NO01G01690.1, NO01G01690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01690.1
Unique NameNO01G01690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1671
Alignment locationchr1:427557..429227 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:427557..429227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01690.1 vs.
Match: EWM29054.1 (rna binding motif protein 19 [Nannochloropsis gaditana])

HSP 1 Score: 746.9 bits (1927), Expect = 4.500e-212
Identity = 413/567 (72.84%), Postives = 466/567 (82.19%), Query Frame = 0 
Query:    2 ELLTHHGQVAEVHLPLDDTKRPKGFAFASFLLPEDAARALAAVDGQAFQGRLLHVLPAKEPPKDPLAELDPMQARTYKEKKEIERRQKAGDERGWNASYLRSETVVEAVADRLQLEKGQVLDRDGGEMAVKLALGETFLLAENREFFKNEGVDLTVLESAAAQQARRKQ-QQAAKGNGGAVATVSRSKTTLLVKNLPYSTTQEELTQLFGRFGQLGRVILPPSRTIALVDFLEAADAKKAFKGLAYKRFQHVPLYLEWAPMHTF--KAGGSRNSDVE------VGKEVTADVAAPVETTQPQKVKKIALVEVVEKKVEEEEPDGSFTLFVKNLNFATTEEKLLAYFKSKTQGVRTVAIPKKSAPVSAA---GKEKEKCSSSSSAVLSMGYGFVEYRSVAEAKAALREMEGAMLDGHRLQCKLSDKRLTARPLTAAKNKQKRTKLVVRNVAFQATSKELKELFGSFGKVKTVRLPKKFDGSHRGFAFVEFLTAQEAGNAFVALSSTHLYGKRLVLEWAEDKEDIETLREKASKDARKGAASALSNEGGGGGAGEGKKKWESAFDEGFD 557
            ELL   G VA++HLPLDD  RPKGFAFASFL+PEDA RA+ A+D +AFQGRLLHVL A+E P+DPLA+ DP +ARTYKE+KEIERRQ+AGDERGWNASYLRSETVVEAVA+RL+LEKGQVLDR+GG+MAVKLALGETFLLAENREFF+ EGVDLTVLESAAAQQ RRKQ  Q A+G      T+SRSKTT+LVKNLPYSTT+EELTQLFGRFG + +V+LPPSR++ LVDFLE A+AK+AFKGLAYKRF+HVPLYLEWAP+HTF  K  G  N++ E       G+   AD  AP+             +  V +   EEE +GSFTLFVKNLNFAT+EEKLLA+FKSKTQGVRTVAIPKK+APV AA    KE  K S++    LSMGYGFVEY  VA+A+AALR MEG  LDGHRLQCKLS KRL+AR +  AKN++KRTKLVVRNVAFQAT KE+KELF  FGKVKTVRLPKKFDGSHRGFAFVEFLTAQEA NAFVALSSTHLYGKRLVLEWAEDKED+ETLREKA+KDARKGAASALSNE  G G G  KKK  S FD+GF+
Sbjct:  435 ELLRPFGPVADMHLPLDDAHRPKGFAFASFLIPEDAVRAMEALDRRAFQGRLLHVLAAQEAPRDPLADADPARARTYKERKEIERRQRAGDERGWNASYLRSETVVEAVAERLRLEKGQVLDREGGDMAVKLALGETFLLAENREFFQKEGVDLTVLESAAAQQVRRKQLSQEARGG----PTISRSKTTILVKNLPYSTTEEELTQLFGRFGTVAKVLLPPSRSLGLVDFLEGAEAKRAFKGLAYKRFKHVPLYLEWAPLHTFMPKKRGGDNANEEGLATTGEGESAAADAGAPLSFQ----------IGRVGEDEGEEEREGSFTLFVKNLNFATSEEKLLAHFKSKTQGVRTVAIPKKTAPVGAARAVSKETGK-SNADQPALSMGYGFVEYAGVAQAQAALRAMEGTDLDGHRLQCKLSTKRLSAR-VPPAKNREKRTKLVVRNVAFQATPKEVKELFAGFGKVKTVRLPKKFDGSHRGFAFVEFLTAQEANNAFVALSSTHLYGKRLVLEWAEDKEDVETLREKATKDARKGAASALSNEAAGSGGGFLKKKGGSTFDKGFE 985
The following BLAST results are available for this feature:
BLAST of NO01G01690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29054.14.500e-21272.84rna binding motif protein 19 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01690NO01G01690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01690.1NO01G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01690.1.cds1NO01G01690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01690.1 ID=NO01G01690.1|Name=NO01G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
ATGGAGTTGCTAACCCACCACGGGCAAGTCGCCGAAGTCCACCTTCCCCT
CGACGACACTAAGCGGCCCAAAGGTTTCGCCTTCGCTTCCTTCCTCCTTC
CTGAGGATGCCGCACGGGCACTCGCCGCCGTTGATGGACAGGCATTTCAA
GGGCGATTGTTGCATGTGTTACCCGCCAAGGAACCACCCAAAGACCCTCT
GGCCGAGCTGGACCCGATGCAAGCACGGACGTACAAGGAAAAGAAGGAGA
TTGAACGCCGACAGAAAGCGGGAGACGAACGAGGGTGGAATGCCAGCTAT
CTCCGTAGTGAGACCGTTGTGGAAGCCGTGGCGGATAGGTTGCAATTGGA
AAAGGGCCAGGTTCTGGATAGGGATGGAGGAGAAATGGCAGTCAAGCTGG
CGTTAGGCGAGACCTTCCTCTTGGCAGAAAACAGAGAGTTTTTCAAGAAT
GAAGGGGTGGATCTGACTGTCCTGGAAAGCGCGGCTGCGCAGCAGGCACG
GAGGAAACAGCAGCAGGCAGCAAAAGGAAACGGAGGAGCAGTGGCGACGG
TCTCGAGGAGTAAGACGACGTTGTTGGTGAAGAATCTACCGTATAGTACA
ACACAGGAAGAGCTGACGCAGCTATTTGGTAGGTTTGGACAGTTGGGGAG
GGTGATCTTGCCCCCAAGTCGCACCATAGCGCTGGTGGACTTCTTGGAGG
CAGCAGATGCGAAGAAGGCATTCAAAGGATTGGCTTACAAGAGGTTTCAG
CATGTACCGCTATATTTGGAGTGGGCACCGATGCATACCTTTAAGGCGGG
GGGGAGTAGGAACAGCGATGTAGAGGTTGGGAAGGAGGTAACTGCTGACG
TTGCTGCTCCTGTGGAGACTACACAGCCGCAAAAGGTCAAGAAGATTGCA
CTAGTGGAGGTGGTGGAGAAGAAAGTGGAGGAGGAAGAGCCCGATGGGTC
ATTCACGCTCTTCGTAAAAAATCTTAACTTCGCGACGACGGAGGAGAAGC
TTTTGGCTTACTTTAAGAGTAAGACTCAGGGGGTTCGGACGGTGGCGATA
CCCAAAAAGAGTGCTCCTGTAAGTGCGGCGGGCAAGGAGAAGGAGAAATG
CAGCAGCAGCAGCAGTGCGGTCTTGTCGATGGGGTATGGTTTCGTGGAGT
ACAGGAGCGTGGCAGAAGCCAAGGCAGCCCTCAGGGAGATGGAAGGGGCT
ATGCTAGATGGCCATCGATTGCAGTGCAAGCTATCCGATAAGCGACTGAC
GGCCCGTCCTCTCACTGCAGCGAAGAACAAGCAAAAGCGTACGAAGCTTG
TGGTGCGAAACGTGGCTTTCCAAGCCACTTCGAAAGAGCTGAAGGAATTG
TTTGGGAGTTTTGGGAAGGTTAAGACGGTGAGGCTGCCAAAGAAGTTCGA
TGGGAGTCATAGGGGGTTTGCGTTTGTGGAGTTTTTGACGGCACAGGAAG
CGGGGAATGCTTTCGTGGCGTTGTCGTCGACACACTTATACGGCAAGAGG
TTGGTGTTGGAATGGGCGGAGGATAAGGAGGACATAGAGACCTTGAGGGA
AAAGGCCTCGAAGGACGCGAGGAAGGGGGCGGCGTCGGCGTTGAGCAATG
AGGGGGGTGGAGGAGGGGCAGGTGAAGGGAAGAAGAAGTGGGAGAGTGCT
TTTGATGAGGGGTTTGATTAA
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protein sequence of NO01G01690.1

>NO01G01690.1-protein ID=NO01G01690.1-protein|Name=NO01G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MELLTHHGQVAEVHLPLDDTKRPKGFAFASFLLPEDAARALAAVDGQAFQ
GRLLHVLPAKEPPKDPLAELDPMQARTYKEKKEIERRQKAGDERGWNASY
LRSETVVEAVADRLQLEKGQVLDRDGGEMAVKLALGETFLLAENREFFKN
EGVDLTVLESAAAQQARRKQQQAAKGNGGAVATVSRSKTTLLVKNLPYST
TQEELTQLFGRFGQLGRVILPPSRTIALVDFLEAADAKKAFKGLAYKRFQ
HVPLYLEWAPMHTFKAGGSRNSDVEVGKEVTADVAAPVETTQPQKVKKIA
LVEVVEKKVEEEEPDGSFTLFVKNLNFATTEEKLLAYFKSKTQGVRTVAI
PKKSAPVSAAGKEKEKCSSSSSAVLSMGYGFVEYRSVAEAKAALREMEGA
MLDGHRLQCKLSDKRLTARPLTAAKNKQKRTKLVVRNVAFQATSKELKEL
FGSFGKVKTVRLPKKFDGSHRGFAFVEFLTAQEAGNAFVALSSTHLYGKR
LVLEWAEDKEDIETLREKASKDARKGAASALSNEGGGGGAGEGKKKWESA
FDEGFD*
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mRNA from alignment at chr1:427557..429227+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01690.1 ID=NO01G01690.1|Name=NO01G01690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at chr1:427557..429227+ (Nannochloropsis oceanica)
ATGGAGTTGCTAACCCACCACGGGCAAGTCGCCGAAGTCCACCTTCCCCT
CGACGACACTAAGCGGCCCAAAGGTTTCGCCTTCGCTTCCTTCCTCCTTC
CTGAGGATGCCGCACGGGCACTCGCCGCCGTTGATGGACAGGCATTTCAA
GGGCGATTGTTGCATGTGTTACCCGCCAAGGAACCACCCAAAGACCCTCT
GGCCGAGCTGGACCCGATGCAAGCACGGACGTACAAGGAAAAGAAGGAGA
TTGAACGCCGACAGAAAGCGGGAGACGAACGAGGGTGGAATGCCAGCTAT
CTCCGTAGTGAGACCGTTGTGGAAGCCGTGGCGGATAGGTTGCAATTGGA
AAAGGGCCAGGTTCTGGATAGGGATGGAGGAGAAATGGCAGTCAAGCTGG
CGTTAGGCGAGACCTTCCTCTTGGCAGAAAACAGAGAGTTTTTCAAGAAT
GAAGGGGTGGATCTGACTGTCCTGGAAAGCGCGGCTGCGCAGCAGGCACG
GAGGAAACAGCAGCAGGCAGCAAAAGGAAACGGAGGAGCAGTGGCGACGG
TCTCGAGGAGTAAGACGACGTTGTTGGTGAAGAATCTACCGTATAGTACA
ACACAGGAAGAGCTGACGCAGCTATTTGGTAGGTTTGGACAGTTGGGGAG
GGTGATCTTGCCCCCAAGTCGCACCATAGCGCTGGTGGACTTCTTGGAGG
CAGCAGATGCGAAGAAGGCATTCAAAGGATTGGCTTACAAGAGGTTTCAG
CATGTACCGCTATATTTGGAGTGGGCACCGATGCATACCTTTAAGGCGGG
GGGGAGTAGGAACAGCGATGTAGAGGTTGGGAAGGAGGTAACTGCTGACG
TTGCTGCTCCTGTGGAGACTACACAGCCGCAAAAGGTCAAGAAGATTGCA
CTAGTGGAGGTGGTGGAGAAGAAAGTGGAGGAGGAAGAGCCCGATGGGTC
ATTCACGCTCTTCGTAAAAAATCTTAACTTCGCGACGACGGAGGAGAAGC
TTTTGGCTTACTTTAAGAGTAAGACTCAGGGGGTTCGGACGGTGGCGATA
CCCAAAAAGAGTGCTCCTGTAAGTGCGGCGGGCAAGGAGAAGGAGAAATG
CAGCAGCAGCAGCAGTGCGGTCTTGTCGATGGGGTATGGTTTCGTGGAGT
ACAGGAGCGTGGCAGAAGCCAAGGCAGCCCTCAGGGAGATGGAAGGGGCT
ATGCTAGATGGCCATCGATTGCAGTGCAAGCTATCCGATAAGCGACTGAC
GGCCCGTCCTCTCACTGCAGCGAAGAACAAGCAAAAGCGTACGAAGCTTG
TGGTGCGAAACGTGGCTTTCCAAGCCACTTCGAAAGAGCTGAAGGAATTG
TTTGGGAGTTTTGGGAAGGTTAAGACGGTGAGGCTGCCAAAGAAGTTCGA
TGGGAGTCATAGGGGGTTTGCGTTTGTGGAGTTTTTGACGGCACAGGAAG
CGGGGAATGCTTTCGTGGCGTTGTCGTCGACACACTTATACGGCAAGAGG
TTGGTGTTGGAATGGGCGGAGGATAAGGAGGACATAGAGACCTTGAGGGA
AAAGGCCTCGAAGGACGCGAGGAAGGGGGCGGCGTCGGCGTTGAGCAATG
AGGGGGGTGGAGGAGGGGCAGGTGAAGGGAAGAAGAAGTGGGAGAGTGCT
TTTGATGAGGGGTTTGATTAA
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Coding sequence (CDS) from alignment at chr1:427557..429227+

>NO01G01690.1 ID=NO01G01690.1|Name=NO01G01690.1|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at chr1:427557..429227+ (Nannochloropsis oceanica)
ATGGAGTTGCTAACCCACCACGGGCAAGTCGCCGAAGTCCACCTTCCCCT
CGACGACACTAAGCGGCCCAAAGGTTTCGCCTTCGCTTCCTTCCTCCTTC
CTGAGGATGCCGCACGGGCACTCGCCGCCGTTGATGGACAGGCATTTCAA
GGGCGATTGTTGCATGTGTTACCCGCCAAGGAACCACCCAAAGACCCTCT
GGCCGAGCTGGACCCGATGCAAGCACGGACGTACAAGGAAAAGAAGGAGA
TTGAACGCCGACAGAAAGCGGGAGACGAACGAGGGTGGAATGCCAGCTAT
CTCCGTAGTGAGACCGTTGTGGAAGCCGTGGCGGATAGGTTGCAATTGGA
AAAGGGCCAGGTTCTGGATAGGGATGGAGGAGAAATGGCAGTCAAGCTGG
CGTTAGGCGAGACCTTCCTCTTGGCAGAAAACAGAGAGTTTTTCAAGAAT
GAAGGGGTGGATCTGACTGTCCTGGAAAGCGCGGCTGCGCAGCAGGCACG
GAGGAAACAGCAGCAGGCAGCAAAAGGAAACGGAGGAGCAGTGGCGACGG
TCTCGAGGAGTAAGACGACGTTGTTGGTGAAGAATCTACCGTATAGTACA
ACACAGGAAGAGCTGACGCAGCTATTTGGTAGGTTTGGACAGTTGGGGAG
GGTGATCTTGCCCCCAAGTCGCACCATAGCGCTGGTGGACTTCTTGGAGG
CAGCAGATGCGAAGAAGGCATTCAAAGGATTGGCTTACAAGAGGTTTCAG
CATGTACCGCTATATTTGGAGTGGGCACCGATGCATACCTTTAAGGCGGG
GGGGAGTAGGAACAGCGATGTAGAGGTTGGGAAGGAGGTAACTGCTGACG
TTGCTGCTCCTGTGGAGACTACACAGCCGCAAAAGGTCAAGAAGATTGCA
CTAGTGGAGGTGGTGGAGAAGAAAGTGGAGGAGGAAGAGCCCGATGGGTC
ATTCACGCTCTTCGTAAAAAATCTTAACTTCGCGACGACGGAGGAGAAGC
TTTTGGCTTACTTTAAGAGTAAGACTCAGGGGGTTCGGACGGTGGCGATA
CCCAAAAAGAGTGCTCCTGTAAGTGCGGCGGGCAAGGAGAAGGAGAAATG
CAGCAGCAGCAGCAGTGCGGTCTTGTCGATGGGGTATGGTTTCGTGGAGT
ACAGGAGCGTGGCAGAAGCCAAGGCAGCCCTCAGGGAGATGGAAGGGGCT
ATGCTAGATGGCCATCGATTGCAGTGCAAGCTATCCGATAAGCGACTGAC
GGCCCGTCCTCTCACTGCAGCGAAGAACAAGCAAAAGCGTACGAAGCTTG
TGGTGCGAAACGTGGCTTTCCAAGCCACTTCGAAAGAGCTGAAGGAATTG
TTTGGGAGTTTTGGGAAGGTTAAGACGGTGAGGCTGCCAAAGAAGTTCGA
TGGGAGTCATAGGGGGTTTGCGTTTGTGGAGTTTTTGACGGCACAGGAAG
CGGGGAATGCTTTCGTGGCGTTGTCGTCGACACACTTATACGGCAAGAGG
TTGGTGTTGGAATGGGCGGAGGATAAGGAGGACATAGAGACCTTGAGGGA
AAAGGCCTCGAAGGACGCGAGGAAGGGGGCGGCGTCGGCGTTGAGCAATG
AGGGGGGTGGAGGAGGGGCAGGTGAAGGGAAGAAGAAGTGGGAGAGTGCT
TTTGATGAGGGGTTTGATTAA
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Synonyms
Publications