NO01G01390.1, NO01G01390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01390.1
Unique NameNO01G01390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1545
Alignment locationchr1:355752..357607 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:355752..357607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01390.1 vs.
Match: EWM29056.1 (Mitochondrial carrier protein [Nannochloropsis gaditana])

HSP 1 Score: 614.8 bits (1584), Expect = 1.600e-172
Identity = 292/322 (90.68%), Postives = 310/322 (96.27%), Query Frame = 0 
Query:    1 MAEDTSATPLDMSFLDAVPHTYRLLASGGIAGCVAKTMTAPLSRLTILFQVNSALHVGGRPQYASGLLPALRKVMREEGFWAFWKGNGTSVLHRFPYAGINFYCYEKFKEALGDGSPRNETPFTRLVAGACAGGVACSACYPLDLIRTRLTIQDEGPHKEYRSITHAFRKIAAVEGMGGLYRGLGTTLMVAVPNLAISYCIYGTMKEFIFHYKYPTRDVMEATLEEPHFVESLVCGATSGICSSLMTYPMDVIRRRLQILGVHPGCHRPGESVGPWNELRTIVRNEGATGLYRGLVPELLKVTPMVGCTFTTYELMKDVLGV 323
            MAEDTS+TPLDMSFLDAVPHTYRLLASGGIAGCVAKTMTAPLSRLTILFQVNSALHVGGRPQYA+GLLPALRKVMREEGF AFWKGNGTSVLHRFPYAGINFY YEKFKE LGDGSPRNETPFTRL+AGACAGGVACSACYPLDLIRTRLTIQDEGP +EYRSI HAFRKIAA EG+GGLYRGLGTTLMVAVPNLAISYCIYGTMKE I+HYKYP+RDV EA+ EEPHF+ESLVCGATSGICSSL+TYPMDV+RRRLQILG+HPG HRPGE+VGPWNEL+TI+++EG  GLYRGL+PELLKVTPMVGCTFTTYELMKDVLGV
Sbjct:    1 MAEDTSSTPLDMSFLDAVPHTYRLLASGGIAGCVAKTMTAPLSRLTILFQVNSALHVGGRPQYANGLLPALRKVMREEGFLAFWKGNGTSVLHRFPYAGINFYSYEKFKEYLGDGSPRNETPFTRLIAGACAGGVACSACYPLDLIRTRLTIQDEGPGREYRSIGHAFRKIAASEGLGGLYRGLGTTLMVAVPNLAISYCIYGTMKEVIYHYKYPSRDVTEASEEEPHFLESLVCGATSGICSSLITYPMDVLRRRLQILGLHPGNHRPGETVGPWNELKTILKHEGPRGLYRGLLPELLKVTPMVGCTFTTYELMKDVLGV 322
The following BLAST results are available for this feature:
BLAST of NO01G01390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29056.11.600e-17290.68Mitochondrial carrier protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01390NO01G01390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01390.1NO01G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01390.1.cds1NO01G01390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01390.1.cds2NO01G01390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01390.1 ID=NO01G01390.1|Name=NO01G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp
ATAGCGCGTTTGCGGGCCAAATCAAGAACAGGTCAATTGCGGATAAGGAG
CTGTCGATACGCACCGCCTGTCTTTTTGAGCCGGAGGCGTCCGTGCTTGG
CTACTTCAGTGGGGAAAGACTTGATAACGAGAGGGACTTGCTGCATATTC
GTGGTGCGTGGGTGCGTCCTCGTACTTACTTTGTGTCTGGCGGCGGTGCC
CCGCCCTGCCTGACCGCCTCCGCCGCCGCCGCACTCCTCCTTCTCCTCTT
CCTCCTCTTTCTCCTCTTCCTCCTCCTCCTACCAGCTTTCCTCCTCCTAC
TCTAGCCATTATTCCACATTATCAGCACCATGGCAGAAGACACGTCAGCC
ACCCCTCTAGACATGTCCTTCCTCGATGCCGTCCCTCACACTTACCGCCT
CCTCGCTTCTGGGGGCATTGCGGGTTGCGTGGCCAAAACCATGACAGCGC
CCCTAAGTCGCCTCACAATTTTATTCCAAGTTAATAGTGCCTTGCACGTG
GGGGGCCGGCCGCAGTACGCCAGTGGACTGTTGCCGGCTTTGAGGAAGGT
GATGCGTGAGGAGGGGTTTTGGGCCTTCTGGAAGGGCAACGGCACGAGTG
TCCTACATCGCTTTCCCTACGCAGGCATAAATTTCTATTGTTACGAAAAG
TTCAAAGAAGCGTTGGGGGATGGCTCGCCGCGAAACGAGACCCCCTTCAC
GCGCCTCGTCGCTGGGGCCTGCGCGGGAGGAGTGGCGTGCTCTGCGTGTT
ACCCGCTTGACTTGATCCGGACAAGACTGACCATTCAAGACGAGGGTCCT
CACAAGGAGTACCGTTCGATTACACACGCCTTTCGAAAGATAGCGGCGGT
GGAAGGGATGGGGGGGTTGTATCGGGGGCTTGGGACGACTTTGATGGTGG
CGGTACCGAATTTAGCGATTAGTTATTGTATTTATGGGACGATGAAGGAG
TTTATATTTCACTACAAATACCCCACGAGGGATGTCATGGAGGCGACGTT
GGAAGAGCCACATTTTGTGGAGAGCCTGGTGTGCGGGGCCACGAGTGGTA
TTTGCTCCAGCTTGATGACCTATCCGATGGACGTGATTCGGAGGCGGTTA
CAGATTTTGGGTGTGCATCCAGGGTGCCATCGGCCGGGGGAGTCGGTGGG
GCCTTGGAATGAGTTGAGGACCATAGTGAGGAATGAGGGGGCGACTGGTT
TGTACCGGGGGCTGGTGCCGGAATTGTTGAAAGTGACTCCCATGGTGGGG
TGCACTTTCACGACGTACGAGCTTATGAAAGATGTGTTGGGTGTGTAGAA
GGGAGATGGACTTTGGGTTTTATGCATCCTGTGTGCGTGGAATGGTGGGG
GCGAATCCCGAGAGATGGACGCGGAGAATTAAGTAGTTGGAAGCTGCAGT
AAGAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGG
TGAGATGGGCGGCAGCAAACACCAAATGATGACAATCGAGTACACCAAAT
ACGGAAGTGAAAGAATCATTGAAACTGAGTATACACTGTCTCGTA
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protein sequence of NO01G01390.1

>NO01G01390.1-protein ID=NO01G01390.1-protein|Name=NO01G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MAEDTSATPLDMSFLDAVPHTYRLLASGGIAGCVAKTMTAPLSRLTILFQ
VNSALHVGGRPQYASGLLPALRKVMREEGFWAFWKGNGTSVLHRFPYAGI
NFYCYEKFKEALGDGSPRNETPFTRLVAGACAGGVACSACYPLDLIRTRL
TIQDEGPHKEYRSITHAFRKIAAVEGMGGLYRGLGTTLMVAVPNLAISYC
IYGTMKEFIFHYKYPTRDVMEATLEEPHFVESLVCGATSGICSSLMTYPM
DVIRRRLQILGVHPGCHRPGESVGPWNELRTIVRNEGATGLYRGLVPELL
KVTPMVGCTFTTYELMKDVLGV*
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mRNA from alignment at chr1:355752..357607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01390.1 ID=NO01G01390.1|Name=NO01G01390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp|location=Sequence derived from alignment at chr1:355752..357607+ (Nannochloropsis oceanica)
ATAGCGCGTTTGCGGGCCAAATCAAGAACAGGTCAATTGCGGATAAGGAG
CTGTCGATACGCACCGCCTGTCTTTTTGAGCCGGAGGCGTCCGTGCTTGG
CTACTTCAGGTACGGTATACAAATGTGCATGCTGATTCTGAAATGAATGC
CGCTATTGCTGCCCTCCACCAAGCGCAAAGAGAGCTCATATGATATACAC
ATCTCTAACACGGCAATTTATAGTGGGGAAAGACTTGATAACGAGAGGGA
CTTGCTGCATATTCGTGGTGCGTGGGTGCGTCCTCGTACTTACTTTGTGT
CTGGCGGCGGTGCCCCGCCCTGCCTGACCGCCTCCGCCGCCGCCGCACTC
CTCCTTCTCCTCTTCCTCCTCTTTCTCCTCTTCCTCCTCCTCCTACCAGC
TTTCCTCCTCCTACTCTAGCCATTATTCCACATTATCAGCACCATGGCAG
AAGACACGTCAGCCACCCCTCTAGACATGTCCTTCCTCGATGCCGTCCCT
CACACTTACCGCCTCCTCGCTTCTGGGGGCATTGCGGGTTGCGTGGCCAA
AACCATGACAGCGCCCCTAAGTCGCCTCACAATTTTATTCCAAGTTAATA
GTGCCTTGCACGTGGGGGGCCGGCCGCAGTACGCCAGTGGACTGTTGCCG
GCTTTGAGGAAGGTGATGCGTGAGGAGGGGTTTTGGGCCTTCTGGAAGGT
GAGTAGAGGGAGGGAGAGAGGGAGGGAGGATTCAATAGGTTGGCTATATA
TGGTCGCTGACGTTGGGGTGGTGGTCAACAAGTAAAGGCTGCTACCAAAA
GAGCTTAAAGGAGGAAGCCTTTGGCTCACTCACACAGTCACCCATCTCCC
TCCCTCCCCAACTCCTCCTGTCTTCCTCTACCCCTCCTCCCTTAGGGCAA
CGGCACGAGTGTCCTACATCGCTTTCCCTACGCAGGCATAAATTTCTATT
GTTACGAAAAGTTCAAAGAAGCGTTGGGGGATGGCTCGCCGCGAAACGAG
ACCCCCTTCACGCGCCTCGTCGCTGGGGCCTGCGCGGGAGGAGTGGCGTG
CTCTGCGTGTTACCCGCTTGACTTGATCCGGACAAGACTGACCATTCAAG
ACGAGGGTCCTCACAAGGAGTACCGTTCGATTACACACGCCTTTCGAAAG
ATAGCGGCGGTGGAAGGGATGGGGGGGTTGTATCGGGGGCTTGGGACGAC
TTTGATGGTGGCGGTACCGAATTTAGCGATTAGTTATTGTATTTATGGGA
CGATGAAGGAGTTTATATTTCACTACAAATACCCCACGAGGGATGTCATG
GAGGCGACGTTGGAAGAGCCACATTTTGTGGAGAGCCTGGTGTGCGGGGC
CACGAGTGGTATTTGCTCCAGCTTGATGACCTATCCGATGGACGTGATTC
GGAGGCGGTTACAGATTTTGGGTGTGCATCCAGGGTGCCATCGGCCGGGG
GAGTCGGTGGGGCCTTGGAATGAGTTGAGGACCATAGTGAGGAATGAGGG
GGCGACTGGTTTGTACCGGGGGCTGGTGCCGGAATTGTTGAAAGTGACTC
CCATGGTGGGGTGCACTTTCACGACGTACGAGCTTATGAAAGATGTGTTG
GGTGTGTAGAAGGGAGATGGACTTTGGGTTTTATGCATCCTGTGTGCGTG
GAATGGTGGGGGCGAATCCCGAGAGATGGACGCGGAGAATTAAGTAGTTG
GAAGCTGCAGTAAGAGTAGCAGTAGTAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGTGAGATGGGCGGCAGCAAACACCAAATGATGACAATCGA
GTACACCAAATACGGAAGTGAAAGAATCATTGAAACTGAGTATACACTGT
CTCGTA
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Coding sequence (CDS) from alignment at chr1:355752..357607+

>NO01G01390.1 ID=NO01G01390.1|Name=NO01G01390.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr1:355752..357607+ (Nannochloropsis oceanica)
ATGGCAGAAGACACGTCAGCCACCCCTCTAGACATGTCCTTCCTCGATGC
CGTCCCTCACACTTACCGCCTCCTCGCTTCTGGGGGCATTGCGGGTTGCG
TGGCCAAAACCATGACAGCGCCCCTAAGTCGCCTCACAATTTTATTCCAA
GTTAATAGTGCCTTGCACGTGGGGGGCCGGCCGCAGTACGCCAGTGGACT
GTTGCCGGCTTTGAGGAAGGTGATGCGTGAGGAGGGGTTTTGGGCCTTCT
GGAAGGGCAACGGCACGAGTGTCCTACATCGCTTTCCCTACGCAGGCATA
AATTTCTATTGTTACGAAAAGTTCAAAGAAGCGTTGGGGGATGGCTCGCC
GCGAAACGAGACCCCCTTCACGCGCCTCGTCGCTGGGGCCTGCGCGGGAG
GAGTGGCGTGCTCTGCGTGTTACCCGCTTGACTTGATCCGGACAAGACTG
ACCATTCAAGACGAGGGTCCTCACAAGGAGTACCGTTCGATTACACACGC
CTTTCGAAAGATAGCGGCGGTGGAAGGGATGGGGGGGTTGTATCGGGGGC
TTGGGACGACTTTGATGGTGGCGGTACCGAATTTAGCGATTAGTTATTGT
ATTTATGGGACGATGAAGGAGTTTATATTTCACTACAAATACCCCACGAG
GGATGTCATGGAGGCGACGTTGGAAGAGCCACATTTTGTGGAGAGCCTGG
TGTGCGGGGCCACGAGTGGTATTTGCTCCAGCTTGATGACCTATCCGATG
GACGTGATTCGGAGGCGGTTACAGATTTTGGGTGTGCATCCAGGGTGCCA
TCGGCCGGGGGAGTCGGTGGGGCCTTGGAATGAGTTGAGGACCATAGTGA
GGAATGAGGGGGCGACTGGTTTGTACCGGGGGCTGGTGCCGGAATTGTTG
AAAGTGACTCCCATGGTGGGGTGCACTTTCACGACGTACGAGCTTATGAA
AGATGTGTTGGGTGTGTAG
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Synonyms
Publications