NO01G01410.2, NO01G01410.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01410.2
Unique NameNO01G01410.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1314
Alignment locationchr1:358829..360522 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:358829..360522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01410.2 vs.
Match: EWM29065.1 (Synaptobrevin [Nannochloropsis gaditana])

HSP 1 Score: 306.6 bits (784), Expect = 8.100e-80
Identity = 157/219 (71.69%), Postives = 184/219 (84.02%), Query Frame = 0 
Query:    4 DATSPPTSPYSLLAGADKNLRLTAGAVARIDGVIVGTYRGRGTHAISEDFLQQVTRILALRCAQLSPNQRTFRFSETTCSEKVNFHVGMDKEARIYLVAVEKTYPTRVALLAVDEFAKEWKESKSSTRSLTCMEDGCRSAVRECVSALARRYEDVGANDQLTRVQAGVEGVREQMQVNITKALEGLQTTEEIMVRSEELRAGAMVFKKQTVTLKKMVWW 223
            D T  PT+ YSLL+  DKNLR+T GAVARIDGVIVGTY G GTHAI E+ LQ+VTRILALRCAQLSP QR   FSE TC++ VNFHVGMDKEAR+++VAVEK+ P R++LLAV+EFAKEW E +   RSL C+EDGCR AVRE V +LARR+ED+GA DQLTRVQAGVEGVRE MQVNI+KALEGLQ TE+I+VRSEEL++ A+VFKK   TLKK++WW
Sbjct:    3 DTTPLPTTNYSLLSN-DKNLRMTGGAVARIDGVIVGTYVGEGTHAILEELLQRVTRILALRCAQLSPKQRPLFFSEVTCNDIVNFHVGMDKEARVFVVAVEKSCPVRLSLLAVEEFAKEWGEGQHGNRSLVCVEDGCRFAVREHVMSLARRFEDMGAKDQLTRVQAGVEGVRELMQVNISKALEGLQATEDILVRSEELKSSALVFKKNATTLKKIMWW 220
The following BLAST results are available for this feature:
BLAST of NO01G01410.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29065.18.100e-8071.69Synaptobrevin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01410NO01G01410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01410.2NO01G01410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01410.2.cds1NO01G01410.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01410.2.cds2NO01G01410.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01410.2.cds3NO01G01410.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01410.2 ID=NO01G01410.2|Name=NO01G01410.2|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp
ACAGGAATCGCCTCCTGTCTATTCTTCTCGGGCTCGTGCCAGTATTTCCT
CACGCTCTATCAAATACACTCCTGTATTTTACGTTGACTCTCAATCTGGT
CTGGACAAGCACCACCGGCAACATGCCCGTCGACGCCACCTCTCCTCCTA
CGTCTCCCTATTCCTTACTGGCGGGGGCGGACAAAAATTTGCGGCTCACG
GCAGGCGCGGTGGCGCGTATCGACGGTGTCATCGTGGGCACTTACAGGGG
CCGAGGCACACACGCCATTAGTGAAGATTTCTTGCAGCAGGTGACACGGA
TCTTGGCATTGCGATGTGCCCAGCTCTCTCCCAATCAACGCACATTCCGG
TTCAGTGAGACAACCTGCAGCGAGAAGGTCAACTTTCACGTCGGTATGGA
TAAGGAAGCTCGTATTTACTTGGTGGCTGTGGAGAAGACCTACCCTACAC
GTGTCGCTTTGTTGGCAGTCGATGAATTCGCCAAGGAATGGAAGGAAAGC
AAAAGTAGCACCCGCTCTCTGACCTGCATGGAGGACGGGTGTCGTTCCGC
AGTGCGTGAGTGTGTCTCGGCTCTCGCGCGGCGATATGAAGACGTGGGAG
CAAACGATCAGCTGACAAGGGTCCAGGCGGGGGTGGAGGGAGTGAGGGAA
CAGATGCAGGTTAATATTACTAAAGCCTTGGAGGGACTGCAGACAACGGA
GGAGATCATGGTGCGATCTGAAGAGCTGAGGGCGGGTGCGATGGTGTTTA
AGAAGCAGACGGTGACGTTGAAGAAGATGGTTTGGTGGTACGTACTCTAC
TTTTCGCCCTTCCTCGCTCCTTCCTTGCGGTGGTCCTTATATGCTCTTGC
ACTCCTCCATTTCTACGTTCCTTCCTGTCCTCCATCCAGGCAAAAAGCCA
AGAACCAGTTTATCCTTGCGGGGCTCATCGTGGCGGTGGTGGTGCTGTTG
GGATCTTGGTTGGGGACCAAGTTCCGGAAGAAGTAGGAGAAAGAAGAAAG
AGGGGAGGAGGAGGGGAAGTGACAATTTCTGCGTGAAGATGAGTGAATCA
GTGCATGCGTGGTATGTATGCATCCATGCGCAAGAGAAATAATGTAACAT
TACATGACAAAATGTAACATTACATGACAAGCTCAGGCAAATTAACGAGC
AGAGGAGTAAGTCAATAAAGTACAACAGCAGTTCAATAGTATGAAGAAAG
AAAGAAAAAAAAGAAAAAAGGAAAGAAGAAAGAAAGAAAGAAAGCAAGCA
AGAAGGGAAGGAAGGGGGGAAGAAATGAAATGTTGTACAATAGCAGCAGG
AGCAGGATGAGCAG
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protein sequence of NO01G01410.2

>NO01G01410.2-protein ID=NO01G01410.2-protein|Name=NO01G01410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MPVDATSPPTSPYSLLAGADKNLRLTAGAVARIDGVIVGTYRGRGTHAIS
EDFLQQVTRILALRCAQLSPNQRTFRFSETTCSEKVNFHVGMDKEARIYL
VAVEKTYPTRVALLAVDEFAKEWKESKSSTRSLTCMEDGCRSAVRECVSA
LARRYEDVGANDQLTRVQAGVEGVREQMQVNITKALEGLQTTEEIMVRSE
ELRAGAMVFKKQTVTLKKMVWWYVLYFSPFLAPSLRWSLYALALLHFYVP
SCPPSRQKAKNQFILAGLIVAVVVLLGSWLGTKFRKK*
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mRNA from alignment at chr1:358829..360522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01410.2 ID=NO01G01410.2|Name=NO01G01410.2|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp|location=Sequence derived from alignment at chr1:358829..360522- (Nannochloropsis oceanica)
ACAGGAATCGCCTCCTGTCTATTCTTCTCGGGCTCGTGCCAGTATTTCCT
CACGCTCTATCAAATACACTCCTGTATTTTACGTTGACTCTCAATCTGGT
CTGGACAAGCACCACCGGCAACATGCCCGTCGACGCCACCTCTCCTCCTA
CGTCTCCCTATTCCTTACTGGCGGGGGCGGACAAAAATTTGCGGCTCACG
GTACGCATGTGTGTAGAGAAATGAAAGGAGTTTTCTGCTGCCGCTGGTCC
TCCTACCCTAACTTTGCTCTGCTTTTGCCACCCGACTAAGTGCAACGCCT
TTGTATGTATGGCTTCACGTGCAACAGAATATTGGCATCAATCTACTTTG
CACCTAGTCCCTCATTATCAACCCCTTCTCTCCCACTCCATCCGTCCCTT
CCTCCCTCTTCTCTCTTCTCCCCATTACAGGCAGGCGCGGTGGCGCGTAT
CGACGGTGTCATCGTGGGCACTTACAGGGGCCGAGGCACACACGCCATTA
GTGAAGATTTCTTGCAGCAGGTGACACGGATCTTGGCATTGGTACGTCCG
GAAGGAAGTTCATGTTCGTGCCTGTTATCTCTTCGTGAGGTCGTTTTCGT
CTCGGTAGACATGCTCTTTCAGTGTACGTCTGTCTATACCGCCTTCCATC
ACAATCTCTTTCCCCCTTTCATCACTATACCCCACTCCTAGCGATGTGCC
CAGCTCTCTCCCAATCAACGCACATTCCGGTTCAGTGAGACAACCTGCAG
CGAGAAGGTCAACTTTCACGTCGGTATGGATAAGGAAGCTCGTATTTACT
TGGTGGCTGTGGAGAAGACCTACCCTACACGTGTCGCTTTGTTGGCAGTC
GATGAATTCGCCAAGGAATGGAAGGAAAGCAAAAGTAGCACCCGCTCTCT
GACCTGCATGGAGGACGGGTGTCGTTCCGCAGTGCGTGAGTGTGTCTCGG
CTCTCGCGCGGCGATATGAAGACGTGGGAGCAAACGATCAGCTGACAAGG
GTCCAGGCGGGGGTGGAGGGAGTGAGGGAACAGATGCAGGTTAATATTAC
TAAAGCCTTGGAGGGACTGCAGACAACGGAGGAGATCATGGTGCGATCTG
AAGAGCTGAGGGCGGGTGCGATGGTGTTTAAGAAGCAGACGGTGACGTTG
AAGAAGATGGTTTGGTGGTACGTACTCTACTTTTCGCCCTTCCTCGCTCC
TTCCTTGCGGTGGTCCTTATATGCTCTTGCACTCCTCCATTTCTACGTTC
CTTCCTGTCCTCCATCCAGGCAAAAAGCCAAGAACCAGTTTATCCTTGCG
GGGCTCATCGTGGCGGTGGTGGTGCTGTTGGGATCTTGGTTGGGGACCAA
GTTCCGGAAGAAGTAGGAGAAAGAAGAAAGAGGGGAGGAGGAGGGGAAGT
GACAATTTCTGCGTGAAGATGAGTGAATCAGTGCATGCGTGGTATGTATG
CATCCATGCGCAAGAGAAATAATGTAACATTACATGACAAAATGTAACAT
TACATGACAAGCTCAGGCAAATTAACGAGCAGAGGAGTAAGTCAATAAAG
TACAACAGCAGTTCAATAGTATGAAGAAAGAAAGAAAAAAAAGAAAAAAG
GAAAGAAGAAAGAAAGAAAGAAAGCAAGCAAGAAGGGAAGGAAGGGGGGA
AGAAATGAAATGTTGTACAATAGCAGCAGGAGCAGGATGAGCAG
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Coding sequence (CDS) from alignment at chr1:358829..360522-

>NO01G01410.2 ID=NO01G01410.2|Name=NO01G01410.2|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr1:358829..360522- (Nannochloropsis oceanica)
ATGCCCGTCGACGCCACCTCTCCTCCTACGTCTCCCTATTCCTTACTGGC
GGGGGCGGACAAAAATTTGCGGCTCACGGCAGGCGCGGTGGCGCGTATCG
ACGGTGTCATCGTGGGCACTTACAGGGGCCGAGGCACACACGCCATTAGT
GAAGATTTCTTGCAGCAGGTGACACGGATCTTGGCATTGCGATGTGCCCA
GCTCTCTCCCAATCAACGCACATTCCGGTTCAGTGAGACAACCTGCAGCG
AGAAGGTCAACTTTCACGTCGGTATGGATAAGGAAGCTCGTATTTACTTG
GTGGCTGTGGAGAAGACCTACCCTACACGTGTCGCTTTGTTGGCAGTCGA
TGAATTCGCCAAGGAATGGAAGGAAAGCAAAAGTAGCACCCGCTCTCTGA
CCTGCATGGAGGACGGGTGTCGTTCCGCAGTGCGTGAGTGTGTCTCGGCT
CTCGCGCGGCGATATGAAGACGTGGGAGCAAACGATCAGCTGACAAGGGT
CCAGGCGGGGGTGGAGGGAGTGAGGGAACAGATGCAGGTTAATATTACTA
AAGCCTTGGAGGGACTGCAGACAACGGAGGAGATCATGGTGCGATCTGAA
GAGCTGAGGGCGGGTGCGATGGTGTTTAAGAAGCAGACGGTGACGTTGAA
GAAGATGGTTTGGTGGTACGTACTCTACTTTTCGCCCTTCCTCGCTCCTT
CCTTGCGGTGGTCCTTATATGCTCTTGCACTCCTCCATTTCTACGTTCCT
TCCTGTCCTCCATCCAGGCAAAAAGCCAAGAACCAGTTTATCCTTGCGGG
GCTCATCGTGGCGGTGGTGGTGCTGTTGGGATCTTGGTTGGGGACCAAGT
TCCGGAAGAAGTAG
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Synonyms
Publications