NO01G01330.1, NO01G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01330.1
Unique NameNO01G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length885
Alignment locationchr1:339347..340445 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:339347..340445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01330.1 vs.
Match: EWM29081.1 (Protein of unknown function UPF0568 [Nannochloropsis gaditana])

HSP 1 Score: 270.8 bits (691), Expect = 5.100e-69
Identity = 158/281 (56.23%), Postives = 199/281 (70.82%), Query Frame = 0
Query:    1 MAPATTTPADASLRRLLNAMAYPGLAAFTLDDPTEVRKAITWVEDRKIRLYDIDEREPLRTSGPGWNAAFRKYLDDVECPHLVKGEWAAASAQAKVQVLHWLFAKGLACEYVD---EAETYNPAA--AAAVAAAAAASPAEEE-------EGLPADFHERVHTLATRLGILPSSSSSSLSSSSTSPPFSSLLTTLQTILSVIQLRLSPAAFQATKEGQASDLQLDDFLLSYSTQDPVVDRVARAMTMLYVNDLRELQTDINDILVSAQEFTANPCVGGREG 270
            MA +T  P +A + RLL+A+ YP L+ F+LDDP +V KA+ ++EDRKIRLYDI++R+PLRT G  W+ A +KYL DV+CPH  +G+W A S  A+V+VLHWLF K LA  Y D   +A   + AA  AA++ A ++ +P E E       E +P DF ERV  L++RLG LP+ S SS +  +  P  SSLL TLQ ILS+IQLRLSP A  ATK+G  + L +DDF LSY+T DP+VDR ARA+TMLYV DLRELQTDINDILVSAQEFTANP V   EG
Sbjct:   20 MALSTRKPNEACIFRLLDALEYPALSTFSLDDPNQVCKAVWYIEDRKIRLYDIEDRKPLRTPGQEWSPALQKYLVDVQCPHSFEGKWNAVSETARVRVLHWLFVKALAFHYSDMSADAMKMDVAAGTAASIEANSSGTPMEVEAECAARGEHIPVDFDERVRALSSRLG-LPTPSPSSPNHPTPDP--SSLLKTLQGILSIIQLRLSPNAEVATKDGAVARLDIDDFPLSYTTHDPLVDRAARALTMLYVADLRELQTDINDILVSAQEFTANPYVACLEG 297          
The following BLAST results are available for this feature:
BLAST of NO01G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29081.15.100e-6956.23Protein of unknown function UPF0568 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01330NO01G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01330.1NO01G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01330.1.cds1NO01G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01330.1.cds2NO01G01330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01330.1 ID=NO01G01330.1|Name=NO01G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
ATGGCTCCCGCTACCACCACACCCGCAGACGCCAGCCTCCGCCGGCTCCT
CAATGCCATGGCCTACCCCGGCCTAGCTGCCTTTACACTGGATGACCCCA
CCGAAGTTCGCAAGGCCATCACCTGGGTGGAGGACCGCAAAATTCGCCTT
TATGACATTGACGAACGCGAACCCCTTCGCACATCCGGCCCGGGATGGAA
CGCAGCGTTTCGGAAGTATTTAGATGACGTGGAATGTCCTCATCTTGTGA
AGGGAGAGTGGGCTGCTGCCTCGGCGCAAGCAAAGGTACAGGTCCTGCAC
TGGCTTTTCGCGAAGGGCCTGGCTTGCGAATACGTGGATGAGGCAGAGAC
GTACAACCCAGCCGCCGCAGCAGCTGTGGCAGCAGCAGCAGCAGCATCTC
CAGCAGAGGAGGAGGAGGGCCTGCCGGCTGACTTTCACGAGCGAGTCCAC
ACCCTTGCCACGCGCCTCGGCATTCTCCCTTCCTCTTCCTCTTCCTCCCT
CTCCTCCTCTTCAACATCCCCTCCTTTCTCCTCCCTCCTCACTACCTTAC
AAACGATCCTTTCTGTCATTCAACTCCGTCTTTCTCCTGCTGCTTTCCAG
GCGACCAAAGAAGGGCAAGCCTCCGACCTCCAGCTTGACGACTTTCTTCT
CTCCTACTCCACTCAAGACCCGGTGGTGGACCGCGTTGCACGGGCAATGA
CCATGCTCTATGTCAACGATCTGAGAGAGCTACAAACGGATATAAACGAT
ATTCTCGTGTCGGCGCAGGAGTTTACCGCGAACCCGTGCGTGGGAGGGAG
GGAGGGACGGCAGGCTTCTGTGATCACATTTTTGCAAATCGTTTTCTCAT
TAACTTTCTTCTTCTTTTCTCTCCCCTTTGCCTGA
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protein sequence of NO01G01330.1

>NO01G01330.1-protein ID=NO01G01330.1-protein|Name=NO01G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MAPATTTPADASLRRLLNAMAYPGLAAFTLDDPTEVRKAITWVEDRKIRL
YDIDEREPLRTSGPGWNAAFRKYLDDVECPHLVKGEWAAASAQAKVQVLH
WLFAKGLACEYVDEAETYNPAAAAAVAAAAAASPAEEEEGLPADFHERVH
TLATRLGILPSSSSSSLSSSSTSPPFSSLLTTLQTILSVIQLRLSPAAFQ
ATKEGQASDLQLDDFLLSYSTQDPVVDRVARAMTMLYVNDLRELQTDIND
ILVSAQEFTANPCVGGREGRQASVITFLQIVFSLTFFFFSLPFA*
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mRNA from alignment at chr1:339347..340445+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01330.1 ID=NO01G01330.1|Name=NO01G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp|location=Sequence derived from alignment at chr1:339347..340445+ (Nannochloropsis oceanica)
ATGGCTCCCGCTACCACCACACCCGCAGACGCCAGCCTCCGCCGGCTCCT CAATGCCATGGCCTACCCCGGCCTAGCTGCCTTTACACTGGATGGTCCGT GCATGTCAGAATGGTACCCTTTCTTCTCGGCCCTTCACGTCCTGGCGCAT ATAACAAACCCCCCCTTATGCTTGTGAACATTTTGATGCTGTTTGTGATC TCGAGACTCATGTTGTCCTCTGACTTCTCTGACTAAATCTTACAAAACAT TCCAGTATGAAAAGCTCACCCCTAAACCAACTCCTCGCCTATCCAAACCC CCCACCAGACCCCACCGAAGTTCGCAAGGCCATCACCTGGGTGGAGGACC GCAAAATTCGCCTTTATGACATTGACGAACGCGAACCCCTTCGCACATCC GGCCCGGGATGGAACGCAGCGTTTCGGAAGTATTTAGATGACGTGGAATG TCCTCATCTTGTGAAGGGAGAGTGGGCTGCTGCCTCGGCGCAAGCAAAGG TACAGGTCCTGCACTGGCTTTTCGCGAAGGGCCTGGCTTGCGAATACGTG GATGAGGCAGAGACGTACAACCCAGCCGCCGCAGCAGCTGTGGCAGCAGC AGCAGCAGCATCTCCAGCAGAGGAGGAGGAGGGCCTGCCGGCTGACTTTC ACGAGCGAGTCCACACCCTTGCCACGCGCCTCGGCATTCTCCCTTCCTCT TCCTCTTCCTCCCTCTCCTCCTCTTCAACATCCCCTCCTTTCTCCTCCCT CCTCACTACCTTACAAACGATCCTTTCTGTCATTCAACTCCGTCTTTCTC CTGCTGCTTTCCAGGCGACCAAAGAAGGGCAAGCCTCCGACCTCCAGCTT GACGACTTTCTTCTCTCCTACTCCACTCAAGACCCGGTGGTGGACCGCGT TGCACGGGCAATGACCATGCTCTATGTCAACGATCTGAGAGAGCTACAAA CGGATATAAACGATATTCTCGTGTCGGCGCAGGAGTTTACCGCGAACCCG TGCGTGGGAGGGAGGGAGGGACGGCAGGCTTCTGTGATCACATTTTTGCA AATCGTTTTCTCATTAACTTTCTTCTTCTTTTCTCTCCCCTTTGCCTGA
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Coding sequence (CDS) from alignment at chr1:339347..340445+

>NO01G01330.1 ID=NO01G01330.1|Name=NO01G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at chr1:339347..340445+ (Nannochloropsis oceanica)
ATGGCTCCCGCTACCACCACACCCGCAGACGCCAGCCTCCGCCGGCTCCT
CAATGCCATGGCCTACCCCGGCCTAGCTGCCTTTACACTGGATGACCCCA
CCGAAGTTCGCAAGGCCATCACCTGGGTGGAGGACCGCAAAATTCGCCTT
TATGACATTGACGAACGCGAACCCCTTCGCACATCCGGCCCGGGATGGAA
CGCAGCGTTTCGGAAGTATTTAGATGACGTGGAATGTCCTCATCTTGTGA
AGGGAGAGTGGGCTGCTGCCTCGGCGCAAGCAAAGGTACAGGTCCTGCAC
TGGCTTTTCGCGAAGGGCCTGGCTTGCGAATACGTGGATGAGGCAGAGAC
GTACAACCCAGCCGCCGCAGCAGCTGTGGCAGCAGCAGCAGCAGCATCTC
CAGCAGAGGAGGAGGAGGGCCTGCCGGCTGACTTTCACGAGCGAGTCCAC
ACCCTTGCCACGCGCCTCGGCATTCTCCCTTCCTCTTCCTCTTCCTCCCT
CTCCTCCTCTTCAACATCCCCTCCTTTCTCCTCCCTCCTCACTACCTTAC
AAACGATCCTTTCTGTCATTCAACTCCGTCTTTCTCCTGCTGCTTTCCAG
GCGACCAAAGAAGGGCAAGCCTCCGACCTCCAGCTTGACGACTTTCTTCT
CTCCTACTCCACTCAAGACCCGGTGGTGGACCGCGTTGCACGGGCAATGA
CCATGCTCTATGTCAACGATCTGAGAGAGCTACAAACGGATATAAACGAT
ATTCTCGTGTCGGCGCAGGAGTTTACCGCGAACCCGTGCGTGGGAGGGAG
GGAGGGACGGCAGGCTTCTGTGATCACATTTTTGCAAATCGTTTTCTCAT
TAACTTTCTTCTTCTTTTCTCTCCCCTTTGCCTGA
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Synonyms
Publications