NO01G01370.1, NO01G01370.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01370.1
Unique NameNO01G01370.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1985
Alignment locationchr1:352785..354769 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:352785..354769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01370.1 vs.
Match: XP_005110410.1 (PREDICTED: zinc finger MYND domain-containing protein 10-like [Aplysia californica])

HSP 1 Score: 300.4 bits (768), Expect = 1.300e-77
Identity = 193/529 (36.48%), Postives = 288/529 (54.44%), Query Frame = 0 
Query:   91 LLSVGEAEALVEGLCVFNLQDVGSSVWLEQHQALERLNAQAHQSARCPDASQDEFVLEAFVSRDKVTTLVQELILMDCWREKVWPRVMLEVINRGATMRAYFVLFHEATVVNLLEVLFYHLKACEAAGDALIDLVDYCAGKIVLLNGGMFSGNSISGAKAAAEQTGISENDIRARVAAMAVRDPEESFKEQARKIDFQVAVTAVGILRLLCGHLEDLPLGVGTRLLHTHDIPLSLIPLLESPPWTRKQSNSSNSSNSSNSKRITSWEKLGPDFNWHVVAPAELLLLTKHEAQAWLMLFHLITSPQTRQQYHLNRYRKDQLLRLRKYMTEPLLDQIPVLADVRRYLDELALMEVPEPTAGGGGRGAGGGGAPGLLLVEQVAQLRAGILAGVALKRGVGRRCKEGEDKMWEGLALMVLKENFGTEGGDARDQDLRRLASLYSCEWVDEVVASATAGAIHGGSNDGQVTVAEEKEEGGGEGRHEGRLCSNCGKEASKRCGRCNIASEWYCGRQCQVAKWKSHKPACDTVVSA 620
            LLSV EAEA VE L VF+L+D+G+  W +QH+ LE+LN QA  +A    A +DEFV E F+S  K+  LVQ+L+L + W++ V+P ++        T   Y VL+HEATVVNLLE + ++ + CE A D+++DLVDYC  K+  L        +  G     E   + + +I      M      +  +EQ +K+ F++++ A+ +LR +  H + LPL V TR+L+THDIP+ L+ L+ESPPWTR++             +I  +     D  W  V+  + L LTK E Q WL LFHL+   Q +++Y LN YRK+ +++LR Y+TE LLDQ+PVL +++R L+ LA+M+ P               A   L++EQV ++R  +     LK+  G+         WE +A +  K+NF       R+Q  +R AS Y+ + ++E+V+                               E   C+ CG+ ASKRC RC   +EWYC R+CQV  WK HK ACD + +A
Sbjct:   11 LLSV-EAEAYVEHLEVFDLKDIGTPRWHQQHENLEKLNMQAVVNAA---AKEDEFVKEFFISYGKIDMLVQDLLLTEIWKQNVFPELVDMEFQPKTTFPIYMVLYHEATVVNLLETMMFYKETCEVAEDSILDLVDYCYRKLCYL--------AAKGNDEDDEFLPMGQREITQSTNNM------DELEEQDKKLQFEISIKALTLLRYVTDHFDCLPLSVMTRVLNTHDIPILLVQLVESPPWTRRKDG-----------KIYKF----IDGKWQEVSFEDSLKLTKTEGQVWLALFHLLMEQQCQEKYDLNNYRKNTIIKLRSYLTEVLLDQMPVLGELQRNLEHLAIMDPPP--------------AKKDLVLEQVPEIREKL-----LKKYNGK---------WEKIAKVQSKKNFNQSDAAIREQ-AQRWASTYNFDVLEELVS-------------------------------EPPKCAVCGQPASKRCSRCQ--NEWYCRRECQVGHWKKHKQACDLLFNA 444
The following BLAST results are available for this feature:
BLAST of NO01G01370.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005110410.11.300e-7736.48PREDICTED: zinc finger MYND domain-containing prot... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01370NO01G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01370.1NO01G01370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01370.1.cds1NO01G01370.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01370.1 ID=NO01G01370.1|Name=NO01G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp
CTTATTTTCGCCGTCAAAAAATTATCCTTTCACAGCCAAAAACACGCCAG
ACAAACACCGCAACAATTGAACAACCATATCAACTGCAGCATGGTGATGA
TTGAAGAGGATTCCGCGCCATTCCCAGCAGCTATTATGTGCTCAACTCCC
TCCTTCTTCTCCTCCTCCCGTGTGCCCAACTCAAAGCCCAAGCATGAATG
GAGCCAAACGTCAACCACCACTAGCAGCACCAGCAAGACCACGACCACCA
GTCCCAGCAGGAGTGGTATCACCAACAGCAGCACCTGCACCACCAATACC
ACCACCGCCACCACCCGTTTGCCCATCCAAGACCACGACACACCCGCGGC
CTTCTCGCCGCTTTTGAGCGTGGGCGAGGCTGAGGCCTTAGTGGAGGGGC
TGTGTGTCTTTAATTTGCAAGACGTGGGCTCATCTGTGTGGCTTGAGCAG
CACCAGGCCCTGGAACGGTTGAATGCCCAAGCGCATCAATCGGCCCGTTG
CCCGGACGCGAGCCAGGATGAATTCGTGCTTGAGGCATTTGTGTCCCGGG
ATAAGGTGACGACACTGGTGCAGGAACTGATTTTGATGGATTGCTGGAGG
GAGAAGGTCTGGCCAAGGGTGATGCTCGAGGTGATAAATCGTGGGGCAAC
CATGAGAGCGTATTTTGTTCTTTTTCATGAGGCAACTGTGGTGAATTTAT
TGGAGGTATTGTTTTATCATTTGAAGGCATGTGAAGCGGCGGGGGATGCT
TTAATTGACCTTGTGGATTACTGTGCCGGGAAAATAGTCTTACTTAATGG
TGGGATGTTTAGTGGCAACAGTATCAGCGGCGCAAAAGCAGCAGCGGAAC
AAACGGGCATCAGCGAAAACGATATCAGGGCGCGTGTTGCAGCAATGGCC
GTGCGCGACCCCGAGGAGAGCTTCAAGGAGCAAGCACGAAAGATAGATTT
TCAAGTGGCCGTCACGGCTGTAGGCATCCTCCGTCTTCTTTGCGGTCATC
TAGAAGACCTCCCCCTCGGTGTTGGGACGCGCCTCCTTCACACTCATGAC
ATACCTCTGTCTCTTATCCCGCTTCTTGAGAGCCCACCCTGGACCCGCAA
ACAAAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAAGCGCATCA
CCTCCTGGGAGAAACTCGGTCCTGACTTCAACTGGCACGTTGTAGCACCC
GCAGAACTCCTTTTGCTGACCAAACACGAGGCCCAGGCATGGCTCATGCT
TTTCCACCTCATCACCAGCCCTCAGACGCGACAACAGTACCATCTCAATC
GCTACCGAAAAGACCAATTGCTTCGTCTGAGGAAGTATATGACAGAACCA
CTCCTAGATCAGATCCCTGTCCTCGCCGATGTCCGGAGGTATCTGGATGA
GCTGGCCTTGATGGAGGTACCTGAACCTACAGCTGGTGGGGGAGGAAGGG
GGGCAGGAGGGGGAGGGGCTCCGGGTTTGTTGTTGGTCGAGCAGGTGGCA
CAGCTCCGAGCAGGAATTTTGGCCGGGGTAGCGTTGAAAAGGGGAGTTGG
GCGAAGGTGCAAGGAGGGTGAGGACAAGATGTGGGAGGGTTTGGCGCTAA
TGGTGTTAAAGGAGAATTTTGGGACTGAGGGAGGGGACGCCCGGGATCAG
GATCTAAGGCGGTTGGCGTCTCTGTATAGTTGTGAGTGGGTAGATGAGGT
GGTAGCCTCTGCTACTGCTGGTGCTATTCATGGTGGGAGTAATGATGGTC
AGGTGACAGTTGCAGAAGAAAAAGAGGAAGGGGGAGGGGAAGGACGGCAC
GAAGGGAGGCTGTGTAGTAACTGTGGGAAGGAGGCGAGCAAGCGGTGTGG
ACGTTGCAATATTGCGTCAGAATGGTACTGTGGTCGGCAGTGCCAGGTGG
CAAAGTGGAAGAGTCATAAACCCGCGTGTGATACCGTGGTGTCGGCGCGG
GCAGTATGAGCATGTGCAGGGGAGAGAGCTTCGAG
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protein sequence of NO01G01370.1

>NO01G01370.1-protein ID=NO01G01370.1-protein|Name=NO01G01370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MVMIEEDSAPFPAAIMCSTPSFFSSSRVPNSKPKHEWSQTSTTTSSTSKT
TTTSPSRSGITNSSTCTTNTTTATTRLPIQDHDTPAAFSPLLSVGEAEAL
VEGLCVFNLQDVGSSVWLEQHQALERLNAQAHQSARCPDASQDEFVLEAF
VSRDKVTTLVQELILMDCWREKVWPRVMLEVINRGATMRAYFVLFHEATV
VNLLEVLFYHLKACEAAGDALIDLVDYCAGKIVLLNGGMFSGNSISGAKA
AAEQTGISENDIRARVAAMAVRDPEESFKEQARKIDFQVAVTAVGILRLL
CGHLEDLPLGVGTRLLHTHDIPLSLIPLLESPPWTRKQSNSSNSSNSSNS
KRITSWEKLGPDFNWHVVAPAELLLLTKHEAQAWLMLFHLITSPQTRQQY
HLNRYRKDQLLRLRKYMTEPLLDQIPVLADVRRYLDELALMEVPEPTAGG
GGRGAGGGGAPGLLLVEQVAQLRAGILAGVALKRGVGRRCKEGEDKMWEG
LALMVLKENFGTEGGDARDQDLRRLASLYSCEWVDEVVASATAGAIHGGS
NDGQVTVAEEKEEGGGEGRHEGRLCSNCGKEASKRCGRCNIASEWYCGRQ
CQVAKWKSHKPACDTVVSARAV*
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mRNA from alignment at chr1:352785..354769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01370.1 ID=NO01G01370.1|Name=NO01G01370.1|organism=Nannochloropsis oceanica|type=mRNA|length=1985bp|location=Sequence derived from alignment at chr1:352785..354769+ (Nannochloropsis oceanica)
CTTATTTTCGCCGTCAAAAAATTATCCTTTCACAGCCAAAAACACGCCAG
ACAAACACCGCAACAATTGAACAACCATATCAACTGCAGCATGGTGATGA
TTGAAGAGGATTCCGCGCCATTCCCAGCAGCTATTATGTGCTCAACTCCC
TCCTTCTTCTCCTCCTCCCGTGTGCCCAACTCAAAGCCCAAGCATGAATG
GAGCCAAACGTCAACCACCACTAGCAGCACCAGCAAGACCACGACCACCA
GTCCCAGCAGGAGTGGTATCACCAACAGCAGCACCTGCACCACCAATACC
ACCACCGCCACCACCCGTTTGCCCATCCAAGACCACGACACACCCGCGGC
CTTCTCGCCGCTTTTGAGCGTGGGCGAGGCTGAGGCCTTAGTGGAGGGGC
TGTGTGTCTTTAATTTGCAAGACGTGGGCTCATCTGTGTGGCTTGAGCAG
CACCAGGCCCTGGAACGGTTGAATGCCCAAGCGCATCAATCGGCCCGTTG
CCCGGACGCGAGCCAGGATGAATTCGTGCTTGAGGCATTTGTGTCCCGGG
ATAAGGTGACGACACTGGTGCAGGAACTGATTTTGATGGATTGCTGGAGG
GAGAAGGTCTGGCCAAGGGTGATGCTCGAGGTGATAAATCGTGGGGCAAC
CATGAGAGCGTATTTTGTTCTTTTTCATGAGGCAACTGTGGTGAATTTAT
TGGAGGTATTGTTTTATCATTTGAAGGCATGTGAAGCGGCGGGGGATGCT
TTAATTGACCTTGTGGATTACTGTGCCGGGAAAATAGTCTTACTTAATGG
TGGGATGTTTAGTGGCAACAGTATCAGCGGCGCAAAAGCAGCAGCGGAAC
AAACGGGCATCAGCGAAAACGATATCAGGGCGCGTGTTGCAGCAATGGCC
GTGCGCGACCCCGAGGAGAGCTTCAAGGAGCAAGCACGAAAGATAGATTT
TCAAGTGGCCGTCACGGCTGTAGGCATCCTCCGTCTTCTTTGCGGTCATC
TAGAAGACCTCCCCCTCGGTGTTGGGACGCGCCTCCTTCACACTCATGAC
ATACCTCTGTCTCTTATCCCGCTTCTTGAGAGCCCACCCTGGACCCGCAA
ACAAAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAAGCGCATCA
CCTCCTGGGAGAAACTCGGTCCTGACTTCAACTGGCACGTTGTAGCACCC
GCAGAACTCCTTTTGCTGACCAAACACGAGGCCCAGGCATGGCTCATGCT
TTTCCACCTCATCACCAGCCCTCAGACGCGACAACAGTACCATCTCAATC
GCTACCGAAAAGACCAATTGCTTCGTCTGAGGAAGTATATGACAGAACCA
CTCCTAGATCAGATCCCTGTCCTCGCCGATGTCCGGAGGTATCTGGATGA
GCTGGCCTTGATGGAGGTACCTGAACCTACAGCTGGTGGGGGAGGAAGGG
GGGCAGGAGGGGGAGGGGCTCCGGGTTTGTTGTTGGTCGAGCAGGTGGCA
CAGCTCCGAGCAGGAATTTTGGCCGGGGTAGCGTTGAAAAGGGGAGTTGG
GCGAAGGTGCAAGGAGGGTGAGGACAAGATGTGGGAGGGTTTGGCGCTAA
TGGTGTTAAAGGAGAATTTTGGGACTGAGGGAGGGGACGCCCGGGATCAG
GATCTAAGGCGGTTGGCGTCTCTGTATAGTTGTGAGTGGGTAGATGAGGT
GGTAGCCTCTGCTACTGCTGGTGCTATTCATGGTGGGAGTAATGATGGTC
AGGTGACAGTTGCAGAAGAAAAAGAGGAAGGGGGAGGGGAAGGACGGCAC
GAAGGGAGGCTGTGTAGTAACTGTGGGAAGGAGGCGAGCAAGCGGTGTGG
ACGTTGCAATATTGCGTCAGAATGGTACTGTGGTCGGCAGTGCCAGGTGG
CAAAGTGGAAGAGTCATAAACCCGCGTGTGATACCGTGGTGTCGGCGCGG
GCAGTATGAGCATGTGCAGGGGAGAGAGCTTCGAG
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Coding sequence (CDS) from alignment at chr1:352785..354769+

>NO01G01370.1 ID=NO01G01370.1|Name=NO01G01370.1|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at chr1:352785..354769+ (Nannochloropsis oceanica)
ATGGTGATGATTGAAGAGGATTCCGCGCCATTCCCAGCAGCTATTATGTG
CTCAACTCCCTCCTTCTTCTCCTCCTCCCGTGTGCCCAACTCAAAGCCCA
AGCATGAATGGAGCCAAACGTCAACCACCACTAGCAGCACCAGCAAGACC
ACGACCACCAGTCCCAGCAGGAGTGGTATCACCAACAGCAGCACCTGCAC
CACCAATACCACCACCGCCACCACCCGTTTGCCCATCCAAGACCACGACA
CACCCGCGGCCTTCTCGCCGCTTTTGAGCGTGGGCGAGGCTGAGGCCTTA
GTGGAGGGGCTGTGTGTCTTTAATTTGCAAGACGTGGGCTCATCTGTGTG
GCTTGAGCAGCACCAGGCCCTGGAACGGTTGAATGCCCAAGCGCATCAAT
CGGCCCGTTGCCCGGACGCGAGCCAGGATGAATTCGTGCTTGAGGCATTT
GTGTCCCGGGATAAGGTGACGACACTGGTGCAGGAACTGATTTTGATGGA
TTGCTGGAGGGAGAAGGTCTGGCCAAGGGTGATGCTCGAGGTGATAAATC
GTGGGGCAACCATGAGAGCGTATTTTGTTCTTTTTCATGAGGCAACTGTG
GTGAATTTATTGGAGGTATTGTTTTATCATTTGAAGGCATGTGAAGCGGC
GGGGGATGCTTTAATTGACCTTGTGGATTACTGTGCCGGGAAAATAGTCT
TACTTAATGGTGGGATGTTTAGTGGCAACAGTATCAGCGGCGCAAAAGCA
GCAGCGGAACAAACGGGCATCAGCGAAAACGATATCAGGGCGCGTGTTGC
AGCAATGGCCGTGCGCGACCCCGAGGAGAGCTTCAAGGAGCAAGCACGAA
AGATAGATTTTCAAGTGGCCGTCACGGCTGTAGGCATCCTCCGTCTTCTT
TGCGGTCATCTAGAAGACCTCCCCCTCGGTGTTGGGACGCGCCTCCTTCA
CACTCATGACATACCTCTGTCTCTTATCCCGCTTCTTGAGAGCCCACCCT
GGACCCGCAAACAAAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGC
AAGCGCATCACCTCCTGGGAGAAACTCGGTCCTGACTTCAACTGGCACGT
TGTAGCACCCGCAGAACTCCTTTTGCTGACCAAACACGAGGCCCAGGCAT
GGCTCATGCTTTTCCACCTCATCACCAGCCCTCAGACGCGACAACAGTAC
CATCTCAATCGCTACCGAAAAGACCAATTGCTTCGTCTGAGGAAGTATAT
GACAGAACCACTCCTAGATCAGATCCCTGTCCTCGCCGATGTCCGGAGGT
ATCTGGATGAGCTGGCCTTGATGGAGGTACCTGAACCTACAGCTGGTGGG
GGAGGAAGGGGGGCAGGAGGGGGAGGGGCTCCGGGTTTGTTGTTGGTCGA
GCAGGTGGCACAGCTCCGAGCAGGAATTTTGGCCGGGGTAGCGTTGAAAA
GGGGAGTTGGGCGAAGGTGCAAGGAGGGTGAGGACAAGATGTGGGAGGGT
TTGGCGCTAATGGTGTTAAAGGAGAATTTTGGGACTGAGGGAGGGGACGC
CCGGGATCAGGATCTAAGGCGGTTGGCGTCTCTGTATAGTTGTGAGTGGG
TAGATGAGGTGGTAGCCTCTGCTACTGCTGGTGCTATTCATGGTGGGAGT
AATGATGGTCAGGTGACAGTTGCAGAAGAAAAAGAGGAAGGGGGAGGGGA
AGGACGGCACGAAGGGAGGCTGTGTAGTAACTGTGGGAAGGAGGCGAGCA
AGCGGTGTGGACGTTGCAATATTGCGTCAGAATGGTACTGTGGTCGGCAG
TGCCAGGTGGCAAAGTGGAAGAGTCATAAACCCGCGTGTGATACCGTGGT
GTCGGCGCGGGCAGTATGA
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Synonyms
Publications