NO01G01450.1, NO01G01450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01450.1
Unique NameNO01G01450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1028
Alignment locationchr1:370233..371350 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:370233..371350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01450.1 vs.
Match: EWM29072.1 (hypothetical protein Naga_100024g28 [Nannochloropsis gaditana])

HSP 1 Score: 94.7 bits (234), Expect = 3.500e-16
Identity = 109/213 (51.17%), Postives = 137/213 (64.32%), Query Frame = 0 
Query:    1 MGKHVDDKPNDRRHSNGSGTSSKGRATKYDSGDGSGKHH---KTMKKRKRDEADSLSSSSPTSSPSSSSALSASDNESSSVSSSSNSLDERSRSKKKAKTEKEEKRKSKD-KKSKKESKKQSDKKEGKKRHKKEHKKSIKKKEKKRKRDRSKKRKHSSSSVHGCSSDSNSDNDVPRSAISGKKIKMKLKRDAADKQMEKGRKEFLRFMNSQYD 210
            MGKH  D  ++R HS       K R    D  D   + H   K  KKRKR+E   + + S +SS  SS     S +ESS  SSS +S   + +S KK K E+EEK K+K  KK++KE+KK+  KK+ KK+++KE KK    K KKRK++   KR+ SSS     SSDS SD+D PRSAISGKKIKMKLKRDAAD QME+GRK+FLRFMNSQ+D
Sbjct:    8 MGKH--DNRDNRHHSE-----EKRRHGNRDDDDIVRQDHEQRKKGKKRKREEEVEIEAGSLSSSSYSSD----SSSESSVTSSSLDSRYSKRKSSKKEKNEREEKGKTKKGKKARKETKKRKHKKDKKKKYEKEDKK----KNKKRKKE--SKRRKSSSHTAATSSDSESDDDAPRSAISGKKIKMKLKRDAADMQMERGRKDFLRFMNSQFD 203
The following BLAST results are available for this feature:
BLAST of NO01G01450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29072.13.500e-1651.17hypothetical protein Naga_100024g28 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01450NO01G01450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01450.1NO01G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01450.1.cds1NO01G01450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01450.1.cds2NO01G01450.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01450.1 ID=NO01G01450.1|Name=NO01G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1028bp
CTCCACCTTCTCATGCCTCTATTTCCTACATTGTCAAGACTTGAAGTGTT
CATAAAATGCTTCATGAAATGTCTTCCAACGTATCCGTACCTTGTGATCT
CACCCTTTCCTCGTTCCCCCATCACCCACACACACACTCACACACACACA
CACACACTCTCTCTCTCACACACGTAAACTCAGAGATACCATCGTCATCG
CCCACCCCTGCCTGATCTAGCCAAGCCGGGACATGGGCAAACATGTTGAC
GACAAGCCTAACGACCGACGTCACAGCAATGGCAGTGGCACCAGCAGCAA
GGGGCGAGCCACAAAATATGACAGTGGCGACGGAAGCGGCAAGCATCACA
AGACGATGAAGAAGCGGAAGCGCGATGAGGCAGACTCCCTTTCCTCTTCC
TCCCCCACCTCTTCCCCCTCCTCCTCCTCTGCCTTGTCAGCCTCAGACAA
CGAGAGCAGCAGTGTTTCCTCTTCCTCAAATTCACTAGACGAGCGAAGCA
GATCCAAGAAGAAGGCCAAGACCGAGAAGGAGGAAAAGAGAAAGTCCAAG
GACAAAAAGTCCAAGAAGGAGAGTAAGAAACAGAGCGATAAGAAAGAGGG
TAAGAAAAGGCATAAAAAGGAGCACAAGAAAAGCATTAAAAAAAAGGAGA
AGAAGCGGAAGAGGGATAGAAGCAAGAAAAGGAAGCACTCATCGTCCTCC
GTCCACGGCTGCAGCAGCGATTCGAACAGCGACAACGACGTGCCACGCTC
CGCTATTTCTGGCAAGAAGATTAAGATGAAATTGAAGCGTGACGCGGCGG
ACAAGCAGATGGAAAAGGGTCGCAAAGAGTTTTTGCGCTTCATGAATTCT
CAATATGACTAGGAAGGAGGAAGTTGTGGAAGGGATAAAAGAATGCGATA
AGCTTTCGGGAAGCTTTGGAATTGTAAAAAACATAGAAAAAGAAATACAT
GTTTTATGGGGAAATTGTCGTCTTGGCGGAGAGCTTTTAGCAGAATGGTA
TTACCAGCCCCTTGCTTCCCTCCATCAC
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protein sequence of NO01G01450.1

>NO01G01450.1-protein ID=NO01G01450.1-protein|Name=NO01G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MGKHVDDKPNDRRHSNGSGTSSKGRATKYDSGDGSGKHHKTMKKRKRDEA
DSLSSSSPTSSPSSSSALSASDNESSSVSSSSNSLDERSRSKKKAKTEKE
EKRKSKDKKSKKESKKQSDKKEGKKRHKKEHKKSIKKKEKKRKRDRSKKR
KHSSSSVHGCSSDSNSDNDVPRSAISGKKIKMKLKRDAADKQMEKGRKEF
LRFMNSQYD*
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mRNA from alignment at chr1:370233..371350+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01450.1 ID=NO01G01450.1|Name=NO01G01450.1|organism=Nannochloropsis oceanica|type=mRNA|length=1118bp|location=Sequence derived from alignment at chr1:370233..371350+ (Nannochloropsis oceanica)
CTCCACCTTCTCATGCCTCTATTTCCTACATTGTCAAGACTTGAAGTGTT
CATAAAATGCTTCATGAAATGTCTTCCAACGTATCCGTACCTTGTGATCT
CACCCTTTCCTCGTTCCCCCATCACCCACACACACACTCACACACACACA
CACACACTCTCTCTCTCACACACGTAAACTCAGAGATACCATCGTCATCG
CCCACCCCTGCCTGATCTAGCCAAGCCGGGACATGGGCAAACATGTTGAC
GACAAGCCTAACGACCGACGTCACAGCAATGGCAGTGGCACCAGCAGCAA
GGGGCGAGCCACAAAATATGACAGTGGCGACGGAAGCGGCAAGCATCACA
AGACGATGAAGAAGCGGAAGCGCGATGAGGCAGACTCCCTTTCCTCTTCC
TCCCCCACCTCTTCCCCCTCCTCCTCCTCTGCCTTGTCAGCCTCAGACAA
CGAGAGCAGCAGTGTTTCCTCTTCCTCAAATTCACTAGACGAGCGAAGCA
GATCCAAGAAGAAGGCCAAGACCGAGAAGGAGGAAAAGAGAAAGTCCAAG
GTACGGTTTCAGGGCGAGGATGGGCTCGGGAAATGCAGTAAGGACGGATA
TAAATGATGTCACCACACCCCATACTCCACACAACCAAAGGACAAAAAGT
CCAAGAAGGAGAGTAAGAAACAGAGCGATAAGAAAGAGGGTAAGAAAAGG
CATAAAAAGGAGCACAAGAAAAGCATTAAAAAAAAGGAGAAGAAGCGGAA
GAGGGATAGAAGCAAGAAAAGGAAGCACTCATCGTCCTCCGTCCACGGCT
GCAGCAGCGATTCGAACAGCGACAACGACGTGCCACGCTCCGCTATTTCT
GGCAAGAAGATTAAGATGAAATTGAAGCGTGACGCGGCGGACAAGCAGAT
GGAAAAGGGTCGCAAAGAGTTTTTGCGCTTCATGAATTCTCAATATGACT
AGGAAGGAGGAAGTTGTGGAAGGGATAAAAGAATGCGATAAGCTTTCGGG
AAGCTTTGGAATTGTAAAAAACATAGAAAAAGAAATACATGTTTTATGGG
GAAATTGTCGTCTTGGCGGAGAGCTTTTAGCAGAATGGTATTACCAGCCC
CTTGCTTCCCTCCATCAC
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Coding sequence (CDS) from alignment at chr1:370233..371350+

>NO01G01450.1 ID=NO01G01450.1|Name=NO01G01450.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr1:370233..371350+ (Nannochloropsis oceanica)
ATGGGCAAACATGTTGACGACAAGCCTAACGACCGACGTCACAGCAATGG
CAGTGGCACCAGCAGCAAGGGGCGAGCCACAAAATATGACAGTGGCGACG
GAAGCGGCAAGCATCACAAGACGATGAAGAAGCGGAAGCGCGATGAGGCA
GACTCCCTTTCCTCTTCCTCCCCCACCTCTTCCCCCTCCTCCTCCTCTGC
CTTGTCAGCCTCAGACAACGAGAGCAGCAGTGTTTCCTCTTCCTCAAATT
CACTAGACGAGCGAAGCAGATCCAAGAAGAAGGCCAAGACCGAGAAGGAG
GAAAAGAGAAAGTCCAAGGACAAAAAGTCCAAGAAGGAGAGTAAGAAACA
GAGCGATAAGAAAGAGGGTAAGAAAAGGCATAAAAAGGAGCACAAGAAAA
GCATTAAAAAAAAGGAGAAGAAGCGGAAGAGGGATAGAAGCAAGAAAAGG
AAGCACTCATCGTCCTCCGTCCACGGCTGCAGCAGCGATTCGAACAGCGA
CAACGACGTGCCACGCTCCGCTATTTCTGGCAAGAAGATTAAGATGAAAT
TGAAGCGTGACGCGGCGGACAAGCAGATGGAAAAGGGTCGCAAAGAGTTT
TTGCGCTTCATGAATTCTCAATATGACTAG
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Synonyms
Publications