698..435935+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01720.1 ID=NO01G01720.1|Name=NO01G01720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp|location=Sequence derived from alignment at chr1:433698..435935+ (Nannochloropsis oceanica)
AGTGCATCTTTGTGTGTAAGGTCGTTGCGTGGAGGAAGGGGGGAGGGACA
TGAGCATGAGTCACACGGAACGCGTGTGCTATGGCGTGATTTGTTCGTCG
TTGGGATGCGGCATAGTCAGCTCCCCTTTTCCATTCACTGTGCGCCAGCG
GACCCATGCTGGTGGCCGTGCAAAGAAAGGAAGAAAGTGTGCCACGGAAT
GCAGGTACAAAGGTGCCCGTCTTGGCTGCGTGCGAGCATAGACAGAGCGT
CGTCGGCGAGGACAGTTGTTTCCTTGTAGTTGTAGTCCCACCACGCCTGC
GGATGCCTTTTAGTACTCAACACCAAACCATCCACCACAACAGGCTATCG
ACTGGCTGGCATTGCTGGTGCCGAGTTAGCCACCCTGCTATAGCGGGGCG
GCTCAGTCTCCCAAGGCCAACAACACCAACACACGAACACAGTCTCCTAT
TAGCCACAAACCTGTTTCCACTTTCAATCGCACTTCCAACAAAAAGCAGA
AATGACCCGACAAGAGGTAAATCGCCGCGAGCTTGAGGGATATTCTTTGG
TGCTTCTAGTCGGCGTCTATCGTCCGCGATCGGTGATATGGACGTGAATT
TTCTGTCTCCAACCCAGCCAGTGTTACAAGGCTAGGCAATCGTCGCGGTT
TGTAATCGGAATTTACATCACAACAATGTTTGAAGTCTGACCTGCGCATT
TTCTCCACTAGTAAGAGAAGCGCTGCAGTCTCAGATGGTTGACACTCTGT
CTTTAATTCCTACCCATACCGTATCACACAGTATGTGCCAATCAAGGCCA
TTTGCGAGGAACTGACGAGTTATGGATTCTCATACAAATTTGGCGGCTCG
AGTCCGATAATACAGCCCTGGAAGCTCAGCGAGGGCAAGGCTAAAAAGGT
GGGACTCCTGTTAGAAGGCGAGAAGGCCATCCGCAAGTTCTGGGAGGAGC
ACGTCCGTCCGAAACTGTCCGACGAGTTTTACAAGTACGTTTCACCTTTA
TCGATTGCTCTCGCTCAGTAAATGAATAGAAGAAATTTTCAATCCTTAAT
ATGGGATAACACCCCTTTCCCACTTTCTCATCCCCCAACCGCTTGCGCGT
AACGCGCTCACACAGGCGCCGCAACGTCGACTGTATCTTGTGGGTGGATG
AGGCACGCAAGATACTGGGTTTTGAAGGGCCCGAATACAAGGACCGATTT
GCGAAAGTTCGCCGCTTCAACCAGATACATGCGGCCAAGACCACAGCTCC
GGACAATGTTGTAGGCGCACCGGAAGTACTGACGAAAGGAGCAGTAACTT
CGACGACAGCTGTACACGGAGGTTCTCCTCCGTCAGGAGTGGAATCGGAT
TCAGGAGGAGTGCCGAGATCAGGAGCAGGACCAAAAAAGCGCAAGAATAG
CAACTGCAGCAGTAGCACCAGCGCTAGCGGGCTTCGCAGCTACGGCATTG
ACGAGGATCCGCAGAAGAAGACGAGTGAGAAGAAGAGGCGAGTGCCAGAA
TCGGACGATGGTTTGATTCACTACACGGACTTGCTTCGAAAGTACCCAGC
AGAAAACACATTTTCTAACTTTTCCAATGCTGCCGGCTCCTTGTCGGAGT
GTCTCCCCACGATGACGTACAACCACCAGTTGCACACATGGGCGTCCGCG
TCCTCGTCCTCCTCGTCTTCCAGCAAGCCCAACAATATTCGCAACGCCCC
ATGGATCCACGTCAAGGCAAGTGATTCGAAAAAATACTTATAGATAGTTG
AAAGCACTTATCACTTTATATCAACAAAAAGGGCTCAGAATCAATTTCTC
CTTTTGATCTTCCCAGTCCTCTTCGGCATTTTCTGCTCACTCACCTTCGT
ATGTCCTCTTTGACCATTAACAGGAACAAGCGGAACTCTTCGAATCTCTC
TACGCGCGTGTGTCTACTTTGAGCGACAGCGAATTGCGGCAAGCATCCGA
TTTGCTTCGACGTGGAAACCCTCAAATGATCGGATTGGTCAAGGCTTACG
TGGGCAAGGAGGCGGACGAGGCTAGCAAGAAGCAGTTCCGGCGGGTCTTA
ATGACACTTTTGGGATAAAATTGAAGCTGAATGAATGAAAAAGAAAGGAG
AAAAAGTAAAAAAAATGACGTTTGAGTGTTGTCCGGGAAAATATTTTTTC
ACTAATGAAAAAGATAAAATCAAACCACATACAGAAACTGTAAATAATAA
ATGGAAAGAAATACAGCGCAAACAAAATACGTGTTGAC
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Coding sequence (CDS) from alignment at chr1:433698..435935+

>NO01G01720.1 ID=NO01G01720.1|Name=NO01G01720.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr1:433698..435935+ (Nannochloropsis oceanica)
ATGACCCGACAAGAGTATGTGCCAATCAAGGCCATTTGCGAGGAACTGAC
GAGTTATGGATTCTCATACAAATTTGGCGGCTCGAGTCCGATAATACAGC
CCTGGAAGCTCAGCGAGGGCAAGGCTAAAAAGGTGGGACTCCTGTTAGAA
GGCGAGAAGGCCATCCGCAAGTTCTGGGAGGAGCACGTCCGTCCGAAACT
GTCCGACGAGTTTTACAAGCGCCGCAACGTCGACTGTATCTTGTGGGTGG
ATGAGGCACGCAAGATACTGGGTTTTGAAGGGCCCGAATACAAGGACCGA
TTTGCGAAAGTTCGCCGCTTCAACCAGATACATGCGGCCAAGACCACAGC
TCCGGACAATGTTGTAGGCGCACCGGAAGTACTGACGAAAGGAGCAGTAA
CTTCGACGACAGCTGTACACGGAGGTTCTCCTCCGTCAGGAGTGGAATCG
GATTCAGGAGGAGTGCCGAGATCAGGAGCAGGACCAAAAAAGCGCAAGAA
TAGCAACTGCAGCAGTAGCACCAGCGCTAGCGGGCTTCGCAGCTACGGCA
TTGACGAGGATCCGCAGAAGAAGACGAGTGAGAAGAAGAGGCGAGTGCCA
GAATCGGACGATGGTTTGATTCACTACACGGACTTGCTTCGAAAGTACCC
AGCAGAAAACACATTTTCTAACTTTTCCAATGCTGCCGGCTCCTTGTCGG
AGTGTCTCCCCACGATGACGTACAACCACCAGTTGCACACATGGGCGTCC
GCGTCCTCGTCCTCCTCGTCTTCCAGCAAGCCCAACAATATTCGCAACGC
CCCATGGATCCACGTCAAGGAACAAGCGGAACTCTTCGAATCTCTCTACG
CGCGTGTGTCTACTTTGAGCGACAGCGAATTGCGGCAAGCATCCGATTTG
CTTCGACGTGGAAACCCTCAAATGATCGGATTGGTCAAGGCTTACGTGGG
CAAGGAGGCGGACGAGGCTAGCAAGAAGCAGTTCCGGCGGGTCTTAATGA
CACTTTTGGGATAA
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Synonyms
Publications