NO01G01480.1, NO01G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01480.1
Unique NameNO01G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2199
Alignment locationchr1:373743..375941 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:373743..375941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01480.1 vs.
Match: EWM29080.1 (threonine synthase [Nannochloropsis gaditana])

HSP 1 Score: 948.0 bits (2449), Expect = 1.800e-272
Identity = 521/733 (71.08%), Postives = 584/733 (79.67%), Query Frame = 0
Query:    8 NSGTGGSSSSAGAHGGGNGDREQQSQRSPNQLRQGSISASHSISISTPQF--HNERHGSAPPSA-------HQ-PAGPQYPPTHRGVLYCSTRGARRDVTFEEVVMSGLAPDKGLYVPQEIPYISLEQLEKLRDASFVELANYIMRLFIGPEDIPPENLRVLIESSTKYFRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQFLGNMFEYFLAKKKGGPDAKLTVLGATSGDTGSAAIHGLRGKKNIQVFVLYPKGRVSEVQERQMTTVLDRNVHCIAVEGATFDDCQDIVKAAFQDEGFRDNANLGAVNSINWARVLAQITYFFHAYFRVLAKNEKAMQKEQQQQQQQQQAQAHAAQQAQRDGGGGEGEGRDGGGVSAVADAKAPPRGSNSGSSSTIAGGEGGGGGGNSEMMSQLSPNGIAEGGGGGGSGGGGGGEREGKK-KKRSKSLPKLSFSVPTGNFGDALAGYYAKAMGLPIDKILVATNENDILHRFFTSGKYWKKEVQATLSPSMDISICSNFERLLFDLAGRDPELLREWMEEFERTKKLTLPPPTLAKAREDFISCRVDQPAMIEVMLSFLRDYNYLLCPHSAVGVTAAKQLAMLNADTICLATAHHAKFLDATLKHFPLDEVDVEEIEEEVPTQLRDLDHLPTRYVTLPASAYYVKKYVLQTLEGKDNAALLRWLALGGWVWGWGSGKQGKRRRQVSMVAAAAVAVAVVGTVVSVLEGSRR 730
            NSGTG    S G  G G G+ E+Q   S +  RQG   +S S+S STPQ   H+  HG+   S        HQ P+GPQYPPTHRGVLYCSTRG  RDVTFEEVVM GLAPDKGLYVPQE+PYI  EQLEKLRDASFVELANYIMRL +GPEDIPPENLRVLIE STK FRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQFLGN+FEYF+AKKKG PD KLTVLGATSGDTGSAAI GLRGKKN+ VFVLYPKGRVSEVQERQMTTVLD+NVHCIAVE ATFDDCQ I+K+AFQD+ FR+   LGAVNSINWARVLAQ+TY+F AYFRVLA+NE+AM+KEQQQQQQQQ+              G EG GR  GGVS V ++KA   G +        GGE GG    S         G+   GGGG  GG     REG    KRS+SLPK+SFSVPTGNFGDALAGYYAKAMGLPIDKIL+ATNENDILHRFF++GKYW++EV  TLSPSMDI+I SNFERLL+ LAGRDP+LLREWMEEFERT +LTLPPPTLAKAREDF+SCRVD+P M+E MLSFLR+++YLLCPHSAVGV AAK L ML+A T+CLATAH  KFLDATLKH P++  +VEEIEE++PTQLR+LDHLPTR VTLPASA+YV+KY+LQTLEGKDN ALLRWL + G +WG+G GK G+RRR+ SM    AVAVAV+GT V V  G+RR
Sbjct:    4 NSGTGADGRSGGGIGSG-GNGEEQQAASLSHPRQGYQMSSPSVS-STPQSQPHSYGHGAGQSSQSSHHYQPHQHPSGPQYPPTHRGVLYCSTRGGCRDVTFEEVVMGGLAPDKGLYVPQELPYIPPEQLEKLRDASFVELANYIMRLVVGPEDIPPENLRVLIECSTKNFRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQFLGNVFEYFMAKKKGDPDVKLTVLGATSGDTGSAAIEGLRGKKNVNVFVLYPKGRVSEVQERQMTTVLDKNVHCIAVENATFDDCQSIIKSAFQDKEFREKVCLGAVNSINWARVLAQVTYYFFAYFRVLAQNERAMRKEQQQQQQQQRE-------------GNEG-GR--GGVSPVTESKATGSGGSGKDGGASDGGEEGGAPATSS-------GGMPNSGGGGREGG-----REGHTGSKRSRSLPKMSFSVPTGNFGDALAGYYAKAMGLPIDKILIATNENDILHRFFSNGKYWRREVHPTLSPSMDIAISSNFERLLYHLAGRDPDLLREWMEEFERTGRLTLPPPTLAKAREDFVSCRVDEPVMLETMLSFLREHHYLLCPHSAVGVAAAKGLDMLDAHTVCLATAHPGKFLDATLKHLPVEVAEVEEIEEDMPTQLRELDHLPTRSVTLPASAFYVQKYILQTLEGKDNQALLRWLEMAGLIWGYGDGKLGRRRRRWSM----AVAVAVLGTAVGVWVGARR 702          
The following BLAST results are available for this feature:
BLAST of NO01G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29080.11.800e-27271.08threonine synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01480NO01G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01480.1NO01G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01480.1.cds1NO01G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01480.1 ID=NO01G01480.1|Name=NO01G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp
ATGGCGGACAGCAGCAGCAGCAACAGCGGCACTGGAGGCAGTAGCAGCAG
CGCCGGTGCCCATGGCGGCGGGAACGGAGATCGCGAGCAGCAGTCCCAGC
GGTCGCCTAACCAACTCCGGCAAGGGTCCATCTCCGCCTCGCACTCCATC
TCTATTTCTACACCTCAATTTCACAACGAACGGCATGGCTCTGCCCCCCC
CTCAGCTCACCAACCCGCCGGCCCTCAGTACCCACCCACTCACCGGGGTG
TCCTGTACTGTTCCACCCGCGGGGCTCGTCGCGACGTCACCTTCGAAGAG
GTAGTCATGAGTGGCCTCGCCCCGGATAAAGGTTTGTATGTCCCCCAAGA
AATTCCGTACATCTCTCTGGAGCAACTCGAAAAGCTTCGTGATGCCTCCT
TCGTTGAACTGGCCAATTACATCATGCGTTTATTCATCGGCCCAGAGGAC
ATCCCTCCTGAGAACCTACGAGTACTCATTGAGAGCAGCACCAAGTACTT
CCGTGTCCATGAGGTGGCCCCAGTGAGAAAAGTGGGTCCCACGTGGGTTT
TGGAGCTCTTTCATGGCCCGACGTTCGCGTTCAAGGACGTGGCGTTGCAG
TTTTTGGGGAACATGTTTGAGTATTTCTTGGCGAAGAAGAAGGGGGGCCC
GGACGCGAAATTGACGGTGTTGGGGGCCACAAGTGGAGATACAGGCTCGG
CAGCGATTCATGGATTGAGGGGGAAGAAGAACATTCAGGTGTTCGTTCTG
TATCCCAAGGGGAGGGTGAGCGAGGTGCAGGAGAGGCAAATGACCACGGT
GTTGGACCGCAACGTCCATTGCATTGCCGTGGAAGGTGCCACCTTTGATG
ATTGCCAGGACATCGTCAAAGCGGCTTTTCAGGACGAGGGGTTCCGGGAT
AATGCCAATCTGGGGGCTGTTAATTCGATTAATTGGGCCAGGGTGCTTGC
GCAGATCACATATTTTTTCCACGCGTACTTTCGTGTGCTGGCAAAGAATG
AGAAGGCCATGCAAAAGGAGCAACAGCAACAGCAACAGCAACAGCAAGCA
CAAGCACATGCGGCACAACAAGCGCAACGGGATGGAGGAGGCGGAGAAGG
AGAAGGAAGGGATGGAGGGGGAGTGTCGGCGGTGGCGGACGCCAAGGCAC
CACCAAGAGGCAGTAACAGCGGCAGCAGTAGTACCATCGCAGGTGGGGAG
GGAGGAGGAGGAGGAGGAAATAGTGAAATGATGTCGCAGCTATCGCCCAA
TGGAATTGCTGAGGGAGGAGGAGGAGGCGGAAGTGGAGGAGGAGGAGGAG
GAGAGAGGGAAGGGAAGAAGAAAAAGCGGTCTAAGAGCTTGCCAAAACTG
TCTTTCTCGGTGCCGACGGGGAATTTCGGAGATGCATTGGCGGGGTACTA
CGCCAAAGCAATGGGGCTACCCATTGACAAGATACTGGTGGCGACGAACG
AGAATGATATTTTGCACCGTTTCTTTACGAGTGGGAAATATTGGAAGAAG
GAGGTGCAGGCGACACTGAGTCCGTCGATGGACATTTCAATTTGCAGTAA
TTTCGAACGGTTGTTGTTTGATCTGGCGGGGAGAGATCCTGAGTTGCTTA
GGGAATGGATGGAGGAGTTCGAGAGAACGAAGAAGTTGACTCTTCCTCCC
CCTACTCTAGCCAAGGCGAGGGAGGACTTCATATCCTGTCGGGTCGATCA
GCCGGCAATGATTGAGGTGATGTTGTCCTTTCTACGGGATTATAACTACT
TGTTATGCCCCCATAGCGCGGTAGGGGTGACAGCAGCTAAGCAGTTGGCC
ATGTTGAATGCGGACACCATTTGCCTCGCGACTGCGCACCACGCCAAATT
CTTGGATGCTACGTTAAAGCATTTCCCCCTTGACGAGGTCGATGTGGAGG
AGATTGAGGAGGAGGTGCCAACGCAATTGCGAGATTTGGATCATCTACCT
ACGCGGTACGTAACCTTGCCGGCGAGTGCATATTACGTGAAGAAGTACGT
GTTGCAAACATTGGAGGGGAAGGATAACGCGGCTCTCCTGAGGTGGTTGG
CACTGGGGGGTTGGGTGTGGGGGTGGGGAAGCGGAAAGCAGGGGAAGAGA
AGACGGCAAGTATCGATGGTGGCGGCTGCAGCGGTTGCTGTAGCGGTGGT
GGGGACGGTGGTGAGTGTGTTGGAGGGATCACGGAGATGGAGGAGATAG
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protein sequence of NO01G01480.1

>NO01G01480.1-protein ID=NO01G01480.1-protein|Name=NO01G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=733bp
MADSSSSNSGTGGSSSSAGAHGGGNGDREQQSQRSPNQLRQGSISASHSI
SISTPQFHNERHGSAPPSAHQPAGPQYPPTHRGVLYCSTRGARRDVTFEE
VVMSGLAPDKGLYVPQEIPYISLEQLEKLRDASFVELANYIMRLFIGPED
IPPENLRVLIESSTKYFRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQ
FLGNMFEYFLAKKKGGPDAKLTVLGATSGDTGSAAIHGLRGKKNIQVFVL
YPKGRVSEVQERQMTTVLDRNVHCIAVEGATFDDCQDIVKAAFQDEGFRD
NANLGAVNSINWARVLAQITYFFHAYFRVLAKNEKAMQKEQQQQQQQQQA
QAHAAQQAQRDGGGGEGEGRDGGGVSAVADAKAPPRGSNSGSSSTIAGGE
GGGGGGNSEMMSQLSPNGIAEGGGGGGSGGGGGGEREGKKKKRSKSLPKL
SFSVPTGNFGDALAGYYAKAMGLPIDKILVATNENDILHRFFTSGKYWKK
EVQATLSPSMDISICSNFERLLFDLAGRDPELLREWMEEFERTKKLTLPP
PTLAKAREDFISCRVDQPAMIEVMLSFLRDYNYLLCPHSAVGVTAAKQLA
MLNADTICLATAHHAKFLDATLKHFPLDEVDVEEIEEEVPTQLRDLDHLP
TRYVTLPASAYYVKKYVLQTLEGKDNAALLRWLALGGWVWGWGSGKQGKR
RRQVSMVAAAAVAVAVVGTVVSVLEGSRRWRR*
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mRNA from alignment at chr1:373743..375941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01480.1 ID=NO01G01480.1|Name=NO01G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp|location=Sequence derived from alignment at chr1:373743..375941- (Nannochloropsis oceanica)
ATGGCGGACAGCAGCAGCAGCAACAGCGGCACTGGAGGCAGTAGCAGCAG CGCCGGTGCCCATGGCGGCGGGAACGGAGATCGCGAGCAGCAGTCCCAGC GGTCGCCTAACCAACTCCGGCAAGGGTCCATCTCCGCCTCGCACTCCATC TCTATTTCTACACCTCAATTTCACAACGAACGGCATGGCTCTGCCCCCCC CTCAGCTCACCAACCCGCCGGCCCTCAGTACCCACCCACTCACCGGGGTG TCCTGTACTGTTCCACCCGCGGGGCTCGTCGCGACGTCACCTTCGAAGAG GTAGTCATGAGTGGCCTCGCCCCGGATAAAGGTTTGTATGTCCCCCAAGA AATTCCGTACATCTCTCTGGAGCAACTCGAAAAGCTTCGTGATGCCTCCT TCGTTGAACTGGCCAATTACATCATGCGTTTATTCATCGGCCCAGAGGAC ATCCCTCCTGAGAACCTACGAGTACTCATTGAGAGCAGCACCAAGTACTT CCGTGTCCATGAGGTGGCCCCAGTGAGAAAAGTGGGTCCCACGTGGGTTT TGGAGCTCTTTCATGGCCCGACGTTCGCGTTCAAGGACGTGGCGTTGCAG TTTTTGGGGAACATGTTTGAGTATTTCTTGGCGAAGAAGAAGGGGGGCCC GGACGCGAAATTGACGGTGTTGGGGGCCACAAGTGGAGATACAGGCTCGG CAGCGATTCATGGATTGAGGGGGAAGAAGAACATTCAGGTGTTCGTTCTG TATCCCAAGGGGAGGGTGAGCGAGGTGCAGGAGAGGCAAATGACCACGGT GTTGGACCGCAACGTCCATTGCATTGCCGTGGAAGGTGCCACCTTTGATG ATTGCCAGGACATCGTCAAAGCGGCTTTTCAGGACGAGGGGTTCCGGGAT AATGCCAATCTGGGGGCTGTTAATTCGATTAATTGGGCCAGGGTGCTTGC GCAGATCACATATTTTTTCCACGCGTACTTTCGTGTGCTGGCAAAGAATG AGAAGGCCATGCAAAAGGAGCAACAGCAACAGCAACAGCAACAGCAAGCA CAAGCACATGCGGCACAACAAGCGCAACGGGATGGAGGAGGCGGAGAAGG AGAAGGAAGGGATGGAGGGGGAGTGTCGGCGGTGGCGGACGCCAAGGCAC CACCAAGAGGCAGTAACAGCGGCAGCAGTAGTACCATCGCAGGTGGGGAG GGAGGAGGAGGAGGAGGAAATAGTGAAATGATGTCGCAGCTATCGCCCAA TGGAATTGCTGAGGGAGGAGGAGGAGGCGGAAGTGGAGGAGGAGGAGGAG GAGAGAGGGAAGGGAAGAAGAAAAAGCGGTCTAAGAGCTTGCCAAAACTG TCTTTCTCGGTGCCGACGGGGAATTTCGGAGATGCATTGGCGGGGTACTA CGCCAAAGCAATGGGGCTACCCATTGACAAGATACTGGTGGCGACGAACG AGAATGATATTTTGCACCGTTTCTTTACGAGTGGGAAATATTGGAAGAAG GAGGTGCAGGCGACACTGAGTCCGTCGATGGACATTTCAATTTGCAGTAA TTTCGAACGGTTGTTGTTTGATCTGGCGGGGAGAGATCCTGAGTTGCTTA GGGAATGGATGGAGGAGTTCGAGAGAACGAAGAAGTTGACTCTTCCTCCC CCTACTCTAGCCAAGGCGAGGGAGGACTTCATATCCTGTCGGGTCGATCA GCCGGCAATGATTGAGGTGATGTTGTCCTTTCTACGGGATTATAACTACT TGTTATGCCCCCATAGCGCGGTAGGGGTGACAGCAGCTAAGCAGTTGGCC ATGTTGAATGCGGACACCATTTGCCTCGCGACTGCGCACCACGCCAAATT CTTGGATGCTACGTTAAAGCATTTCCCCCTTGACGAGGTCGATGTGGAGG AGATTGAGGAGGAGGTGCCAACGCAATTGCGAGATTTGGATCATCTACCT ACGCGGTACGTAACCTTGCCGGCGAGTGCATATTACGTGAAGAAGTACGT GTTGCAAACATTGGAGGGGAAGGATAACGCGGCTCTCCTGAGGTGGTTGG CACTGGGGGGTTGGGTGTGGGGGTGGGGAAGCGGAAAGCAGGGGAAGAGA AGACGGCAAGTATCGATGGTGGCGGCTGCAGCGGTTGCTGTAGCGGTGGT GGGGACGGTGGTGAGTGTGTTGGAGGGATCACGGAGATGGAGGAGATAG
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Coding sequence (CDS) from alignment at chr1:373743..375941-

>NO01G01480.1 ID=NO01G01480.1|Name=NO01G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=2199bp|location=Sequence derived from alignment at chr1:373743..375941- (Nannochloropsis oceanica)
ATGGCGGACAGCAGCAGCAGCAACAGCGGCACTGGAGGCAGTAGCAGCAG
CGCCGGTGCCCATGGCGGCGGGAACGGAGATCGCGAGCAGCAGTCCCAGC
GGTCGCCTAACCAACTCCGGCAAGGGTCCATCTCCGCCTCGCACTCCATC
TCTATTTCTACACCTCAATTTCACAACGAACGGCATGGCTCTGCCCCCCC
CTCAGCTCACCAACCCGCCGGCCCTCAGTACCCACCCACTCACCGGGGTG
TCCTGTACTGTTCCACCCGCGGGGCTCGTCGCGACGTCACCTTCGAAGAG
GTAGTCATGAGTGGCCTCGCCCCGGATAAAGGTTTGTATGTCCCCCAAGA
AATTCCGTACATCTCTCTGGAGCAACTCGAAAAGCTTCGTGATGCCTCCT
TCGTTGAACTGGCCAATTACATCATGCGTTTATTCATCGGCCCAGAGGAC
ATCCCTCCTGAGAACCTACGAGTACTCATTGAGAGCAGCACCAAGTACTT
CCGTGTCCATGAGGTGGCCCCAGTGAGAAAAGTGGGTCCCACGTGGGTTT
TGGAGCTCTTTCATGGCCCGACGTTCGCGTTCAAGGACGTGGCGTTGCAG
TTTTTGGGGAACATGTTTGAGTATTTCTTGGCGAAGAAGAAGGGGGGCCC
GGACGCGAAATTGACGGTGTTGGGGGCCACAAGTGGAGATACAGGCTCGG
CAGCGATTCATGGATTGAGGGGGAAGAAGAACATTCAGGTGTTCGTTCTG
TATCCCAAGGGGAGGGTGAGCGAGGTGCAGGAGAGGCAAATGACCACGGT
GTTGGACCGCAACGTCCATTGCATTGCCGTGGAAGGTGCCACCTTTGATG
ATTGCCAGGACATCGTCAAAGCGGCTTTTCAGGACGAGGGGTTCCGGGAT
AATGCCAATCTGGGGGCTGTTAATTCGATTAATTGGGCCAGGGTGCTTGC
GCAGATCACATATTTTTTCCACGCGTACTTTCGTGTGCTGGCAAAGAATG
AGAAGGCCATGCAAAAGGAGCAACAGCAACAGCAACAGCAACAGCAAGCA
CAAGCACATGCGGCACAACAAGCGCAACGGGATGGAGGAGGCGGAGAAGG
AGAAGGAAGGGATGGAGGGGGAGTGTCGGCGGTGGCGGACGCCAAGGCAC
CACCAAGAGGCAGTAACAGCGGCAGCAGTAGTACCATCGCAGGTGGGGAG
GGAGGAGGAGGAGGAGGAAATAGTGAAATGATGTCGCAGCTATCGCCCAA
TGGAATTGCTGAGGGAGGAGGAGGAGGCGGAAGTGGAGGAGGAGGAGGAG
GAGAGAGGGAAGGGAAGAAGAAAAAGCGGTCTAAGAGCTTGCCAAAACTG
TCTTTCTCGGTGCCGACGGGGAATTTCGGAGATGCATTGGCGGGGTACTA
CGCCAAAGCAATGGGGCTACCCATTGACAAGATACTGGTGGCGACGAACG
AGAATGATATTTTGCACCGTTTCTTTACGAGTGGGAAATATTGGAAGAAG
GAGGTGCAGGCGACACTGAGTCCGTCGATGGACATTTCAATTTGCAGTAA
TTTCGAACGGTTGTTGTTTGATCTGGCGGGGAGAGATCCTGAGTTGCTTA
GGGAATGGATGGAGGAGTTCGAGAGAACGAAGAAGTTGACTCTTCCTCCC
CCTACTCTAGCCAAGGCGAGGGAGGACTTCATATCCTGTCGGGTCGATCA
GCCGGCAATGATTGAGGTGATGTTGTCCTTTCTACGGGATTATAACTACT
TGTTATGCCCCCATAGCGCGGTAGGGGTGACAGCAGCTAAGCAGTTGGCC
ATGTTGAATGCGGACACCATTTGCCTCGCGACTGCGCACCACGCCAAATT
CTTGGATGCTACGTTAAAGCATTTCCCCCTTGACGAGGTCGATGTGGAGG
AGATTGAGGAGGAGGTGCCAACGCAATTGCGAGATTTGGATCATCTACCT
ACGCGGTACGTAACCTTGCCGGCGAGTGCATATTACGTGAAGAAGTACGT
GTTGCAAACATTGGAGGGGAAGGATAACGCGGCTCTCCTGAGGTGGTTGG
CACTGGGGGGTTGGGTGTGGGGGTGGGGAAGCGGAAAGCAGGGGAAGAGA
AGACGGCAAGTATCGATGGTGGCGGCTGCAGCGGTTGCTGTAGCGGTGGT
GGGGACGGTGGTGAGTGTGTTGGAGGGATCACGGAGATGGAGGAGATAG
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Synonyms
Publications