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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:335575..338582 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01320.1 vs.
Match: EWM29074.1 (map kinase [Nannochloropsis gaditana]) HSP 1 Score: 935.3 bits (2416), Expect = 1.000e-268 Identity = 506/646 (78.33%), Postives = 552/646 (85.45%), Query Frame = 0
Query: 1 MPFSSSSSSSSSSTSSLAMAAAAMGNSSAPSDVEGYLNKKGRVTWKRRYFTLHGNVISYYTKKGDAKFRNQMVLTAQSTFSDSSSKRNGFSIVTSGKGFQLNAETPEEKRAWTLAVVNAIRSLQRQSAASLSTSSASSSSSSTGSSGSRTMQHSSQGVIVGGKTKKDTKTFYVVGTEFVLDARYELIKPIGHGAYGVVISATDAQLGQKVAIKKCPNAFEDLVDAKRIVREIRLLMHFRHENIVRVLDLQAPPVADFDDVYIISELMDTDLHRVIYSRQKLTEDHVQFFLYQMLCALKYIHSAKVIHRDLKPSNILLNSNCDLKICDFGLSRGVCPVGEQEASDLTEYVVTRWYRAPEIMLSCPEYTTAIDVWAVGCIFGEMLGRKPLFPGNDYIHQLKLITKLLGTPSAEELAFVTNHKARRFMLNLPKEPQSSLPSNLQAKYPDASPEALALLRRMLVIDPAKRITVAEALEMPYLSSLHDPVVEIMAESDVHWGDIESCELSKVNLQRQILEDLIRFHPEARSFLRDRRVACGMPPEEKAGEGSGRGEGPGAASRLEGLDEGAGEGVL-------KGGDEARS-VDVLADRFGGMGMVGNGGGREG---GREGGRVVGNGTDHHGLKRATEGGAEARIAAARA 636
MPFSS+SSSSSSS + AM AAA N + P++VEG+LNKKGR+TWKRRYFTLHG++I+YY KKGDAK RNQM LTAQS FS SSSK+NGFSIVT+GKGFQLNAETP++K AW +AV +AIRSLQ Q A S T SS R++ SS G+ + +K+TK FYVVGTEFVLDARYELIKPIGHGAYGVVISATD QLGQKVAIKKCPNAFEDLVDAKRIVREIRLLMHF+HENIVRVLDLQAPPVADFDDVYIISELMDTDLHRVIYSRQKLT+DHVQFFLYQMLCALKYIHSA VIHRDLKPSNILLNSNCDLKICDFGLSRGV PVG QEASDLTEYVVTRWYRAPEIMLSCPEYTTAIDVWAVGCIFGEMLGRKPLFPGNDYIHQLKLITKL+GTPSAEELAFVTNHKARRFMLNLPKEPQSSLPSNL++KYPDASPEAL+LLR+MLVIDPAKRITVAEALE PYL+SLHDPVVE MA+SDVHWGDIESCELSKVNLQRQILED+IRFHPEA+ FLRDRR+ACG+PPEE+ GEGS RG G G A+R E E G L KG + A+S VD L+DR G M +GNG REG G EG + +GTD HGLK+AT GG EA++AA A
Sbjct: 1 MPFSSTSSSSSSSAA--AMMAAAQSNRT-PAEVEGWLNKKGRMTWKRRYFTLHGHIITYYAKKGDAKCRNQMALTAQSVFSSSSSKKNGFSIVTAGKGFQLNAETPQDKHAWAVAVTSAIRSLQAQQAGS---------GGMTSSSSGRSLSRSSSGL----RGRKNTKIFYVVGTEFVLDARYELIKPIGHGAYGVVISATDNQLGQKVAIKKCPNAFEDLVDAKRIVREIRLLMHFQHENIVRVLDLQAPPVADFDDVYIISELMDTDLHRVIYSRQKLTDDHVQFFLYQMLCALKYIHSANVIHRDLKPSNILLNSNCDLKICDFGLSRGVMPVGTQEASDLTEYVVTRWYRAPEIMLSCPEYTTAIDVWAVGCIFGEMLGRKPLFPGNDYIHQLKLITKLVGTPSAEELAFVTNHKARRFMLNLPKEPQSSLPSNLKSKYPDASPEALSLLRKMLVIDPAKRITVAEALEQPYLASLHDPVVETMADSDVHWGDIESCELSKVNLQRQILEDMIRFHPEAKPFLRDRRIACGLPPEERQGEGSSRGTGAGVATRPEKAKEVGKVGSLKREGSLRKGEEGAKSMVDGLSDRVGDM-RLGNGSRREGEKKGEEGEK--DDGTDDHGLKKATIGGTEAKLAATMA 627
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01320.1 ID=NO01G01320.1|Name=NO01G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp ATGCCCTTCTCCTCCTCCTCCTCCTCGTCGTCGTCCTCCACGTCGTCCTT GGCAATGGCAGCCGCCGCCATGGGCAACAGCAGCGCCCCTTCCGATGTGG AAGGATACTTGAATAAAAAAGGACGTGTGACTTGGAAGCGGCGTTATTTT ACCCTCCACGGCAATGTCATTTCCTATTACACCAAGAAAGGTGATGCAAA ATTTAGAAACCAAATGGTTTTGACGGCACAGAGCACTTTCTCAGACTCCT CTTCTAAGAGAAACGGCTTCTCCATCGTCACGTCCGGCAAAGGTTTCCAA CTCAATGCTGAGACCCCAGAAGAAAAACGAGCATGGACGCTGGCGGTCGT CAACGCTATTCGCTCCCTCCAACGGCAATCAGCTGCATCTCTTTCAACCA GTAGTGCCAGCAGCAGCAGCAGCAGCACCGGTAGCAGTGGCAGCCGCACG ATGCAACATTCATCGCAGGGGGTGATTGTGGGTGGGAAAACGAAGAAGGA TACGAAGACATTTTACGTGGTGGGGACGGAATTTGTGTTGGACGCAAGAT ATGAGCTGATTAAGCCCATTGGGCATGGTGCTTATGGGGTGGTTATATCC GCGACTGATGCTCAGCTTGGGCAGAAGGTGGCGATTAAGAAGTGTCCGAA TGCCTTCGAAGATCTGGTGGATGCCAAGAGGATCGTTCGGGAGATCCGGC TGTTGATGCATTTCCGCCATGAGAACATCGTGAGGGTGCTGGATTTGCAG GCGCCGCCAGTGGCTGACTTCGATGACGTCTACATCATCAGCGAGTTGAT GGATACGGATTTGCACCGAGTCATTTACTCGAGGCAGAAGCTCACGGAGG ACCACGTGCAATTCTTCTTGTATCAGATGCTCTGCGCCCTGAAGTACATT CATTCCGCCAAGGTCATCCACCGGGACTTGAAGCCCTCCAACATCCTCCT CAACTCCAACTGCGACCTCAAGATCTGTGACTTTGGCCTCTCCCGCGGTG TCTGCCCCGTCGGAGAACAAGAAGCGAGCGATCTAACCGAATACGTTGTG ACGAGGTGGTACAGGGCGCCTGAGATCATGCTCTCCTGCCCCGAGTACAC CACTGCCATTGACGTGTGGGCCGTAGGTTGCATCTTCGGAGAAATGTTAG GACGAAAGCCCCTTTTCCCCGGCAACGACTACATTCACCAGCTTAAGCTC ATCACCAAACTACTCGGGACGCCATCAGCAGAGGAGCTCGCCTTTGTGAC CAACCATAAAGCCCGTCGTTTTATGCTCAACCTGCCCAAGGAGCCCCAGT CCTCCCTCCCGTCGAACCTCCAAGCAAAATACCCGGATGCCAGCCCCGAG GCCCTGGCCCTCCTGCGTCGCATGCTCGTCATCGACCCGGCCAAGAGAAT AACAGTTGCGGAAGCGCTGGAGATGCCCTACCTCTCCTCGTTGCACGATC CTGTGGTAGAGATCATGGCGGAATCAGACGTGCACTGGGGCGACATCGAG AGCTGCGAGCTCAGCAAGGTCAACTTACAGAGACAGATTCTGGAAGACTT GATCCGGTTCCACCCCGAGGCCAGGTCATTTTTGAGGGACCGACGCGTGG CCTGTGGGATGCCGCCTGAGGAGAAGGCCGGGGAAGGAAGTGGCCGAGGA GAAGGGCCAGGGGCGGCGTCGAGACTGGAGGGATTGGACGAGGGCGCGGG GGAGGGAGTGTTGAAGGGGGGGGATGAGGCACGGTCAGTAGACGTCTTGG CGGACAGATTTGGGGGGATGGGGATGGTAGGAAATGGCGGGGGAAGGGAG GGAGGGAGGGAGGGAGGGAGGGTCGTGGGGAATGGAACAGATCATCATGG GCTGAAGAGGGCGACGGAGGGCGGAGCAGAGGCCAGGATTGCGGCCGCGA GAGCAGCTGCAGGGAAGGAGGGTGTGAATCACTAG back to topprotein sequence of NO01G01320.1 >NO01G01320.1-protein ID=NO01G01320.1-protein|Name=NO01G01320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp MPFSSSSSSSSSSTSSLAMAAAAMGNSSAPSDVEGYLNKKGRVTWKRRYF TLHGNVISYYTKKGDAKFRNQMVLTAQSTFSDSSSKRNGFSIVTSGKGFQ LNAETPEEKRAWTLAVVNAIRSLQRQSAASLSTSSASSSSSSTGSSGSRT MQHSSQGVIVGGKTKKDTKTFYVVGTEFVLDARYELIKPIGHGAYGVVIS ATDAQLGQKVAIKKCPNAFEDLVDAKRIVREIRLLMHFRHENIVRVLDLQ APPVADFDDVYIISELMDTDLHRVIYSRQKLTEDHVQFFLYQMLCALKYI HSAKVIHRDLKPSNILLNSNCDLKICDFGLSRGVCPVGEQEASDLTEYVV TRWYRAPEIMLSCPEYTTAIDVWAVGCIFGEMLGRKPLFPGNDYIHQLKL ITKLLGTPSAEELAFVTNHKARRFMLNLPKEPQSSLPSNLQAKYPDASPE ALALLRRMLVIDPAKRITVAEALEMPYLSSLHDPVVEIMAESDVHWGDIE SCELSKVNLQRQILEDLIRFHPEARSFLRDRRVACGMPPEEKAGEGSGRG EGPGAASRLEGLDEGAGEGVLKGGDEARSVDVLADRFGGMGMVGNGGGRE GGREGGRVVGNGTDHHGLKRATEGGAEARIAAARAAAGKEGVNH* back to topmRNA from alignment at chr1:335575..338582- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01320.1 ID=NO01G01320.1|Name=NO01G01320.1|organism=Nannochloropsis oceanica|type=mRNA|length=3008bp|location=Sequence derived from alignment at chr1:335575..338582- (Nannochloropsis oceanica) ATGCCCTTCTCCTCCTCCTCCTCCTCGTCGTCGTCCTCCACGTCGTCCTT
GGCAATGGCAGCCGCCGCCATGGGCAACAGCAGCGCCCCTTCCGATGTGG
AAGGATACTTGAATAAAAAAGGACGTGTGACTTGGAAGCGGCGTTATTTT
ACCCTCCACGGCAATGTCATTTCCTATTACACCAAGAAAGGTGATGCAAA
ATTTAGAAACCAAATGGTTTTGACGGCACAGGTAGGGAAAGGATGATAAA
GAGGGTTGGGGGAGAAGGGGAGCTATAGTTTATACGGGAAGACTTGCTGT
ATTTTCCTGAGTCGTTGGCTGCCGGCCTTAACTCATGAGGTACACTGAAC
ACTCCCCACCCCTCCCTCCCTCCCTCCCTCCCTCGCTCCCTCCATCACAC
AGAGCACTTTCTCAGACTCCTCTTCTAAGAGAAACGGCTTCTCCATCGTC
ACGTCCGGCAAAGGTTTCCAACTCAATGCTGAGACCCCAGAAGAAAAACG
AGCATGGACGCTGGCGGTCGTCAACGCTATTCGCTCCCTCCAACGGCAAT
CAGCTGCATCTCTTTCAACCAGTAGTGCCAGCAGCAGCAGCAGCAGCACC
GGTAGCAGTGGCAGCCGCACGATGCAACATTCATCGCAGGGGGTGATTGT
GGGTGGGAAAACGAAGAAGGATACGAAGACATTTTACGTGGTGGGGACGG
AATTTGTGTTGGACGCAAGATATGAGCTGATTAAGCCCATTGGGCATGGT
GCTTATGGGGTGGTTATATCCGCGACTGATGCTCAGCTTGGGCAGAAGGT
GGCGATTAAGAAGTGTCCGAATGCCTTCGAAGATCTGGTGGATGCCAAGA
GGATCGTTCGGGAGATCCGGCTGTTGATGCATTTCCGCCATGAGAACATC
GTGAGGGTGCTGGATTTGCAGGCGCCGCCAGTGGCTGACTTCGATGACGT
CTACATCATCAGCGAGTTGATGGATACGGATTTGCACCGAGTCATTTACT
CGAGGCAGAAGCTCACGGAGGACCACGTGCAATTCTTCTTGTATCAGATG
CTCTGCGCCCTGAAGTACATTCATTCCGCCAAGGTCATCCACCGGGACTT
GAAGGTAGACCTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCCTTGCCTACTTCCCTCCCTTTCCGAGTTCCCTCCCGACTTTACTTCC
GAACCCCATTTGCACCGGAAAGCGGCCCATTTTCATATTTCGAATGAGGC
TCTACGTATCTGACGTGACATGAAAGAGCACGGAATGTCCACGCTGATCC
CCCACCCACCCGTCCCTCCCTCTATCCCTCCCTCCCTAGCCCTCCAACAT
CCTCCTCAACTCCAACTGCGACCTCAAGATCTGTGACTTTGGCCTCTCCC
GCGGTGTCTGCCCCGTCGGAGAACAAGAAGCGAGCGATCTAACCGAATAC
GTTGTGACGAGGTGGTACAGGGCGCCTGAGATCATGCTCTCCTGCCCCGA
GTACACCACTGCCATTGGTACCTCCCTCCCTCCCTCCCTCTCTCCCTCCC
TCCCTCCCTCCCTCCCTCACTTCCTACCCGGCGTCCTTGTCTTTGTTCAA
GGGGTATGGATGGGAGTTTCCTCCTGATGTACAAAACAAGAGACATTGCG
TTCACCAACTTCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCCCCCTCCCCGTCTTCCTCCCCAGACGTG
TGGGCCGTAGGTTGCATCTTCGGAGAAATGTTAGGACGAAAGCCCCTTTT
CCCCGGCAACGACTACATTCACCAGCTTAAGCTCATCACCAAACTACTCG
GGACGCCATCAGCAGAGGTACGTGCATGGATCCCTCCCTCCCTCCCTCCC
TTCTGAAAAAAACTCTTGTCTTCCAGCTTTTCTCAGCCCCGCCCTCCCTC
CCTCCTTCCCTCCCTCCCTCCTTTCCCCCCTCCCTCCCTGCAGGAGCTCG
CCTTTGTGACCAACCATAAAGCCCGTCGTTTTATGCTCAACCTGCCCAAG
GAGCCCCAGTCCTCCCTCCCGTCGAACCTCCAAGCAAAATACCCGGATGC
CAGCCCCGAGGCCCTGGCCCTCCTGCGTCGCATGCTCGTCATCGACCCGG
CCAAGAGAATAACAGTTGCGGAAGCGCTGGAGATGCCCTACCTCTCCTCG
TTGCACGATCCTGTGGTAGAGATCATGGCGGAATCAGGTATGTCTTGCCT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTTCCTCTTTTTGTCGCG
TCCCATCTGATCGTTCTTAATCGACTTACGCTCTTTCAAACCATCTTCTC
ATCGCTCTCTCCCTATCCCCTTTCCTCCCTCCCTCCCTCATTTCCTCCCT
CCTTACAGACGTGCACTGGGGCGACATCGAGAGCTGCGAGCTCAGCAAGG
TCAACTTACAGAGACAGGTCCGCAACCCCTCCCTCCCTCTCTCCTTTCCT
CCCTCTTTCCCTCCTTTCAATGAGATGATGTCCAGCAACTCACCCTCCCT
CCCTCCGTCCCTCCCTCCCTCCGTCCCTCCCTCCTTCCGTTCCTCCCTCC
CTCCTTTAGATTCTGGAAGACTTGATCCGGTTCCACCCCGAGGCCAGGTC
ATTTTTGAGGGACCGACGCGTGGCCTGTGGGATGCCGCCTGAGGAGAAGG
CCGGGGAAGGAAGTGGCCGAGGAGAAGGGCCAGGGGCGGCGTCGAGACTG
GAGGGATTGGACGAGGGCGCGGGGGAGGGAGTGTTGAAGGGGGGGGATGA
GGCACGGTCAGTAGACGTCTTGGCGGACAGATTTGGGGGGATGGGGATGG
TAGGAAATGGCGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGTCGTG
GGGAATGGAACAGATCATCATGGGCTGAAGAGGGCGACGGAGGGCGGAGC
AGAGGCCAGGATTGCGGCCGCGAGAGCAGCTGCAGGGAAGGAGGGTGTGA
ATCACTAG back to topCoding sequence (CDS) from alignment at chr1:335575..338582- >NO01G01320.1 ID=NO01G01320.1|Name=NO01G01320.1|organism=Nannochloropsis oceanica|type=CDS|length=1935bp|location=Sequence derived from alignment at chr1:335575..338582- (Nannochloropsis oceanica) ATGCCCTTCTCCTCCTCCTCCTCCTCGTCGTCGTCCTCCACGTCGTCCTT GGCAATGGCAGCCGCCGCCATGGGCAACAGCAGCGCCCCTTCCGATGTGG AAGGATACTTGAATAAAAAAGGACGTGTGACTTGGAAGCGGCGTTATTTT ACCCTCCACGGCAATGTCATTTCCTATTACACCAAGAAAGGTGATGCAAA ATTTAGAAACCAAATGGTTTTGACGGCACAGAGCACTTTCTCAGACTCCT CTTCTAAGAGAAACGGCTTCTCCATCGTCACGTCCGGCAAAGGTTTCCAA CTCAATGCTGAGACCCCAGAAGAAAAACGAGCATGGACGCTGGCGGTCGT CAACGCTATTCGCTCCCTCCAACGGCAATCAGCTGCATCTCTTTCAACCA GTAGTGCCAGCAGCAGCAGCAGCAGCACCGGTAGCAGTGGCAGCCGCACG ATGCAACATTCATCGCAGGGGGTGATTGTGGGTGGGAAAACGAAGAAGGA TACGAAGACATTTTACGTGGTGGGGACGGAATTTGTGTTGGACGCAAGAT ATGAGCTGATTAAGCCCATTGGGCATGGTGCTTATGGGGTGGTTATATCC GCGACTGATGCTCAGCTTGGGCAGAAGGTGGCGATTAAGAAGTGTCCGAA TGCCTTCGAAGATCTGGTGGATGCCAAGAGGATCGTTCGGGAGATCCGGC TGTTGATGCATTTCCGCCATGAGAACATCGTGAGGGTGCTGGATTTGCAG GCGCCGCCAGTGGCTGACTTCGATGACGTCTACATCATCAGCGAGTTGAT GGATACGGATTTGCACCGAGTCATTTACTCGAGGCAGAAGCTCACGGAGG ACCACGTGCAATTCTTCTTGTATCAGATGCTCTGCGCCCTGAAGTACATT CATTCCGCCAAGGTCATCCACCGGGACTTGAAGCCCTCCAACATCCTCCT CAACTCCAACTGCGACCTCAAGATCTGTGACTTTGGCCTCTCCCGCGGTG TCTGCCCCGTCGGAGAACAAGAAGCGAGCGATCTAACCGAATACGTTGTG ACGAGGTGGTACAGGGCGCCTGAGATCATGCTCTCCTGCCCCGAGTACAC CACTGCCATTGACGTGTGGGCCGTAGGTTGCATCTTCGGAGAAATGTTAG GACGAAAGCCCCTTTTCCCCGGCAACGACTACATTCACCAGCTTAAGCTC ATCACCAAACTACTCGGGACGCCATCAGCAGAGGAGCTCGCCTTTGTGAC CAACCATAAAGCCCGTCGTTTTATGCTCAACCTGCCCAAGGAGCCCCAGT CCTCCCTCCCGTCGAACCTCCAAGCAAAATACCCGGATGCCAGCCCCGAG GCCCTGGCCCTCCTGCGTCGCATGCTCGTCATCGACCCGGCCAAGAGAAT AACAGTTGCGGAAGCGCTGGAGATGCCCTACCTCTCCTCGTTGCACGATC CTGTGGTAGAGATCATGGCGGAATCAGACGTGCACTGGGGCGACATCGAG AGCTGCGAGCTCAGCAAGGTCAACTTACAGAGACAGATTCTGGAAGACTT GATCCGGTTCCACCCCGAGGCCAGGTCATTTTTGAGGGACCGACGCGTGG CCTGTGGGATGCCGCCTGAGGAGAAGGCCGGGGAAGGAAGTGGCCGAGGA GAAGGGCCAGGGGCGGCGTCGAGACTGGAGGGATTGGACGAGGGCGCGGG GGAGGGAGTGTTGAAGGGGGGGGATGAGGCACGGTCAGTAGACGTCTTGG CGGACAGATTTGGGGGGATGGGGATGGTAGGAAATGGCGGGGGAAGGGAG GGAGGGAGGGAGGGAGGGAGGGTCGTGGGGAATGGAACAGATCATCATGG GCTGAAGAGGGCGACGGAGGGCGGAGCAGAGGCCAGGATTGCGGCCGCGA GAGCAGCTGCAGGGAAGGAGGGTGTGAATCACTAG back to top
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