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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:373743..375941 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01480.1 vs.
Match: EWM29080.1 (threonine synthase [Nannochloropsis gaditana]) HSP 1 Score: 948.0 bits (2449), Expect = 1.800e-272 Identity = 521/733 (71.08%), Postives = 584/733 (79.67%), Query Frame = 0
Query: 8 NSGTGGSSSSAGAHGGGNGDREQQSQRSPNQLRQGSISASHSISISTPQF--HNERHGSAPPSA-------HQ-PAGPQYPPTHRGVLYCSTRGARRDVTFEEVVMSGLAPDKGLYVPQEIPYISLEQLEKLRDASFVELANYIMRLFIGPEDIPPENLRVLIESSTKYFRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQFLGNMFEYFLAKKKGGPDAKLTVLGATSGDTGSAAIHGLRGKKNIQVFVLYPKGRVSEVQERQMTTVLDRNVHCIAVEGATFDDCQDIVKAAFQDEGFRDNANLGAVNSINWARVLAQITYFFHAYFRVLAKNEKAMQKEQQQQQQQQQAQAHAAQQAQRDGGGGEGEGRDGGGVSAVADAKAPPRGSNSGSSSTIAGGEGGGGGGNSEMMSQLSPNGIAEGGGGGGSGGGGGGEREGKK-KKRSKSLPKLSFSVPTGNFGDALAGYYAKAMGLPIDKILVATNENDILHRFFTSGKYWKKEVQATLSPSMDISICSNFERLLFDLAGRDPELLREWMEEFERTKKLTLPPPTLAKAREDFISCRVDQPAMIEVMLSFLRDYNYLLCPHSAVGVTAAKQLAMLNADTICLATAHHAKFLDATLKHFPLDEVDVEEIEEEVPTQLRDLDHLPTRYVTLPASAYYVKKYVLQTLEGKDNAALLRWLALGGWVWGWGSGKQGKRRRQVSMVAAAAVAVAVVGTVVSVLEGSRR 730
NSGTG S G G G G+ E+Q S + RQG +S S+S STPQ H+ HG+ S HQ P+GPQYPPTHRGVLYCSTRG RDVTFEEVVM GLAPDKGLYVPQE+PYI EQLEKLRDASFVELANYIMRL +GPEDIPPENLRVLIE STK FRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQFLGN+FEYF+AKKKG PD KLTVLGATSGDTGSAAI GLRGKKN+ VFVLYPKGRVSEVQERQMTTVLD+NVHCIAVE ATFDDCQ I+K+AFQD+ FR+ LGAVNSINWARVLAQ+TY+F AYFRVLA+NE+AM+KEQQQQQQQQ+ G EG GR GGVS V ++KA G + GGE GG S G+ GGGG GG REG KRS+SLPK+SFSVPTGNFGDALAGYYAKAMGLPIDKIL+ATNENDILHRFF++GKYW++EV TLSPSMDI+I SNFERLL+ LAGRDP+LLREWMEEFERT +LTLPPPTLAKAREDF+SCRVD+P M+E MLSFLR+++YLLCPHSAVGV AAK L ML+A T+CLATAH KFLDATLKH P++ +VEEIEE++PTQLR+LDHLPTR VTLPASA+YV+KY+LQTLEGKDN ALLRWL + G +WG+G GK G+RRR+ SM AVAVAV+GT V V G+RR
Sbjct: 4 NSGTGADGRSGGGIGSG-GNGEEQQAASLSHPRQGYQMSSPSVS-STPQSQPHSYGHGAGQSSQSSHHYQPHQHPSGPQYPPTHRGVLYCSTRGGCRDVTFEEVVMGGLAPDKGLYVPQELPYIPPEQLEKLRDASFVELANYIMRLVVGPEDIPPENLRVLIECSTKNFRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQFLGNVFEYFMAKKKGDPDVKLTVLGATSGDTGSAAIEGLRGKKNVNVFVLYPKGRVSEVQERQMTTVLDKNVHCIAVENATFDDCQSIIKSAFQDKEFREKVCLGAVNSINWARVLAQVTYYFFAYFRVLAQNERAMRKEQQQQQQQQRE-------------GNEG-GR--GGVSPVTESKATGSGGSGKDGGASDGGEEGGAPATSS-------GGMPNSGGGGREGG-----REGHTGSKRSRSLPKMSFSVPTGNFGDALAGYYAKAMGLPIDKILIATNENDILHRFFSNGKYWRREVHPTLSPSMDIAISSNFERLLYHLAGRDPDLLREWMEEFERTGRLTLPPPTLAKAREDFVSCRVDEPVMLETMLSFLREHHYLLCPHSAVGVAAAKGLDMLDAHTVCLATAHPGKFLDATLKHLPVEVAEVEEIEEDMPTQLRELDHLPTRSVTLPASAFYVQKYILQTLEGKDNQALLRWLEMAGLIWGYGDGKLGRRRRRWSM----AVAVAVLGTAVGVWVGARR 702
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01480.1 ID=NO01G01480.1|Name=NO01G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp ATGGCGGACAGCAGCAGCAGCAACAGCGGCACTGGAGGCAGTAGCAGCAG CGCCGGTGCCCATGGCGGCGGGAACGGAGATCGCGAGCAGCAGTCCCAGC GGTCGCCTAACCAACTCCGGCAAGGGTCCATCTCCGCCTCGCACTCCATC TCTATTTCTACACCTCAATTTCACAACGAACGGCATGGCTCTGCCCCCCC CTCAGCTCACCAACCCGCCGGCCCTCAGTACCCACCCACTCACCGGGGTG TCCTGTACTGTTCCACCCGCGGGGCTCGTCGCGACGTCACCTTCGAAGAG GTAGTCATGAGTGGCCTCGCCCCGGATAAAGGTTTGTATGTCCCCCAAGA AATTCCGTACATCTCTCTGGAGCAACTCGAAAAGCTTCGTGATGCCTCCT TCGTTGAACTGGCCAATTACATCATGCGTTTATTCATCGGCCCAGAGGAC ATCCCTCCTGAGAACCTACGAGTACTCATTGAGAGCAGCACCAAGTACTT CCGTGTCCATGAGGTGGCCCCAGTGAGAAAAGTGGGTCCCACGTGGGTTT TGGAGCTCTTTCATGGCCCGACGTTCGCGTTCAAGGACGTGGCGTTGCAG TTTTTGGGGAACATGTTTGAGTATTTCTTGGCGAAGAAGAAGGGGGGCCC GGACGCGAAATTGACGGTGTTGGGGGCCACAAGTGGAGATACAGGCTCGG CAGCGATTCATGGATTGAGGGGGAAGAAGAACATTCAGGTGTTCGTTCTG TATCCCAAGGGGAGGGTGAGCGAGGTGCAGGAGAGGCAAATGACCACGGT GTTGGACCGCAACGTCCATTGCATTGCCGTGGAAGGTGCCACCTTTGATG ATTGCCAGGACATCGTCAAAGCGGCTTTTCAGGACGAGGGGTTCCGGGAT AATGCCAATCTGGGGGCTGTTAATTCGATTAATTGGGCCAGGGTGCTTGC GCAGATCACATATTTTTTCCACGCGTACTTTCGTGTGCTGGCAAAGAATG AGAAGGCCATGCAAAAGGAGCAACAGCAACAGCAACAGCAACAGCAAGCA CAAGCACATGCGGCACAACAAGCGCAACGGGATGGAGGAGGCGGAGAAGG AGAAGGAAGGGATGGAGGGGGAGTGTCGGCGGTGGCGGACGCCAAGGCAC CACCAAGAGGCAGTAACAGCGGCAGCAGTAGTACCATCGCAGGTGGGGAG GGAGGAGGAGGAGGAGGAAATAGTGAAATGATGTCGCAGCTATCGCCCAA TGGAATTGCTGAGGGAGGAGGAGGAGGCGGAAGTGGAGGAGGAGGAGGAG GAGAGAGGGAAGGGAAGAAGAAAAAGCGGTCTAAGAGCTTGCCAAAACTG TCTTTCTCGGTGCCGACGGGGAATTTCGGAGATGCATTGGCGGGGTACTA CGCCAAAGCAATGGGGCTACCCATTGACAAGATACTGGTGGCGACGAACG AGAATGATATTTTGCACCGTTTCTTTACGAGTGGGAAATATTGGAAGAAG GAGGTGCAGGCGACACTGAGTCCGTCGATGGACATTTCAATTTGCAGTAA TTTCGAACGGTTGTTGTTTGATCTGGCGGGGAGAGATCCTGAGTTGCTTA GGGAATGGATGGAGGAGTTCGAGAGAACGAAGAAGTTGACTCTTCCTCCC CCTACTCTAGCCAAGGCGAGGGAGGACTTCATATCCTGTCGGGTCGATCA GCCGGCAATGATTGAGGTGATGTTGTCCTTTCTACGGGATTATAACTACT TGTTATGCCCCCATAGCGCGGTAGGGGTGACAGCAGCTAAGCAGTTGGCC ATGTTGAATGCGGACACCATTTGCCTCGCGACTGCGCACCACGCCAAATT CTTGGATGCTACGTTAAAGCATTTCCCCCTTGACGAGGTCGATGTGGAGG AGATTGAGGAGGAGGTGCCAACGCAATTGCGAGATTTGGATCATCTACCT ACGCGGTACGTAACCTTGCCGGCGAGTGCATATTACGTGAAGAAGTACGT GTTGCAAACATTGGAGGGGAAGGATAACGCGGCTCTCCTGAGGTGGTTGG CACTGGGGGGTTGGGTGTGGGGGTGGGGAAGCGGAAAGCAGGGGAAGAGA AGACGGCAAGTATCGATGGTGGCGGCTGCAGCGGTTGCTGTAGCGGTGGT GGGGACGGTGGTGAGTGTGTTGGAGGGATCACGGAGATGGAGGAGATAG back to topprotein sequence of NO01G01480.1 >NO01G01480.1-protein ID=NO01G01480.1-protein|Name=NO01G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=733bp MADSSSSNSGTGGSSSSAGAHGGGNGDREQQSQRSPNQLRQGSISASHSI SISTPQFHNERHGSAPPSAHQPAGPQYPPTHRGVLYCSTRGARRDVTFEE VVMSGLAPDKGLYVPQEIPYISLEQLEKLRDASFVELANYIMRLFIGPED IPPENLRVLIESSTKYFRVHEVAPVRKVGPTWVLELFHGPTFAFKDVALQ FLGNMFEYFLAKKKGGPDAKLTVLGATSGDTGSAAIHGLRGKKNIQVFVL YPKGRVSEVQERQMTTVLDRNVHCIAVEGATFDDCQDIVKAAFQDEGFRD NANLGAVNSINWARVLAQITYFFHAYFRVLAKNEKAMQKEQQQQQQQQQA QAHAAQQAQRDGGGGEGEGRDGGGVSAVADAKAPPRGSNSGSSSTIAGGE GGGGGGNSEMMSQLSPNGIAEGGGGGGSGGGGGGEREGKKKKRSKSLPKL SFSVPTGNFGDALAGYYAKAMGLPIDKILVATNENDILHRFFTSGKYWKK EVQATLSPSMDISICSNFERLLFDLAGRDPELLREWMEEFERTKKLTLPP PTLAKAREDFISCRVDQPAMIEVMLSFLRDYNYLLCPHSAVGVTAAKQLA MLNADTICLATAHHAKFLDATLKHFPLDEVDVEEIEEEVPTQLRDLDHLP TRYVTLPASAYYVKKYVLQTLEGKDNAALLRWLALGGWVWGWGSGKQGKR RRQVSMVAAAAVAVAVVGTVVSVLEGSRRWRR* back to topmRNA from alignment at chr1:373743..375941- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01480.1 ID=NO01G01480.1|Name=NO01G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp|location=Sequence derived from alignment at chr1:373743..375941- (Nannochloropsis oceanica) ATGGCGGACAGCAGCAGCAGCAACAGCGGCACTGGAGGCAGTAGCAGCAG
CGCCGGTGCCCATGGCGGCGGGAACGGAGATCGCGAGCAGCAGTCCCAGC
GGTCGCCTAACCAACTCCGGCAAGGGTCCATCTCCGCCTCGCACTCCATC
TCTATTTCTACACCTCAATTTCACAACGAACGGCATGGCTCTGCCCCCCC
CTCAGCTCACCAACCCGCCGGCCCTCAGTACCCACCCACTCACCGGGGTG
TCCTGTACTGTTCCACCCGCGGGGCTCGTCGCGACGTCACCTTCGAAGAG
GTAGTCATGAGTGGCCTCGCCCCGGATAAAGGTTTGTATGTCCCCCAAGA
AATTCCGTACATCTCTCTGGAGCAACTCGAAAAGCTTCGTGATGCCTCCT
TCGTTGAACTGGCCAATTACATCATGCGTTTATTCATCGGCCCAGAGGAC
ATCCCTCCTGAGAACCTACGAGTACTCATTGAGAGCAGCACCAAGTACTT
CCGTGTCCATGAGGTGGCCCCAGTGAGAAAAGTGGGTCCCACGTGGGTTT
TGGAGCTCTTTCATGGCCCGACGTTCGCGTTCAAGGACGTGGCGTTGCAG
TTTTTGGGGAACATGTTTGAGTATTTCTTGGCGAAGAAGAAGGGGGGCCC
GGACGCGAAATTGACGGTGTTGGGGGCCACAAGTGGAGATACAGGCTCGG
CAGCGATTCATGGATTGAGGGGGAAGAAGAACATTCAGGTGTTCGTTCTG
TATCCCAAGGGGAGGGTGAGCGAGGTGCAGGAGAGGCAAATGACCACGGT
GTTGGACCGCAACGTCCATTGCATTGCCGTGGAAGGTGCCACCTTTGATG
ATTGCCAGGACATCGTCAAAGCGGCTTTTCAGGACGAGGGGTTCCGGGAT
AATGCCAATCTGGGGGCTGTTAATTCGATTAATTGGGCCAGGGTGCTTGC
GCAGATCACATATTTTTTCCACGCGTACTTTCGTGTGCTGGCAAAGAATG
AGAAGGCCATGCAAAAGGAGCAACAGCAACAGCAACAGCAACAGCAAGCA
CAAGCACATGCGGCACAACAAGCGCAACGGGATGGAGGAGGCGGAGAAGG
AGAAGGAAGGGATGGAGGGGGAGTGTCGGCGGTGGCGGACGCCAAGGCAC
CACCAAGAGGCAGTAACAGCGGCAGCAGTAGTACCATCGCAGGTGGGGAG
GGAGGAGGAGGAGGAGGAAATAGTGAAATGATGTCGCAGCTATCGCCCAA
TGGAATTGCTGAGGGAGGAGGAGGAGGCGGAAGTGGAGGAGGAGGAGGAG
GAGAGAGGGAAGGGAAGAAGAAAAAGCGGTCTAAGAGCTTGCCAAAACTG
TCTTTCTCGGTGCCGACGGGGAATTTCGGAGATGCATTGGCGGGGTACTA
CGCCAAAGCAATGGGGCTACCCATTGACAAGATACTGGTGGCGACGAACG
AGAATGATATTTTGCACCGTTTCTTTACGAGTGGGAAATATTGGAAGAAG
GAGGTGCAGGCGACACTGAGTCCGTCGATGGACATTTCAATTTGCAGTAA
TTTCGAACGGTTGTTGTTTGATCTGGCGGGGAGAGATCCTGAGTTGCTTA
GGGAATGGATGGAGGAGTTCGAGAGAACGAAGAAGTTGACTCTTCCTCCC
CCTACTCTAGCCAAGGCGAGGGAGGACTTCATATCCTGTCGGGTCGATCA
GCCGGCAATGATTGAGGTGATGTTGTCCTTTCTACGGGATTATAACTACT
TGTTATGCCCCCATAGCGCGGTAGGGGTGACAGCAGCTAAGCAGTTGGCC
ATGTTGAATGCGGACACCATTTGCCTCGCGACTGCGCACCACGCCAAATT
CTTGGATGCTACGTTAAAGCATTTCCCCCTTGACGAGGTCGATGTGGAGG
AGATTGAGGAGGAGGTGCCAACGCAATTGCGAGATTTGGATCATCTACCT
ACGCGGTACGTAACCTTGCCGGCGAGTGCATATTACGTGAAGAAGTACGT
GTTGCAAACATTGGAGGGGAAGGATAACGCGGCTCTCCTGAGGTGGTTGG
CACTGGGGGGTTGGGTGTGGGGGTGGGGAAGCGGAAAGCAGGGGAAGAGA
AGACGGCAAGTATCGATGGTGGCGGCTGCAGCGGTTGCTGTAGCGGTGGT
GGGGACGGTGGTGAGTGTGTTGGAGGGATCACGGAGATGGAGGAGATAG back to topCoding sequence (CDS) from alignment at chr1:373743..375941- >NO01G01480.1 ID=NO01G01480.1|Name=NO01G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=2199bp|location=Sequence derived from alignment at chr1:373743..375941- (Nannochloropsis oceanica) ATGGCGGACAGCAGCAGCAGCAACAGCGGCACTGGAGGCAGTAGCAGCAG CGCCGGTGCCCATGGCGGCGGGAACGGAGATCGCGAGCAGCAGTCCCAGC GGTCGCCTAACCAACTCCGGCAAGGGTCCATCTCCGCCTCGCACTCCATC TCTATTTCTACACCTCAATTTCACAACGAACGGCATGGCTCTGCCCCCCC CTCAGCTCACCAACCCGCCGGCCCTCAGTACCCACCCACTCACCGGGGTG TCCTGTACTGTTCCACCCGCGGGGCTCGTCGCGACGTCACCTTCGAAGAG GTAGTCATGAGTGGCCTCGCCCCGGATAAAGGTTTGTATGTCCCCCAAGA AATTCCGTACATCTCTCTGGAGCAACTCGAAAAGCTTCGTGATGCCTCCT TCGTTGAACTGGCCAATTACATCATGCGTTTATTCATCGGCCCAGAGGAC ATCCCTCCTGAGAACCTACGAGTACTCATTGAGAGCAGCACCAAGTACTT CCGTGTCCATGAGGTGGCCCCAGTGAGAAAAGTGGGTCCCACGTGGGTTT TGGAGCTCTTTCATGGCCCGACGTTCGCGTTCAAGGACGTGGCGTTGCAG TTTTTGGGGAACATGTTTGAGTATTTCTTGGCGAAGAAGAAGGGGGGCCC GGACGCGAAATTGACGGTGTTGGGGGCCACAAGTGGAGATACAGGCTCGG CAGCGATTCATGGATTGAGGGGGAAGAAGAACATTCAGGTGTTCGTTCTG TATCCCAAGGGGAGGGTGAGCGAGGTGCAGGAGAGGCAAATGACCACGGT GTTGGACCGCAACGTCCATTGCATTGCCGTGGAAGGTGCCACCTTTGATG ATTGCCAGGACATCGTCAAAGCGGCTTTTCAGGACGAGGGGTTCCGGGAT AATGCCAATCTGGGGGCTGTTAATTCGATTAATTGGGCCAGGGTGCTTGC GCAGATCACATATTTTTTCCACGCGTACTTTCGTGTGCTGGCAAAGAATG AGAAGGCCATGCAAAAGGAGCAACAGCAACAGCAACAGCAACAGCAAGCA CAAGCACATGCGGCACAACAAGCGCAACGGGATGGAGGAGGCGGAGAAGG AGAAGGAAGGGATGGAGGGGGAGTGTCGGCGGTGGCGGACGCCAAGGCAC CACCAAGAGGCAGTAACAGCGGCAGCAGTAGTACCATCGCAGGTGGGGAG GGAGGAGGAGGAGGAGGAAATAGTGAAATGATGTCGCAGCTATCGCCCAA TGGAATTGCTGAGGGAGGAGGAGGAGGCGGAAGTGGAGGAGGAGGAGGAG GAGAGAGGGAAGGGAAGAAGAAAAAGCGGTCTAAGAGCTTGCCAAAACTG TCTTTCTCGGTGCCGACGGGGAATTTCGGAGATGCATTGGCGGGGTACTA CGCCAAAGCAATGGGGCTACCCATTGACAAGATACTGGTGGCGACGAACG AGAATGATATTTTGCACCGTTTCTTTACGAGTGGGAAATATTGGAAGAAG GAGGTGCAGGCGACACTGAGTCCGTCGATGGACATTTCAATTTGCAGTAA TTTCGAACGGTTGTTGTTTGATCTGGCGGGGAGAGATCCTGAGTTGCTTA GGGAATGGATGGAGGAGTTCGAGAGAACGAAGAAGTTGACTCTTCCTCCC CCTACTCTAGCCAAGGCGAGGGAGGACTTCATATCCTGTCGGGTCGATCA GCCGGCAATGATTGAGGTGATGTTGTCCTTTCTACGGGATTATAACTACT TGTTATGCCCCCATAGCGCGGTAGGGGTGACAGCAGCTAAGCAGTTGGCC ATGTTGAATGCGGACACCATTTGCCTCGCGACTGCGCACCACGCCAAATT CTTGGATGCTACGTTAAAGCATTTCCCCCTTGACGAGGTCGATGTGGAGG AGATTGAGGAGGAGGTGCCAACGCAATTGCGAGATTTGGATCATCTACCT ACGCGGTACGTAACCTTGCCGGCGAGTGCATATTACGTGAAGAAGTACGT GTTGCAAACATTGGAGGGGAAGGATAACGCGGCTCTCCTGAGGTGGTTGG CACTGGGGGGTTGGGTGTGGGGGTGGGGAAGCGGAAAGCAGGGGAAGAGA AGACGGCAAGTATCGATGGTGGCGGCTGCAGCGGTTGCTGTAGCGGTGGT GGGGACGGTGGTGAGTGTGTTGGAGGGATCACGGAGATGGAGGAGATAG back to top
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