NO01G01360.1, NO01G01360.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01360.1
Unique NameNO01G01360.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1346
Alignment locationchr1:351331..352676 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:351331..352676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01360.1 vs.
Match: EWM29073.1 (dehydroascorbate reductase [Nannochloropsis gaditana])

HSP 1 Score: 455.7 bits (1171), Expect = 1.300e-124
Identity = 235/332 (70.78%), Postives = 261/332 (78.61%), Query Frame = 0 
Query:   20 VFIQALLLLLLVVPTDAFFSPVSPSSSSSSRGSTLTTTAARITTAVFSGVFEPTTIGPNTRTIGTKDSRSSYSSGRSTSTGRNPLFSTTALASSARSTTGFGDARGRGVRDGQGRIELLCKAGPEGEALGDCPFCHYVQMVLRYKGLRYRLVPLAPEDKPEWLMEGYGGKMPCLVHDEEAYTDSATITQYLEYFFPGEVPLTLEEEDPELEEEVKAATSGVFGAFARYVKNHDKAQDPPLQAALFEELGKADALLQKTGGPFLAGDRITLDDMALAPKLYHVKVGVAHFKNVIIPPDLDALAAYMRNMFDMEIFQESSYPPDIITWGWGNAR 352
            V + ++ LLLLVV T AF  P+ P  SS+ R S++      +  A                   T  S +S   G  T   R+ + S+ ALAS ARSTTGFGDARGRG RD QGRIELLCKAGP+G ALGDCPFCHYVQMVLRYKGLRYRL+PL PEDKPEWL+EGYGGKMPCLVHDEEAYTDS TITQYLEYFFPGE PLT+E+E+PEL EEVK ATSGVFGAFARY+KN DK QDPPLQAAL EEL K D LLQKT GPFLAG+RITLDDMALAPKLYH+KVGVAHFKNVIIPP L ALAAYM+++FDM+IFQESSYPPD+ITWGWGNAR
Sbjct:    7 VQVSSISLLLLVVRTKAFLRPILPRYSSTLRASSVAVRYITLADA-------------------TPQSITSRIEGSHT---RSSMSSSIALAS-ARSTTGFGDARGRGARDEQGRIELLCKAGPDGAALGDCPFCHYVQMVLRYKGLRYRLIPLTPEDKPEWLVEGYGGKMPCLVHDEEAYTDSGTITQYLEYFFPGEEPLTVEDENPELAEEVKTATSGVFGAFARYMKNMDKEQDPPLQAALVEELNKVDTLLQKTKGPFLAGERITLDDMALAPKLYHIKVGVAHFKNVIIPPSLTALAAYMQHIFDMDIFQESSYPPDVITWGWGNAR 315
The following BLAST results are available for this feature:
BLAST of NO01G01360.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29073.11.300e-12470.78dehydroascorbate reductase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01360NO01G01360Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01360.1NO01G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01360.1.cds1NO01G01360.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01360.1 ID=NO01G01360.1|Name=NO01G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp
ATGAACAGAAGCCAAGTTCTGGCAAGGTTGACCAGCTTCTGACAAGGCAG
GGTGTCCCAAATACTTTTTTACTTTTTGTGCAAGCACGTCCAAACCCGTG
AAAAGCTAGCAGCAGCAGCAGCGCAGCAACAAGCCGCATACGCGTGACTA
TGACGGCCACCCGCGCAGCCACCACCACAAACGTCACGACGCGAGCATTT
CTACGTGTTTTCATACAAGCCCTCCTGCTCCTCCTTCTGGTCGTGCCCAC
GGACGCCTTTTTCAGCCCCGTCTCGCCTAGCAGCAGCAGCAGTAGCAGAG
GATCCACGCTCACTACCACCGCCGCACGCATAACCACCGCGGTGTTCTCT
GGGGTCTTTGAACCCACGACCATTGGGCCAAATACCCGAACCATCGGCAC
GAAAGATAGCAGGAGCAGCTATAGCAGCGGTCGCAGCACCAGCACCGGCC
GCAACCCCTTATTCTCAACCACTGCATTAGCCTCCTCAGCCCGCTCCACG
ACTGGATTTGGGGATGCCCGAGGGCGCGGTGTGCGGGATGGTCAGGGTCG
CATTGAGCTTCTGTGTAAGGCCGGACCGGAGGGGGAAGCCTTGGGAGATT
GCCCTTTCTGCCATTACGTGCAAATGGTGCTTCGATATAAGGGCCTACGG
TATCGCCTCGTGCCCCTGGCACCGGAGGACAAGCCTGAGTGGCTCATGGA
AGGGTACGGGGGTAAAATGCCTTGTTTGGTTCACGACGAGGAGGCTTACA
CGGACTCGGCTACCATTACGCAGTATCTGGAGTATTTCTTCCCCGGCGAG
GTTCCTCTGACATTGGAAGAAGAGGACCCGGAACTAGAGGAGGAGGTGAA
GGCCGCGACCTCGGGTGTGTTTGGCGCTTTTGCCCGCTACGTGAAAAACC
ACGACAAGGCACAAGATCCCCCCCTTCAAGCAGCCCTATTCGAAGAGCTA
GGTAAGGCGGACGCATTGCTGCAGAAGACGGGCGGGCCCTTCTTGGCTGG
GGACAGGATCACCCTCGATGACATGGCTTTGGCTCCCAAGCTTTATCACG
TGAAAGTCGGCGTGGCTCATTTCAAAAATGTGATTATTCCCCCGGATTTG
GACGCGTTAGCAGCGTATATGCGGAATATGTTTGATATGGAGATTTTCCA
AGAGAGTAGTTACCCTCCTGATATAATCACCTGGGGTTGGGGCAATGCCC
GGGGTCAGTAGATTCTAAGGAGGGAGAAAGGGAGGGAAGAAGGTAGGTAG
GTAGGTGAGTAGATAGATAGAGATGGGGACAAATAATTTGGGGGAACGTG
TACGAAGGAAAGGAAAAAAAGTGCGATCATTTTGGGAGGAACAGAT
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protein sequence of NO01G01360.1

>NO01G01360.1-protein ID=NO01G01360.1-protein|Name=NO01G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MTATRAATTTNVTTRAFLRVFIQALLLLLLVVPTDAFFSPVSPSSSSSSR
GSTLTTTAARITTAVFSGVFEPTTIGPNTRTIGTKDSRSSYSSGRSTSTG
RNPLFSTTALASSARSTTGFGDARGRGVRDGQGRIELLCKAGPEGEALGD
CPFCHYVQMVLRYKGLRYRLVPLAPEDKPEWLMEGYGGKMPCLVHDEEAY
TDSATITQYLEYFFPGEVPLTLEEEDPELEEEVKAATSGVFGAFARYVKN
HDKAQDPPLQAALFEELGKADALLQKTGGPFLAGDRITLDDMALAPKLYH
VKVGVAHFKNVIIPPDLDALAAYMRNMFDMEIFQESSYPPDIITWGWGNA
RGQ*
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mRNA from alignment at chr1:351331..352676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01360.1 ID=NO01G01360.1|Name=NO01G01360.1|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp|location=Sequence derived from alignment at chr1:351331..352676- (Nannochloropsis oceanica)
ATGAACAGAAGCCAAGTTCTGGCAAGGTTGACCAGCTTCTGACAAGGCAG
GGTGTCCCAAATACTTTTTTACTTTTTGTGCAAGCACGTCCAAACCCGTG
AAAAGCTAGCAGCAGCAGCAGCGCAGCAACAAGCCGCATACGCGTGACTA
TGACGGCCACCCGCGCAGCCACCACCACAAACGTCACGACGCGAGCATTT
CTACGTGTTTTCATACAAGCCCTCCTGCTCCTCCTTCTGGTCGTGCCCAC
GGACGCCTTTTTCAGCCCCGTCTCGCCTAGCAGCAGCAGCAGTAGCAGAG
GATCCACGCTCACTACCACCGCCGCACGCATAACCACCGCGGTGTTCTCT
GGGGTCTTTGAACCCACGACCATTGGGCCAAATACCCGAACCATCGGCAC
GAAAGATAGCAGGAGCAGCTATAGCAGCGGTCGCAGCACCAGCACCGGCC
GCAACCCCTTATTCTCAACCACTGCATTAGCCTCCTCAGCCCGCTCCACG
ACTGGATTTGGGGATGCCCGAGGGCGCGGTGTGCGGGATGGTCAGGGTCG
CATTGAGCTTCTGTGTAAGGCCGGACCGGAGGGGGAAGCCTTGGGAGATT
GCCCTTTCTGCCATTACGTGCAAATGGTGCTTCGATATAAGGGCCTACGG
TATCGCCTCGTGCCCCTGGCACCGGAGGACAAGCCTGAGTGGCTCATGGA
AGGGTACGGGGGTAAAATGCCTTGTTTGGTTCACGACGAGGAGGCTTACA
CGGACTCGGCTACCATTACGCAGTATCTGGAGTATTTCTTCCCCGGCGAG
GTTCCTCTGACATTGGAAGAAGAGGACCCGGAACTAGAGGAGGAGGTGAA
GGCCGCGACCTCGGGTGTGTTTGGCGCTTTTGCCCGCTACGTGAAAAACC
ACGACAAGGCACAAGATCCCCCCCTTCAAGCAGCCCTATTCGAAGAGCTA
GGTAAGGCGGACGCATTGCTGCAGAAGACGGGCGGGCCCTTCTTGGCTGG
GGACAGGATCACCCTCGATGACATGGCTTTGGCTCCCAAGCTTTATCACG
TGAAAGTCGGCGTGGCTCATTTCAAAAATGTGATTATTCCCCCGGATTTG
GACGCGTTAGCAGCGTATATGCGGAATATGTTTGATATGGAGATTTTCCA
AGAGAGTAGTTACCCTCCTGATATAATCACCTGGGGTTGGGGCAATGCCC
GGGGTCAGTAGATTCTAAGGAGGGAGAAAGGGAGGGAAGAAGGTAGGTAG
GTAGGTGAGTAGATAGATAGAGATGGGGACAAATAATTTGGGGGAACGTG
TACGAAGGAAAGGAAAAAAAGTGCGATCATTTTGGGAGGAACAGAT
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Coding sequence (CDS) from alignment at chr1:351331..352676-

>NO01G01360.1 ID=NO01G01360.1|Name=NO01G01360.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr1:351331..352676- (Nannochloropsis oceanica)
ATGACGGCCACCCGCGCAGCCACCACCACAAACGTCACGACGCGAGCATT
TCTACGTGTTTTCATACAAGCCCTCCTGCTCCTCCTTCTGGTCGTGCCCA
CGGACGCCTTTTTCAGCCCCGTCTCGCCTAGCAGCAGCAGCAGTAGCAGA
GGATCCACGCTCACTACCACCGCCGCACGCATAACCACCGCGGTGTTCTC
TGGGGTCTTTGAACCCACGACCATTGGGCCAAATACCCGAACCATCGGCA
CGAAAGATAGCAGGAGCAGCTATAGCAGCGGTCGCAGCACCAGCACCGGC
CGCAACCCCTTATTCTCAACCACTGCATTAGCCTCCTCAGCCCGCTCCAC
GACTGGATTTGGGGATGCCCGAGGGCGCGGTGTGCGGGATGGTCAGGGTC
GCATTGAGCTTCTGTGTAAGGCCGGACCGGAGGGGGAAGCCTTGGGAGAT
TGCCCTTTCTGCCATTACGTGCAAATGGTGCTTCGATATAAGGGCCTACG
GTATCGCCTCGTGCCCCTGGCACCGGAGGACAAGCCTGAGTGGCTCATGG
AAGGGTACGGGGGTAAAATGCCTTGTTTGGTTCACGACGAGGAGGCTTAC
ACGGACTCGGCTACCATTACGCAGTATCTGGAGTATTTCTTCCCCGGCGA
GGTTCCTCTGACATTGGAAGAAGAGGACCCGGAACTAGAGGAGGAGGTGA
AGGCCGCGACCTCGGGTGTGTTTGGCGCTTTTGCCCGCTACGTGAAAAAC
CACGACAAGGCACAAGATCCCCCCCTTCAAGCAGCCCTATTCGAAGAGCT
AGGTAAGGCGGACGCATTGCTGCAGAAGACGGGCGGGCCCTTCTTGGCTG
GGGACAGGATCACCCTCGATGACATGGCTTTGGCTCCCAAGCTTTATCAC
GTGAAAGTCGGCGTGGCTCATTTCAAAAATGTGATTATTCCCCCGGATTT
GGACGCGTTAGCAGCGTATATGCGGAATATGTTTGATATGGAGATTTTCC
AAGAGAGTAGTTACCCTCCTGATATAATCACCTGGGGTTGGGGCAATGCC
CGGGGTCAGTAG
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Synonyms
Publications