NO01G01310.1, NO01G01310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01310.1
Unique NameNO01G01310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1191
Alignment locationchr1:333440..334843 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:333440..334843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G01310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01310NO01G01310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01310.1NO01G01310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01310.1.cds1NO01G01310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01310.1.cds2NO01G01310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01310.1.cds3NO01G01310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01310.1 ID=NO01G01310.1|Name=NO01G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
ATGGCAACAGCCAGCACCAAGGCTGCTTTGCCCCCGAATCCAAATCCCCC
CGATGAGGAAGCTTTGCCGTCACCAAGCAGAGGCAAGGAGCATGAGCTTG
AGCAGGAGCAGCAGGAGCAGCAGGAGCGCACAATCGCATTGCTGGCTGCC
AACCCAACCTTCCGCCAACACGTGGACGCCGCTTTACAGGCTGAGTTCAA
GCGCCAGGCTCACTTGACTGCTATGCGCATCCTGGCCGAGAACAGTTCGG
CTCAGACCTGTCGAAGACAGCTGAAAGAGGAGGAGGCAGAGGAGAAGACG
GAACCTCAACCCTCCTCCCTTGCACTATCGATCCCTCCTCTCTCCTCCAG
CCATCCATCTCCTTCCCTATTTCCTGCCAGTAGAGTTAACGACGTAGGAG
TGATAGCCAGAAGGGAAGGAGGGGAAGCAGGAGCAGGAACAGATTCAGGA
GTCCCTTTGGAAAGAGAAGGAGCAGAAGCTTCGAAAAGAGAAGGGATCGA
AGCAGGGGCAGAGATTACGAAAAGCACCAAGCACGCAGCCGCAGCCGCAG
CAGGAGCAGTAGCCGCAGTCGTGCCCTTCGTCGTGGATATTCGCCTCCTC
CATCTCCCCGTCATAGTCACCCATGGCACGAGCGAGGCCAAATGCAAGGA
AGAAGGGTATCGTGGGGGGGAAGGTGTAGCCGCAGGCGCAGCCGGAGTTG
GGAGAGGGGGAGGACCAGGGGTAGGGCTGGATATGTGTGGACCTGGCGGT
GAAATAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGGACGAGGGGTGA
GGAAGAAGGACAAGGAGGGGTAGGAAGAAGAGGAGGAAGTGTGCTGAAGG
AGGAGGGAATGGGAGAGGGTCAGAAGAAGGGAAGAAATGACGCAGTGCTG
AAGCAAGTAAAACGGCAAGAGGGAGTGGAGAAGGAGAAACAGGTCCTTCC
GTCCGTGGAGATGAAGGAGGAAGGAGGAAAGAAGAGGAGATACGGGGAAG
AGGATTTGTTGGCAGTCGCATGTAAATCGCTTAAAGCCCCCGAAAATGAG
AAAAATCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAAAAGGAGGAGGAGGAGAAGAAGGAGAAGGAGAAGGAGAAGGAGA
AGAAGAAGGAGAAGCCCAAGAAGGAGAAGAAACACAAATAG
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protein sequence of NO01G01310.1

>NO01G01310.1-protein ID=NO01G01310.1-protein|Name=NO01G01310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MATASTKAALPPNPNPPDEEALPSPSRGKEHELEQEQQEQQERTIALLAA
NPTFRQHVDAALQAEFKRQAHLTAMRILAENSSAQTCRRQLKEEEAEEKT
EPQPSSLALSIPPLSSSHPSPSLFPASRVNDVGVIARREGGEAGAGTDSG
VPLEREGAEASKREGIEAGAEITKSTKHAAAAAAGAVAAVVPFVVDIRLL
HLPVIVTHGTSEAKCKEEGYRGGEGVAAGAAGVGRGGGPGVGLDMCGPGG
EIGGGGGGGGGGRTRGEEEGQGGVGRRGGSVLKEEGMGEGQKKGRNDAVL
KQVKRQEGVEKEKQVLPSVEMKEEGGKKRRYGEEDLLAVACKSLKAPENE
KNLKKKKKKKKKKKKKKKKKEEEEKKEKEKEKEKKKEKPKKEKKHK*
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mRNA from alignment at chr1:333440..334843+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01310.1 ID=NO01G01310.1|Name=NO01G01310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp|location=Sequence derived from alignment at chr1:333440..334843+ (Nannochloropsis oceanica)
ATGGCAACAGCCAGCACCAAGGCTGCTTTGCCCCCGAATCCAAATCCCCC
CGATGAGGAAGCTTTGCCGTCACCAAGCAGAGGCAAGGAGCATGAGCTTG
AGCAGGAGCAGCAGGAGCAGCAGGAGCGCACAATCGCATTGCTGGCTGCC
AACCCAACCTTCCGCCAACACGTGGACGCCGCTTTACAGGCTGAGTTCAA
GCGCCAGGCTCACTTGACTGCTATGCGCATCCTGGCCGAGAACAGTTCGG
CTCAGACCTGTCGAAGACAGCTGAAAGAGGAGGAGGCAGAGGAGAAGACG
GAACCTCAACCCTCCTCCCTTGCACTATCGATCCCTCCTCTCTCCTCCAG
CCATCCATCTCCTTCCCTATTTCCTGCCAGTAGAGTTAACGACGTAGGTA
ACGACAAGCAGAAGCAGGAGCAACGACAGATCCTGAAGACTGTGGCCGAA
AAATACAGTGCAAGCCGCTCTCGTTCCCCCTCGGCAAAGGACACCCACCG
TTTGCACGATCATGACAGGAGTGATAGCCAGAAGGGAAGGAGGGGAAGCA
GGAGCAGGAACAGATTCAGGAGTCCCTTTGGAAAGAGAAGGAGCAGAAGC
TTCGAAAAGAGAAGGGATCGAAGCAGGGGCAGAGATTACGAAAAGCACCA
AGCACGCAGCCGCAGCCGCAGCAGGAGCAGTAGCCGCAGTCGTGCCCTTC
GTCGTGGATATTCGCCTCCTCCATCTCCCCGTCATAGTCACCCATGGCAC
GAGCGAGGCCAAATGCAAGGAAGAAGGGTATCGTGGGGGGGAAGGTGTAG
CCGCAGGCGCAGCCGGAGTTGGGAGAGGGGGAGGACCAGGGGTAGGGTCA
GATCACCCTCCCGTTCTCTGCCGCGGTCACGGGAGGAGGGAGATGATTCT
TTCGTCCGTGTCGGTGGGTGGTATGGCCGGGAGAAAAGGCTGGATATGTG
TGGACCTGGCGGTGAAATAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGC
GGACGAGGGGTGAGGAAGAAGGACAAGGAGGGGTAGGAAGAAGAGGAGGA
AGTGTGCTGAAGGAGGAGGGAATGGGAGAGGGTCAGAAGAAGGGAAGAAA
TGACGCAGTGCTGAAGCAAGTAAAACGGCAAGAGGGAGTGGAGAAGGAGA
AACAGGTCCTTCCGTCCGTGGAGATGAAGGAGGAAGGAGGAAAGAAGAGG
AGATACGGGGAAGAGGATTTGTTGGCAGTCGCATGTAAATCGCTTAAAGC
CCCCGAAAATGAGAAAAATCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAAAAAGGAGGAGGAGGAGAAGAAGGAGAAGGAG
AAGGAGAAGGAGAAGAAGAAGGAGAAGCCCAAGAAGGAGAAGAAACACAA
ATAG
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Coding sequence (CDS) from alignment at chr1:333440..334843+

>NO01G01310.1 ID=NO01G01310.1|Name=NO01G01310.1|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at chr1:333440..334843+ (Nannochloropsis oceanica)
ATGGCAACAGCCAGCACCAAGGCTGCTTTGCCCCCGAATCCAAATCCCCC
CGATGAGGAAGCTTTGCCGTCACCAAGCAGAGGCAAGGAGCATGAGCTTG
AGCAGGAGCAGCAGGAGCAGCAGGAGCGCACAATCGCATTGCTGGCTGCC
AACCCAACCTTCCGCCAACACGTGGACGCCGCTTTACAGGCTGAGTTCAA
GCGCCAGGCTCACTTGACTGCTATGCGCATCCTGGCCGAGAACAGTTCGG
CTCAGACCTGTCGAAGACAGCTGAAAGAGGAGGAGGCAGAGGAGAAGACG
GAACCTCAACCCTCCTCCCTTGCACTATCGATCCCTCCTCTCTCCTCCAG
CCATCCATCTCCTTCCCTATTTCCTGCCAGTAGAGTTAACGACGTAGGAG
TGATAGCCAGAAGGGAAGGAGGGGAAGCAGGAGCAGGAACAGATTCAGGA
GTCCCTTTGGAAAGAGAAGGAGCAGAAGCTTCGAAAAGAGAAGGGATCGA
AGCAGGGGCAGAGATTACGAAAAGCACCAAGCACGCAGCCGCAGCCGCAG
CAGGAGCAGTAGCCGCAGTCGTGCCCTTCGTCGTGGATATTCGCCTCCTC
CATCTCCCCGTCATAGTCACCCATGGCACGAGCGAGGCCAAATGCAAGGA
AGAAGGGTATCGTGGGGGGGAAGGTGTAGCCGCAGGCGCAGCCGGAGTTG
GGAGAGGGGGAGGACCAGGGGTAGGGCTGGATATGTGTGGACCTGGCGGT
GAAATAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCGGACGAGGGGTGA
GGAAGAAGGACAAGGAGGGGTAGGAAGAAGAGGAGGAAGTGTGCTGAAGG
AGGAGGGAATGGGAGAGGGTCAGAAGAAGGGAAGAAATGACGCAGTGCTG
AAGCAAGTAAAACGGCAAGAGGGAGTGGAGAAGGAGAAACAGGTCCTTCC
GTCCGTGGAGATGAAGGAGGAAGGAGGAAAGAAGAGGAGATACGGGGAAG
AGGATTTGTTGGCAGTCGCATGTAAATCGCTTAAAGCCCCCGAAAATGAG
AAAAATCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAAAAGGAGGAGGAGGAGAAGAAGGAGAAGGAGAAGGAGAAGGAGA
AGAAGAAGGAGAAGCCCAAGAAGGAGAAGAAACACAAATAG
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Synonyms
Publications