NO01G01710.1, NO01G01710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01710.1
Unique NameNO01G01710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1469
Alignment locationchr1:431598..434057 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:431598..434057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01710.1 vs.
Match: EWM29103.1 (glutathione peroxidase [Nannochloropsis gaditana])

HSP 1 Score: 340.9 bits (873), Expect = 3.800e-90
Identity = 172/232 (74.14%), Postives = 198/232 (85.34%), Query Frame = 0
Query:   50 KMHLNRRCFIAVATSSLAFTSTPVAASVLVAARTRASASPAFFSNRAVSLLATQVSSSSSSSNRQFSTTKMATPSSLYDFTVKDASGQDFNLGEQLKDKKAVLVVNVASQCGFTPQYEGLQKLQDKYGPKGFTVLAFPCNQFGGQEPDAAPEVCSYVKNRFKTTFPIMDKVDVNGKNAAPIFNFLKEQQSGFITNSVKWNFSKWLVKDGKPIKRYGPQEKPEAFDKDIAEAL 282
            +MH + RC  A+ATSSLA +++   A        R+ +SPAF S RAVSLLATQ+S+SSSS +R  ST KM+  SSLYDFTVKDA+GQDFNLGE LKDKKAVLVVNVASQCGFTPQY+GLQ+LQDKYGPKGFTVLAFPCNQFGGQEPDAAP+VC + K+RFK TFPIMDKVDVNG NAAP+FNFLKEQQ GF+TN+VKWNFSKWL+KDGKPIKRYGPQEKPE+ +KD+ + L
Sbjct:    8 QMHFSGRCIAALATSSLALSNSISLA--------RSRSSPAFVSTRAVSLLATQLSASSSSHSRHLST-KMSAASSLYDFTVKDANGQDFNLGE-LKDKKAVLVVNVASQCGFTPQYKGLQELQDKYGPKGFTVLAFPCNQFGGQEPDAAPQVCQFAKDRFKATFPIMDKVDVNGNNAAPVFNFLKEQQPGFLTNAVKWNFSKWLIKDGKPIKRYGPQEKPESIEKDVPQGL 229          
The following BLAST results are available for this feature:
BLAST of NO01G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29103.13.800e-9074.14glutathione peroxidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01710NO01G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01710.1NO01G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01710.1.cds1NO01G01710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01710.1.cds2NO01G01710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01710.1.cds3NO01G01710.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01710.1.cds4NO01G01710.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01710.1.cds5NO01G01710.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01710.1.cds6NO01G01710.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01710.1.cds7NO01G01710.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01710.1 ID=NO01G01710.1|Name=NO01G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1469bp
GCCAGCCAGTCGATAGCCTGTTGTGGTGGATGGTTTGGTGTTGAGTACTA
AAAGGCATCCGCAGGCGTGGTGGGACTACAACTACAAGGAAACAACTGTC
CTCGCCGACGACGCTCTGTCTATGCTCGCACGCAGCCAAGACGGGCACCT
TTGTACCTGCATTCCGTGGCACACTTTCTTCCTTTCTTTGCACGGCCACC
AGCATGGGTCCGCTGGCGCACAGTGAATGGAAAAGGGGAGCTGACTATGC
CGCATCCCAACGACGAACAAATCACGCCATAGCACACGCGTTCCGTGTGA
CTCATGCTCATGTCCCTCCCCCCTTCCTCCACGCAACGACCTTACACACA
AAGATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCT
CGCGTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCA
CTCGCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTG
CTTGCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTC
CACGACCAAGATGGCCACCCCGTCTAGCTTGTACGATTTTACCGTTAAGG
ATGCCAGCGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAG
GCTGTGTTGGTAGTGAACGTTGCTTCTCAATGCGGTTTCACCCCCCAGTA
CGAAGGTCTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGCTTCACTG
TTTTGGCCTTTCCTTGCAACCAATTTGGGGGGCAAGAGCCGGACGCTGCA
CCGGAGGTCTGCAGTTACGTCAAAAACCGCTTCAAGACCACTTTTCCCAT
CATGGATAAGGTGGACGTGAACGGTAAAAACGCTGCGCCTATTTTTAATT
TCCTGAAGGAGCAACAGTCTGGTTTTATTACCAACTCTGTGAAGTGGAAT
TTTTCCAAATGGCTGGTCAAGGACGGCAAGCCCATCAAGCGTTATGGCCC
CCAGGAGAAGCCTGAGGCCTTCGACAAGGACATTGCAGAGGCCTTAACCT
AATTTTTGATTTGTGAGACGAGAAGAGAAGGTAATTATCACTATCCTTGG
TTGCTGCGGCGGCTGCTGCTGCTATTTACACCAGTGGTTATGCTTCATTT
GAGATCAAGCGTACAAACAAAAACATGCACACCGACAATGAGAGAGGGTA
TCTTGAGTGATGTTAAAAAAAGGTGGAGTGTTTTTGTCGTTTTTCGGGGT
TTGCGCAAGGATAAGTGAGAGTGTGTCTGCACGGTTCAAGCACAAAATGA
TCAACGCCATCCCCACCACGGGCCGGCCTGTTGGATAAAAAGAAAAGAAA
AGAGAAGGAAAGGGAATGCGAAAACGAAGCTCGAGAGAGAAGGAAAAACT
CAGTGAAGTCTGGCAATGAGAAGCGAGGGATCGGAGCGAGAAATATGTTT
GGGCACGTATTTTGAGATA
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protein sequence of NO01G01710.1

>NO01G01710.1-protein ID=NO01G01710.1-protein|Name=NO01G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MGPLAHSEWKRGADYAASQRRTNHAIAHAFRVTHAHVPPPFLHATTLHTK
MHLNRRCFIAVATSSLAFTSTPVAASVLVAARTRASASPAFFSNRAVSLL
ATQVSSSSSSSNRQFSTTKMATPSSLYDFTVKDASGQDFNLGEQLKDKKA
VLVVNVASQCGFTPQYEGLQKLQDKYGPKGFTVLAFPCNQFGGQEPDAAP
EVCSYVKNRFKTTFPIMDKVDVNGKNAAPIFNFLKEQQSGFITNSVKWNF
SKWLVKDGKPIKRYGPQEKPEAFDKDIAEALT*
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mRNA from alignment at chr1:431598..434057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01710.1 ID=NO01G01710.1|Name=NO01G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp|location=Sequence derived from alignment at chr1:431598..434057- (Nannochloropsis oceanica)
GCCAGCCAGTCGATAGCCTGTTGTGGTGGATGGTTTGGTGTTGAGTACTA AAAGGCATCCGCAGGCGTGGTGGGACTACAACTACAAGGAAACAACTGTC CTCGCCGACGACGCTCTGTCTATGCTCGCACGCAGCCAAGACGGGCACCT TTGTACCTGCATTCCGTGGCACACTTTCTTCCTTTCTTTGCACGGCCACC AGCATGGGTCCGCTGGCGCACAGTGAATGGAAAAGGGGAGCTGACTATGC CGCATCCCAACGACGAACAAATCACGCCATAGCACACGCGTTCCGTGTGA CTCATGCTCATGTCCCTCCCCCCTTCCTCCACGCAACGACCTTACACACA AAGATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCT CGCGTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCA CTCGCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTG CTTGCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTC CACGACCAAGATGGCCACCCCGTAAGTTTCCCGGGGGGCGCAGAGGAGTT GTGGGGTCTGGAGCCCAAGTTTCACAGGACTTGAATCCTTCACTTACGTT CCGCTTTAAGCCTGGGTTTTCCATGCGTTCTTATCTTGTCTTTCCACTTT TTTCTTTTTCGCGCACAGGTCTAGCTTGTACGATTTTACCGTTAAGGATG CCAGCGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAGGCT GTGTTGGTAGTGAACGTTGCTTCTCAATGTATGTGGGCACCACGAAGGAA GGAAGTAAGGGAGAGAGGAAGGGTTTTCCGGTGAATTGCTTTTTAGGGCT TTTATAGATCCTTGTATGCTGTGCGGACGCGCTCGTAATTTGGTGGCTTT TCGCGCAAGCTCTCTCATCATCCTGCTGCTTCCAACTCATCTCTCTCCCC CGCACCGGACAATTGCCACACACGAACAGGCGGTTTCACCCCCCAGTACG AAGGTCTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGCTTCACTGTT TTGGCCTTTCCTTGCAACCGTTAGTGACATGTGAAGGGTGGAGGGAGTGA TGGAGGGGGATAAGAGTAATTGGAGAAGGAACTTGACGCACTTTCTTCTA ACTTACCTTTTTTTTCATATACACACACGCATGCGCCCTTGCTTCTTCAT CCTCCTCGCTCATCATCACAGAATTTGGGGTCAGTACTTTTATTTATTTG CTTGTCTACACCTCCCTTTCTTTCTCCTTTCCCCCTAACGATCAACCTCA CCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCGCT CTCTTTAGGGGCAAGAGCCGGACGCTGCACCGGAGGTCTGCAGTTACGTC AAAAACCGCTTCAAGACCACTTTTCCCATCATGGATAAGGTGGACGTGAA CGGTAAAAACGCTGCGCCTATTTTTAATTTCCTGAAGGAGCAACAGTCTG GTTTTATTACCAACTCTGTGAAGTGTACGTAAAGGGGGAGAAATTGGGAG GGAAGGGCTCGTCTCAGTGTCTTGTCAAATAAGTTCCCTCCCCTTGGATG AGCTGTAGACCTGCCGCGCCTTTTTTTTCTCCTCACCTGCCAACTTGCCC ACCGCGACTCACAGGGAATTTTTCCAAATGGCTGGTCAAGGACGGCAAGC CCATCAAGCGTTATGGTAGGTGCTTCTTCCTCTCATGTCCTTCATTTCTT GGTGTAGTTTTGATGGTCATGCTTCAATGCTACTGACCCCCTGCAGCCTG TCCTTTCTTGTCGTCTTCCATCTCCATCTCCATCCCTCCCTTTTTCCTTA GTCTCCTCCTCCCGCCATCCTCCTCTTTCCGTGGCTGACCTTATTCTCAC TTCTATCCTCCTTCTCATCCATGCGGGCGTCTGACAGGCCCCCAGGAGAA GCCTGAGGCCTTCGACAAGGACATTGCAGAGGCCTTAACCTAATTTTTGA TTTGTGAGACGAGAAGAGAAGGTAATTATCACTATCCTTGGTTGCTGCGG CGGCTGCTGCTGCTATTTACACCAGTGGTTATGCTTCATTTGAGATCAAG CGTACAAACAAAAACATGCACACCGACAATGAGAGAGGGTATCTTGAGTG ATGTTAAAAAAAGGTGGAGTGTTTTTGTCGTTTTTCGGGGTTTGCGCAAG GATAAGTGAGAGTGTGTCTGCACGGTTCAAGCACAAAATGATCAACGCCA TCCCCACCACGGGCCGGCCTGTTGGATAAAAAGAAAAGAAAAGAGAAGGA AAGGGAATGCGAAAACGAAGCTCGAGAGAGAAGGAAAAACTCAGTGAAGT CTGGCAATGAGAAGCGAGGGATCGGAGCGAGAAATATGTTTGGGCACGTA TTTTGAGATA
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Coding sequence (CDS) from alignment at chr1:431598..434057-

>NO01G01710.1 ID=NO01G01710.1|Name=NO01G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at chr1:431598..434057- (Nannochloropsis oceanica)
ATGGGTCCGCTGGCGCACAGTGAATGGAAAAGGGGAGCTGACTATGCCGC
ATCCCAACGACGAACAAATCACGCCATAGCACACGCGTTCCGTGTGACTC
ATGCTCATGTCCCTCCCCCCTTCCTCCACGCAACGACCTTACACACAAAG
ATGCACTTAAATCGTCGCTGCTTTATTGCCGTGGCCACTTCGTCTCTCGC
GTTTACCAGCACCCCCGTTGCCGCCTCGGTCTTAGTCGCTGCCCGCACTC
GCGCCAGCGCCAGCCCAGCATTCTTTAGCAACCGCGCCGTCTCGTTGCTT
GCGACTCAGGTCTCGTCGTCGTCATCTTCGTCAAACCGACAGTTCTCCAC
GACCAAGATGGCCACCCCGTCTAGCTTGTACGATTTTACCGTTAAGGATG
CCAGCGGCCAGGACTTCAACCTGGGCGAGCAGCTCAAAGACAAAAAGGCT
GTGTTGGTAGTGAACGTTGCTTCTCAATGCGGTTTCACCCCCCAGTACGA
AGGTCTCCAGAAGCTTCAGGACAAATACGGGCCCAAAGGCTTCACTGTTT
TGGCCTTTCCTTGCAACCAATTTGGGGGGCAAGAGCCGGACGCTGCACCG
GAGGTCTGCAGTTACGTCAAAAACCGCTTCAAGACCACTTTTCCCATCAT
GGATAAGGTGGACGTGAACGGTAAAAACGCTGCGCCTATTTTTAATTTCC
TGAAGGAGCAACAGTCTGGTTTTATTACCAACTCTGTGAAGTGGAATTTT
TCCAAATGGCTGGTCAAGGACGGCAAGCCCATCAAGCGTTATGGCCCCCA
GGAGAAGCCTGAGGCCTTCGACAAGGACATTGCAGAGGCCTTAACCTAA
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Synonyms
Publications