NO01G01590.1, NO01G01590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01590.1
Unique NameNO01G01590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1431
Alignment locationchr1:400327..401757 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:400327..401757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01590.1 vs.
Match: EWM29049.1 (DNA glycosylase [Nannochloropsis gaditana])

HSP 1 Score: 464.9 bits (1195), Expect = 3.000e-127
Identity = 268/429 (62.47%), Postives = 304/429 (70.86%), Query Frame = 0 
Query:   52 RSTPGKSSRGKGKAMAYIKKEEDVEEKAAAATTTTTTRSSSRPRRVREETPTPSSAAAASFLAKRAKNE---KQDESGAFFTTINDDDKAA-LQDLLKKWIQPGTLLKITASETSPYPQQERPTPYEALYARDLLAALHGEPEREKLEGNRSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFDNLKKHFPTYKQVLAAKPGEVEEVIKFAGLSEIKVGRIRAILTTVLKERPNDCVAGEPSLEFLREMPTEEIKEYLGNFKGVGPKTIACVLLFTIGVDDFAVDTHVWHIAKRLGWVPGAASREDTYKHLNNRIPDCVKYSLHVLLVLHGKKCVSCCKGRTQLAPDGPCPLGRVGKMRGELAGLAAAAATAAATTTVACGGVVVGCNNCDKAGVVVKKVMKGREDVGGRKRDKIKAITIKEEIA 477
            ++TP  S   +GK +  +KKEE  E+     +  T       PRR R++     S+   S  +K+ K E   K+  S      I+D D+   ++ LL KW  PGT +KITASE SPYPQQ RPTP+EALY RDLLA LHGEPER+ LE N SGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAF+NLK  +PTYKQVLAA PG VEE IKFAGLS+IKVGRIRAIL TVL+E P  C  GEPSLEFLR +PT  IKEYL  FKGVGPKTIACVLLFTIG DDFAVDTHVWHIAK+LGWVPGAASRED YKHLNNR+PD +KY+LHVLLVLHGKKC SCCKGRTQLAPDGPCPLG++ KMR EL   A AAA  AA   V    V     +  +     K + KG+   G R     K I +KEE A
Sbjct:   74 KTTPNASGE-EGKKVGVVKKEETEED-----SKVTGAVDGYMPRRSRDKAL--GSSLVESLSSKKIKLEAESKRKPSACPDKLIHDADEVLKIKALLDKWTGPGTSIKITASEISPYPQQRRPTPFEALYVRDLLAQLHGEPERDVLEENCSGQGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFENLKVRYPTYKQVLAAAPGAVEETIKFAGLSDIKVGRIRAILETVLEEHPEKCPEGEPSLEFLRALPTAGIKEYLSKFKGVGPKTIACVLLFTIGHDDFAVDTHVWHIAKKLGWVPGAASREDAYKHLNNRVPDAIKYALHVLLVLHGKKCESCCKGRTQLAPDGPCPLGKLQKMREELV-KAEAAAMEAAAARVGLAHVKKEEESVTQNTARQKSINKGKG--GARAAVVKKEIVVKEEWA 491
The following BLAST results are available for this feature:
BLAST of NO01G01590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29049.13.000e-12762.47DNA glycosylase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01590NO01G01590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01590.1NO01G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01590.1.cds1NO01G01590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01590.1 ID=NO01G01590.1|Name=NO01G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp
ATGGCGGGTCCAGTCGCGGTCAAGCAAGAGCCCGCTTGCAGCAGCACCAG
AAGCAGCAGCATCAATAGCAGCGGCAAAGACAACAAGCGCGGGGGGGGTT
GGGAGGCATGCCAGGCACATGACAACGCCGTCGCCACGGCGACCACCACC
ACCCGCAGCACGCCGGGTAAGAGCAGTAGGGGGAAGGGGAAGGCCATGGC
TTACATCAAGAAGGAGGAAGACGTGGAAGAAAAGGCCGCGGCTGCTACCA
CGACGACGACGACGAGGAGCAGCAGCAGGCCACGCCGCGTCCGCGAGGAG
ACACCTACGCCCTCTTCAGCGGCTGCTGCATCTTTCCTCGCTAAGAGAGC
CAAGAATGAAAAGCAGGATGAGAGCGGCGCTTTTTTTACCACTATCAACG
ACGACGACAAGGCAGCCCTCCAAGACCTGCTGAAAAAATGGATCCAACCC
GGAACGCTCCTTAAAATCACGGCCAGTGAGACAAGCCCTTATCCACAGCA
GGAACGCCCAACTCCTTATGAGGCCCTGTATGCCCGTGACCTTCTCGCGG
CTTTACACGGAGAGCCGGAGCGGGAAAAGTTAGAAGGGAATCGCAGTGGT
CAGGGGACGTTGCTTGAGAAGAGGGCTCGCTCGGTGTTGGACTCGTTGGT
ACGGACGATACTTAGTCAGAATACGACTGATGCACTGAGTAAGCGGGCTT
TCGATAATTTGAAGAAACATTTTCCGACCTATAAGCAAGTTCTGGCGGCC
AAGCCTGGAGAGGTGGAGGAGGTGATCAAGTTTGCCGGGTTGTCTGAGAT
TAAAGTGGGGAGAATCCGCGCGATTTTGACGACCGTGTTGAAGGAACGAC
CGAATGACTGCGTGGCTGGAGAACCAAGCCTGGAGTTTTTGCGAGAGATG
CCCACAGAGGAGATTAAGGAGTATCTAGGGAATTTCAAGGGAGTTGGCCC
TAAAACGATTGCATGCGTGCTCTTGTTCACCATCGGCGTGGATGATTTTG
CAGTGGATACGCATGTGTGGCACATTGCCAAGAGGCTGGGATGGGTGCCA
GGGGCAGCTTCTCGGGAAGATACATACAAACATTTGAATAATCGCATTCC
GGACTGTGTTAAGTACAGCTTGCATGTGTTGCTGGTGCTGCATGGGAAGA
AGTGCGTGTCCTGCTGTAAGGGTCGAACACAACTGGCCCCCGATGGCCCC
TGTCCGTTGGGGAGGGTCGGGAAAATGAGGGGAGAGCTAGCGGGGTTGGC
TGCCGCTGCTGCTACAGCTGCTGCTACTACTACTGTTGCTTGTGGTGGTG
TTGTTGTTGGTTGCAATAATTGTGATAAAGCAGGGGTCGTGGTGAAGAAG
GTGATGAAGGGCAGGGAGGATGTCGGGGGGAGGAAGAGGGATAAGATCAA
GGCTATTACCATAAAGGAAGAAATTGCGTGA
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protein sequence of NO01G01590.1

>NO01G01590.1-protein ID=NO01G01590.1-protein|Name=NO01G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MAGPVAVKQEPACSSTRSSSINSSGKDNKRGGGWEACQAHDNAVATATTT
TRSTPGKSSRGKGKAMAYIKKEEDVEEKAAAATTTTTTRSSSRPRRVREE
TPTPSSAAAASFLAKRAKNEKQDESGAFFTTINDDDKAALQDLLKKWIQP
GTLLKITASETSPYPQQERPTPYEALYARDLLAALHGEPEREKLEGNRSG
QGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFDNLKKHFPTYKQVLAA
KPGEVEEVIKFAGLSEIKVGRIRAILTTVLKERPNDCVAGEPSLEFLREM
PTEEIKEYLGNFKGVGPKTIACVLLFTIGVDDFAVDTHVWHIAKRLGWVP
GAASREDTYKHLNNRIPDCVKYSLHVLLVLHGKKCVSCCKGRTQLAPDGP
CPLGRVGKMRGELAGLAAAAATAAATTTVACGGVVVGCNNCDKAGVVVKK
VMKGREDVGGRKRDKIKAITIKEEIA*
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mRNA from alignment at chr1:400327..401757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01590.1 ID=NO01G01590.1|Name=NO01G01590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp|location=Sequence derived from alignment at chr1:400327..401757- (Nannochloropsis oceanica)
ATGGCGGGTCCAGTCGCGGTCAAGCAAGAGCCCGCTTGCAGCAGCACCAG
AAGCAGCAGCATCAATAGCAGCGGCAAAGACAACAAGCGCGGGGGGGGTT
GGGAGGCATGCCAGGCACATGACAACGCCGTCGCCACGGCGACCACCACC
ACCCGCAGCACGCCGGGTAAGAGCAGTAGGGGGAAGGGGAAGGCCATGGC
TTACATCAAGAAGGAGGAAGACGTGGAAGAAAAGGCCGCGGCTGCTACCA
CGACGACGACGACGAGGAGCAGCAGCAGGCCACGCCGCGTCCGCGAGGAG
ACACCTACGCCCTCTTCAGCGGCTGCTGCATCTTTCCTCGCTAAGAGAGC
CAAGAATGAAAAGCAGGATGAGAGCGGCGCTTTTTTTACCACTATCAACG
ACGACGACAAGGCAGCCCTCCAAGACCTGCTGAAAAAATGGATCCAACCC
GGAACGCTCCTTAAAATCACGGCCAGTGAGACAAGCCCTTATCCACAGCA
GGAACGCCCAACTCCTTATGAGGCCCTGTATGCCCGTGACCTTCTCGCGG
CTTTACACGGAGAGCCGGAGCGGGAAAAGTTAGAAGGGAATCGCAGTGGT
CAGGGGACGTTGCTTGAGAAGAGGGCTCGCTCGGTGTTGGACTCGTTGGT
ACGGACGATACTTAGTCAGAATACGACTGATGCACTGAGTAAGCGGGCTT
TCGATAATTTGAAGAAACATTTTCCGACCTATAAGCAAGTTCTGGCGGCC
AAGCCTGGAGAGGTGGAGGAGGTGATCAAGTTTGCCGGGTTGTCTGAGAT
TAAAGTGGGGAGAATCCGCGCGATTTTGACGACCGTGTTGAAGGAACGAC
CGAATGACTGCGTGGCTGGAGAACCAAGCCTGGAGTTTTTGCGAGAGATG
CCCACAGAGGAGATTAAGGAGTATCTAGGGAATTTCAAGGGAGTTGGCCC
TAAAACGATTGCATGCGTGCTCTTGTTCACCATCGGCGTGGATGATTTTG
CAGTGGATACGCATGTGTGGCACATTGCCAAGAGGCTGGGATGGGTGCCA
GGGGCAGCTTCTCGGGAAGATACATACAAACATTTGAATAATCGCATTCC
GGACTGTGTTAAGTACAGCTTGCATGTGTTGCTGGTGCTGCATGGGAAGA
AGTGCGTGTCCTGCTGTAAGGGTCGAACACAACTGGCCCCCGATGGCCCC
TGTCCGTTGGGGAGGGTCGGGAAAATGAGGGGAGAGCTAGCGGGGTTGGC
TGCCGCTGCTGCTACAGCTGCTGCTACTACTACTGTTGCTTGTGGTGGTG
TTGTTGTTGGTTGCAATAATTGTGATAAAGCAGGGGTCGTGGTGAAGAAG
GTGATGAAGGGCAGGGAGGATGTCGGGGGGAGGAAGAGGGATAAGATCAA
GGCTATTACCATAAAGGAAGAAATTGCGTGA
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Coding sequence (CDS) from alignment at chr1:400327..401757-

>NO01G01590.1 ID=NO01G01590.1|Name=NO01G01590.1|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at chr1:400327..401757- (Nannochloropsis oceanica)
ATGGCGGGTCCAGTCGCGGTCAAGCAAGAGCCCGCTTGCAGCAGCACCAG
AAGCAGCAGCATCAATAGCAGCGGCAAAGACAACAAGCGCGGGGGGGGTT
GGGAGGCATGCCAGGCACATGACAACGCCGTCGCCACGGCGACCACCACC
ACCCGCAGCACGCCGGGTAAGAGCAGTAGGGGGAAGGGGAAGGCCATGGC
TTACATCAAGAAGGAGGAAGACGTGGAAGAAAAGGCCGCGGCTGCTACCA
CGACGACGACGACGAGGAGCAGCAGCAGGCCACGCCGCGTCCGCGAGGAG
ACACCTACGCCCTCTTCAGCGGCTGCTGCATCTTTCCTCGCTAAGAGAGC
CAAGAATGAAAAGCAGGATGAGAGCGGCGCTTTTTTTACCACTATCAACG
ACGACGACAAGGCAGCCCTCCAAGACCTGCTGAAAAAATGGATCCAACCC
GGAACGCTCCTTAAAATCACGGCCAGTGAGACAAGCCCTTATCCACAGCA
GGAACGCCCAACTCCTTATGAGGCCCTGTATGCCCGTGACCTTCTCGCGG
CTTTACACGGAGAGCCGGAGCGGGAAAAGTTAGAAGGGAATCGCAGTGGT
CAGGGGACGTTGCTTGAGAAGAGGGCTCGCTCGGTGTTGGACTCGTTGGT
ACGGACGATACTTAGTCAGAATACGACTGATGCACTGAGTAAGCGGGCTT
TCGATAATTTGAAGAAACATTTTCCGACCTATAAGCAAGTTCTGGCGGCC
AAGCCTGGAGAGGTGGAGGAGGTGATCAAGTTTGCCGGGTTGTCTGAGAT
TAAAGTGGGGAGAATCCGCGCGATTTTGACGACCGTGTTGAAGGAACGAC
CGAATGACTGCGTGGCTGGAGAACCAAGCCTGGAGTTTTTGCGAGAGATG
CCCACAGAGGAGATTAAGGAGTATCTAGGGAATTTCAAGGGAGTTGGCCC
TAAAACGATTGCATGCGTGCTCTTGTTCACCATCGGCGTGGATGATTTTG
CAGTGGATACGCATGTGTGGCACATTGCCAAGAGGCTGGGATGGGTGCCA
GGGGCAGCTTCTCGGGAAGATACATACAAACATTTGAATAATCGCATTCC
GGACTGTGTTAAGTACAGCTTGCATGTGTTGCTGGTGCTGCATGGGAAGA
AGTGCGTGTCCTGCTGTAAGGGTCGAACACAACTGGCCCCCGATGGCCCC
TGTCCGTTGGGGAGGGTCGGGAAAATGAGGGGAGAGCTAGCGGGGTTGGC
TGCCGCTGCTGCTACAGCTGCTGCTACTACTACTGTTGCTTGTGGTGGTG
TTGTTGTTGGTTGCAATAATTGTGATAAAGCAGGGGTCGTGGTGAAGAAG
GTGATGAAGGGCAGGGAGGATGTCGGGGGGAGGAAGAGGGATAAGATCAA
GGCTATTACCATAAAGGAAGAAATTGCGTGA
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Synonyms
Publications