NO01G01460.1, NO01G01460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01460.1
Unique NameNO01G01460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1575
Alignment locationchr1:371595..373169 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:371595..373169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01460.1 vs.
Match: EWM29101.1 (short-chain dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 609.0 bits (1569), Expect = 1.300e-170
Identity = 325/496 (65.52%), Postives = 376/496 (75.81%), Query Frame = 0 
Query:    2 LLSCSAAFSQLEALYLAGGLASLYAILVGLWRWGTYEARTPETYVPLAGLAVAPLLPFLPLALFVEKGKTGAIFGVV-TAVLLGWDGFIIHRIWRQFVVGPRFETVDLRGKTAIVTGANTGIGRETSRCLAEMGAQVILACRSRARAEEAIRVILKEAGTKIDPCQLEFWTLDVSSLQSVGDFAAIFQERKGDGGLDILINNAGVMLNEKMVTSEGLEATMATNHYGHFLLTLLLFPELEKVSDGRIVNVSSSLHKAPTSFNFDDPLYESSAYSLFGAYGQSKLANVLFTFELQRRLDALQRDRAKIIGRRGGRDGGG----KVMTANAVHPGNVQTEVARNMAWPFYWGQRLCSPLLWCFSKNPLQGAYTSVHAATAPSLRGVGGLYFVNSEATADVSAVAKDPQVAERLWEMSEGVCGLATPAAGTEPVAMAAAPAIAKKSSPTRRRRESVSAGANTPGKKA--MTPKKSDVANGGGNGGRKSKSPARRRSGKV 491
            ++  S   S L  + +  G+A LYA+LVGLWRW TYEART ETY+ LA LA APLLP         K   G  + ++  A+LLGWD +++HRIWR FVVGPRF++VDL GK AIVTGANTGIGRETSR LAEMGA+VILACRS+ RAEEAIR IL E+G+KI P QLEFW LDVSSLQSVGDFAA FQE+ G  GLDILINNAGVMLNE+ +TSEGLEAT+ATNH+GHFLLTLLLFPELEKVSDGR+VNVSSSLHK P +FNFDDPLYESSAYSLFGAYGQSKLANVLFTFELQRRL+ LQ + A  +GR+G R GG     +V+TANAVHPGNVQTEVARNM W  YWGQR+CSP+LWCFSKNP QGAYTSVH AT+P+LRG+GG +FVN + T DVSAVA+DP VA RLW MSE  CGL T A G   V  ++       S P ++R+ +  AG  + G +A   TPK S      G  G K  SP  RRS ++
Sbjct:   10 MMPLSTDVSPLNVVCVGSGIAFLYAVLVGLWRWCTYEARTAETYLRLAALAAAPLLPLCMFVFTSHKSLEGCKWHLLLAALLLGWDAYVLHRIWRNFVVGPRFQSVDLHGKVAIVTGANTGIGRETSRFLAEMGAKVILACRSKDRAEEAIRAILWESGSKIKPSQLEFWPLDVSSLQSVGDFAAAFQEKAGHKGLDILINNAGVMLNERRLTSEGLEATLATNHFGHFLLTLLLFPELEKVSDGRVVNVSSSLHKVPRAFNFDDPLYESSAYSLFGAYGQSKLANVLFTFELQRRLEVLQSNEANKVGRKGERGGGDLAVRRVVTANAVHPGNVQTEVARNMPWYLYWGQRICSPILWCFSKNPAQGAYTSVHVATSPALRGIGGKFFVNCDVTGDVSAVARDPSVAGRLWAMSEEACGL-TAATGDATVGSSSV-----NSGPRKKRKTNAPAGTMSNGDEARHTTPKTSLRNVRTGANGSKGTSPGVRRSARL 499
The following BLAST results are available for this feature:
BLAST of NO01G01460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29101.11.300e-17065.52short-chain dehydrogenase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01460NO01G01460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01460.1NO01G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01460.1.cds1NO01G01460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01460.1 ID=NO01G01460.1|Name=NO01G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
ATGTTGCTATCTTGCTCTGCCGCCTTCTCCCAGCTCGAAGCGCTTTACCT
GGCGGGAGGGCTCGCCTCTCTGTACGCTATCTTGGTAGGGCTTTGGCGCT
GGGGCACCTATGAGGCGAGGACTCCCGAAACCTACGTGCCTTTGGCCGGC
TTGGCTGTCGCGCCGCTCCTCCCGTTCCTGCCTCTGGCTTTGTTTGTAGA
GAAAGGAAAGACTGGAGCCATTTTTGGGGTAGTGACAGCGGTGCTCTTGG
GATGGGATGGTTTCATCATCCATCGCATCTGGCGTCAGTTTGTGGTTGGA
CCGCGCTTCGAGACCGTGGACCTGCGTGGGAAAACGGCTATCGTAACAGG
CGCCAACACAGGAATCGGACGGGAGACATCGCGCTGTCTAGCAGAGATGG
GTGCACAGGTCATTTTGGCGTGTCGATCGCGGGCGCGGGCGGAGGAGGCC
ATTCGTGTGATTTTGAAGGAGGCAGGAACTAAAATTGACCCTTGTCAACT
AGAGTTCTGGACACTGGACGTGAGCAGCTTGCAGTCTGTGGGAGACTTTG
CGGCAATCTTCCAGGAGAGAAAAGGGGATGGCGGACTGGATATTTTGATT
AACAATGCAGGGGTGATGCTCAATGAGAAGATGGTAACGTCGGAAGGCTT
GGAAGCAACGATGGCGACTAACCATTATGGGCACTTCCTCCTGACTTTAC
TACTCTTCCCAGAGCTAGAAAAAGTTTCAGATGGACGCATCGTTAATGTC
TCCTCCAGCTTGCACAAGGCACCGACTTCCTTTAATTTTGACGATCCTCT
TTATGAGTCCAGCGCGTATAGCCTCTTTGGTGCTTATGGGCAGAGCAAGT
TAGCCAATGTTTTGTTCACTTTCGAATTACAACGACGCTTAGACGCACTA
CAACGGGATCGGGCCAAGATTATCGGAAGGCGAGGGGGAAGAGATGGAGG
AGGGAAGGTGATGACGGCCAACGCCGTACATCCAGGGAATGTCCAGACAG
AGGTAGCCCGGAATATGGCATGGCCCTTTTATTGGGGTCAGCGATTGTGC
AGTCCTTTGTTGTGGTGTTTCTCGAAAAATCCATTGCAGGGTGCTTATAC
CTCTGTGCATGCTGCGACTGCCCCGAGTTTGAGGGGGGTGGGTGGGTTGT
ATTTTGTGAACAGTGAGGCGACAGCTGACGTGTCTGCTGTGGCGAAGGAT
CCGCAGGTTGCCGAGAGACTATGGGAGATGAGTGAGGGTGTGTGTGGCTT
GGCCACTCCCGCAGCAGGTACAGAGCCAGTAGCCATGGCGGCGGCACCAG
CCATAGCAAAGAAAAGCTCGCCGACGAGAAGGAGAAGGGAAAGCGTGAGT
GCCGGTGCCAACACACCTGGTAAAAAGGCGATGACGCCGAAGAAAAGTGA
TGTTGCGAATGGTGGGGGGAATGGTGGGCGGAAGAGCAAGTCCCCGGCAA
GGAGACGGAGTGGAAAAGTGAATTGACAAAAAGTGGGAAATGTTGGTGGT
GCTGGTGTCGAGGGGTGGAAGAAAAGAAAGCAGCAGTGCTTGTGTGGAAA
AGAAAAAGAGGGTAAATAAATCAAG
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protein sequence of NO01G01460.1

>NO01G01460.1-protein ID=NO01G01460.1-protein|Name=NO01G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MLLSCSAAFSQLEALYLAGGLASLYAILVGLWRWGTYEARTPETYVPLAG
LAVAPLLPFLPLALFVEKGKTGAIFGVVTAVLLGWDGFIIHRIWRQFVVG
PRFETVDLRGKTAIVTGANTGIGRETSRCLAEMGAQVILACRSRARAEEA
IRVILKEAGTKIDPCQLEFWTLDVSSLQSVGDFAAIFQERKGDGGLDILI
NNAGVMLNEKMVTSEGLEATMATNHYGHFLLTLLLFPELEKVSDGRIVNV
SSSLHKAPTSFNFDDPLYESSAYSLFGAYGQSKLANVLFTFELQRRLDAL
QRDRAKIIGRRGGRDGGGKVMTANAVHPGNVQTEVARNMAWPFYWGQRLC
SPLLWCFSKNPLQGAYTSVHAATAPSLRGVGGLYFVNSEATADVSAVAKD
PQVAERLWEMSEGVCGLATPAAGTEPVAMAAAPAIAKKSSPTRRRRESVS
AGANTPGKKAMTPKKSDVANGGGNGGRKSKSPARRRSGKVN*
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mRNA from alignment at chr1:371595..373169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01460.1 ID=NO01G01460.1|Name=NO01G01460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp|location=Sequence derived from alignment at chr1:371595..373169+ (Nannochloropsis oceanica)
ATGTTGCTATCTTGCTCTGCCGCCTTCTCCCAGCTCGAAGCGCTTTACCT
GGCGGGAGGGCTCGCCTCTCTGTACGCTATCTTGGTAGGGCTTTGGCGCT
GGGGCACCTATGAGGCGAGGACTCCCGAAACCTACGTGCCTTTGGCCGGC
TTGGCTGTCGCGCCGCTCCTCCCGTTCCTGCCTCTGGCTTTGTTTGTAGA
GAAAGGAAAGACTGGAGCCATTTTTGGGGTAGTGACAGCGGTGCTCTTGG
GATGGGATGGTTTCATCATCCATCGCATCTGGCGTCAGTTTGTGGTTGGA
CCGCGCTTCGAGACCGTGGACCTGCGTGGGAAAACGGCTATCGTAACAGG
CGCCAACACAGGAATCGGACGGGAGACATCGCGCTGTCTAGCAGAGATGG
GTGCACAGGTCATTTTGGCGTGTCGATCGCGGGCGCGGGCGGAGGAGGCC
ATTCGTGTGATTTTGAAGGAGGCAGGAACTAAAATTGACCCTTGTCAACT
AGAGTTCTGGACACTGGACGTGAGCAGCTTGCAGTCTGTGGGAGACTTTG
CGGCAATCTTCCAGGAGAGAAAAGGGGATGGCGGACTGGATATTTTGATT
AACAATGCAGGGGTGATGCTCAATGAGAAGATGGTAACGTCGGAAGGCTT
GGAAGCAACGATGGCGACTAACCATTATGGGCACTTCCTCCTGACTTTAC
TACTCTTCCCAGAGCTAGAAAAAGTTTCAGATGGACGCATCGTTAATGTC
TCCTCCAGCTTGCACAAGGCACCGACTTCCTTTAATTTTGACGATCCTCT
TTATGAGTCCAGCGCGTATAGCCTCTTTGGTGCTTATGGGCAGAGCAAGT
TAGCCAATGTTTTGTTCACTTTCGAATTACAACGACGCTTAGACGCACTA
CAACGGGATCGGGCCAAGATTATCGGAAGGCGAGGGGGAAGAGATGGAGG
AGGGAAGGTGATGACGGCCAACGCCGTACATCCAGGGAATGTCCAGACAG
AGGTAGCCCGGAATATGGCATGGCCCTTTTATTGGGGTCAGCGATTGTGC
AGTCCTTTGTTGTGGTGTTTCTCGAAAAATCCATTGCAGGGTGCTTATAC
CTCTGTGCATGCTGCGACTGCCCCGAGTTTGAGGGGGGTGGGTGGGTTGT
ATTTTGTGAACAGTGAGGCGACAGCTGACGTGTCTGCTGTGGCGAAGGAT
CCGCAGGTTGCCGAGAGACTATGGGAGATGAGTGAGGGTGTGTGTGGCTT
GGCCACTCCCGCAGCAGGTACAGAGCCAGTAGCCATGGCGGCGGCACCAG
CCATAGCAAAGAAAAGCTCGCCGACGAGAAGGAGAAGGGAAAGCGTGAGT
GCCGGTGCCAACACACCTGGTAAAAAGGCGATGACGCCGAAGAAAAGTGA
TGTTGCGAATGGTGGGGGGAATGGTGGGCGGAAGAGCAAGTCCCCGGCAA
GGAGACGGAGTGGAAAAGTGAATTGACAAAAAGTGGGAAATGTTGGTGGT
GCTGGTGTCGAGGGGTGGAAGAAAAGAAAGCAGCAGTGCTTGTGTGGAAA
AGAAAAAGAGGGTAAATAAATCAAG
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Coding sequence (CDS) from alignment at chr1:371595..373169+

>NO01G01460.1 ID=NO01G01460.1|Name=NO01G01460.1|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at chr1:371595..373169+ (Nannochloropsis oceanica)
ATGTTGCTATCTTGCTCTGCCGCCTTCTCCCAGCTCGAAGCGCTTTACCT
GGCGGGAGGGCTCGCCTCTCTGTACGCTATCTTGGTAGGGCTTTGGCGCT
GGGGCACCTATGAGGCGAGGACTCCCGAAACCTACGTGCCTTTGGCCGGC
TTGGCTGTCGCGCCGCTCCTCCCGTTCCTGCCTCTGGCTTTGTTTGTAGA
GAAAGGAAAGACTGGAGCCATTTTTGGGGTAGTGACAGCGGTGCTCTTGG
GATGGGATGGTTTCATCATCCATCGCATCTGGCGTCAGTTTGTGGTTGGA
CCGCGCTTCGAGACCGTGGACCTGCGTGGGAAAACGGCTATCGTAACAGG
CGCCAACACAGGAATCGGACGGGAGACATCGCGCTGTCTAGCAGAGATGG
GTGCACAGGTCATTTTGGCGTGTCGATCGCGGGCGCGGGCGGAGGAGGCC
ATTCGTGTGATTTTGAAGGAGGCAGGAACTAAAATTGACCCTTGTCAACT
AGAGTTCTGGACACTGGACGTGAGCAGCTTGCAGTCTGTGGGAGACTTTG
CGGCAATCTTCCAGGAGAGAAAAGGGGATGGCGGACTGGATATTTTGATT
AACAATGCAGGGGTGATGCTCAATGAGAAGATGGTAACGTCGGAAGGCTT
GGAAGCAACGATGGCGACTAACCATTATGGGCACTTCCTCCTGACTTTAC
TACTCTTCCCAGAGCTAGAAAAAGTTTCAGATGGACGCATCGTTAATGTC
TCCTCCAGCTTGCACAAGGCACCGACTTCCTTTAATTTTGACGATCCTCT
TTATGAGTCCAGCGCGTATAGCCTCTTTGGTGCTTATGGGCAGAGCAAGT
TAGCCAATGTTTTGTTCACTTTCGAATTACAACGACGCTTAGACGCACTA
CAACGGGATCGGGCCAAGATTATCGGAAGGCGAGGGGGAAGAGATGGAGG
AGGGAAGGTGATGACGGCCAACGCCGTACATCCAGGGAATGTCCAGACAG
AGGTAGCCCGGAATATGGCATGGCCCTTTTATTGGGGTCAGCGATTGTGC
AGTCCTTTGTTGTGGTGTTTCTCGAAAAATCCATTGCAGGGTGCTTATAC
CTCTGTGCATGCTGCGACTGCCCCGAGTTTGAGGGGGGTGGGTGGGTTGT
ATTTTGTGAACAGTGAGGCGACAGCTGACGTGTCTGCTGTGGCGAAGGAT
CCGCAGGTTGCCGAGAGACTATGGGAGATGAGTGAGGGTGTGTGTGGCTT
GGCCACTCCCGCAGCAGGTACAGAGCCAGTAGCCATGGCGGCGGCACCAG
CCATAGCAAAGAAAAGCTCGCCGACGAGAAGGAGAAGGGAAAGCGTGAGT
GCCGGTGCCAACACACCTGGTAAAAAGGCGATGACGCCGAAGAAAAGTGA
TGTTGCGAATGGTGGGGGGAATGGTGGGCGGAAGAGCAAGTCCCCGGCAA
GGAGACGGAGTGGAAAAGTGAATTGA
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Synonyms
Publications