|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr1 | genome | chr1:322898..325066 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01270.1 vs.
Match: EWM29098.1 (aarF domain-containing protein kinase [Nannochloropsis gaditana]) HSP 1 Score: 983.8 bits (2542), Expect = 2.900e-283 Identity = 533/735 (72.52%), Postives = 596/735 (81.09%), Query Frame = 0
Query: 3 ARRRVFYLCVLGTLTWRGHGSIHQPPPLHATTQQ--------QQQQPQHQ-QRQQTRPQIRPVSAAGKACPSSTSPSSSPSLSLPARGGGD---TTNGKHLHVQDTDMKKLMKKGQLQAASFDKTDDVGSSMDSQEIAPSRLALVRRGLYLLYLFSAAIFTAFLALISERFRNPYWYRMITCAISRAGAAFIKWGQWASARPDIFPEELCITLAMLHSYAPKHSFAFTKQAIEEAFGKPLEETFDAFDPEPIASGSIAQVHAAVMKGTRVAVKVRHPGVAEQIEKDFRIMRRVAEIADTIPALKFLNLGHSMEQFSHTLASQTKLDVEGRHLLLLNHNFKGWKSTLRFPEPFVLSEGILVESWEEGVIISDFIARYSKWRELEEEGCQMCGVVLGAYTHLRLFIQDTLLLPVKPLLDARRKKARIKRAETREREESAADAAAEVAENAAAAAGGGEGGVGGDAAAASLAELKKAAGKRRTPLSMELAHFVVSTGEDLYLKMLLVDNLMHADLHPGNILIHLKKNGRPVLTLVDAGMVAKLTDMERTNFIGLLEAMGTGDGARAAGHVLGFSVTQTCTGEDAVAFTKEMEEVFARYCRGYGTGVNMGVVLREVLAKVRKFHVRVDVNYATLLINLLCLEGLASALLPSYNILDRAKPLLAPHSNKLIRPFFRKIYPLLLSFKRHTDSAVFNLMKRTSN-----APLAITDGTSDED-KAPPPLLPANRHAPRMKEP 720
ARRR+FYL LG L RG GS+ HA++ + + + QH +RQQ PQIRP SA GK C S +S S+ S SLP+RGG + G +HVQDT+MKKL+K+GQLQA FDK D +SMD +PSR ALVRRGLYLLYLFSAAI TA LAL+SERFR+PYWYRMITCAIS+AGAAFIKWGQWASARPDIFPEE C TLAMLHS+AP HSFAFTKQAIEEAF +PLEE F+AFDP+PIASGSIAQVHAAVMKG RVAVKVRHPGVA QI+ DFR+M++VA +AD IPALKFLNLGHSMEQFSHTLASQTKLDVEGRHLLLLNHNF+ W+S+LRFPEP VLSEG+LVESWEEGVIISDFIARYS+WRELE +GCQMCG V GAYTHLRLFIQDTLLLP+KPL+DA + A KR E E AAD AE A A A EG GD AAASLAELK A +RR PLS+ELAHF+VSTGEDLYLKMLLVDNLMHADLHPGNILIH+ +NGRPVLTLVDAGMVAKL+D+ER NFIGLLE+MG GDGARAA HVLGFS+TQTC GEDA AF +EM EVFA +CRGY T V++GVVLREVLA VRKFHVRVDVNYATLLINLLCLEG+A+ALLPSYNILDRAKPLL PHSNKL+RPFFR+IYPLLL FKR +SA+FNL+K+T N APLAI G+ D K LPA+RHAPR+K P
Sbjct: 10 ARRRLFYLFTLGALCRRGDGSLETTHSFHASSSKPSSPSAWKEHEAEQHPLRRQQKEPQIRPASAVGK-CNSPSSMKSTTS-SLPSRGGAGGAASPTGAPVHVQDTEMKKLLKRGQLQATGFDKEKDHEASMDGSGDSPSRFALVRRGLYLLYLFSAAILTALLALVSERFRSPYWYRMITCAISQAGAAFIKWGQWASARPDIFPEEFCSTLAMLHSFAPTHSFAFTKQAIEEAFARPLEEVFEAFDPDPIASGSIAQVHAAVMKGRRVAVKVRHPGVAAQIDIDFRVMKKVASLADMIPALKFLNLGHSMEQFSHTLASQTKLDVEGRHLLLLNHNFRKWRSSLRFPEPLVLSEGVLVESWEEGVIISDFIARYSRWRELEAQGCQMCGQVFGAYTHLRLFIQDTLLLPIKPLVDAWKMDAARKRMEA----EKAADVQAEAAAEEAVAGRPVEG--QGD-AAASLAELKNAKNRRRAPLSVELAHFIVSTGEDLYLKMLLVDNLMHADLHPGNILIHVNRNGRPVLTLVDAGMVAKLSDVERANFIGLLESMGRGDGARAARHVLGFSLTQTCVGEDATAFEQEMWEVFALHCRGYNTDVSIGVVLREVLALVRKFHVRVDVNYATLLINLLCLEGMAAALLPSYNILDRAKPLLVPHSNKLLRPFFRRIYPLLLGFKRRGESALFNLLKKTGNVQQPHAPLAIGSGSDDSSTKDSSSFLPADRHAPRIKSP 735
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01270.1 ID=NO01G01270.1|Name=NO01G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp
ATGGTCGCGCGGAGACGCGTTTTCTACCTCTGCGTTCTCGGCACCCTGAC
CTGGCGCGGCCACGGGAGTATCCACCAGCCCCCACCGCTGCACGCCACCA
CGCAGCAACAACAGCAACAACCACAACATCAGCAACGGCAACAAACGCGA
CCGCAAATAAGACCCGTGTCCGCGGCGGGGAAGGCGTGTCCATCGTCGAC
TTCACCCTCGTCATCGCCGTCCTTGTCCCTGCCTGCCCGTGGTGGCGGGG
ACACCACCAACGGCAAGCATCTGCACGTCCAAGACACCGACATGAAGAAG
CTGATGAAGAAAGGCCAACTACAAGCGGCAAGCTTCGACAAGACTGATGA
CGTTGGCTCCTCCATGGATAGCCAGGAGATTGCTCCATCCCGCCTGGCAC
TGGTGCGCCGGGGGCTCTACTTGCTCTACCTCTTCAGCGCCGCTATCTTC
ACCGCTTTCCTGGCCTTAATTTCCGAACGCTTTCGTAACCCGTATTGGTA
CCGTATGATTACTTGTGCTATCTCAAGGGCAGGCGCGGCGTTTATTAAGT
GGGGTCAATGGGCGTCGGCACGTCCAGATATCTTCCCTGAGGAATTGTGT
ATTACCTTGGCGATGCTTCATTCGTACGCACCCAAGCATTCGTTTGCCTT
CACAAAGCAAGCGATTGAGGAGGCGTTTGGAAAGCCATTGGAAGAGACAT
TTGATGCCTTTGATCCTGAGCCTATCGCCTCGGGGAGCATTGCCCAAGTG
CATGCTGCAGTTATGAAGGGGACGAGAGTTGCCGTTAAAGTGCGTCACCC
AGGGGTAGCGGAGCAGATCGAGAAGGACTTCAGGATCATGAGGAGAGTAG
CGGAGATCGCGGATACGATCCCGGCATTGAAATTTCTGAATCTGGGGCAT
AGCATGGAGCAGTTCTCGCATACCTTGGCGAGTCAGACGAAGTTGGACGT
GGAAGGGCGGCACCTGCTGTTGTTGAACCATAATTTTAAGGGTTGGAAGT
CAACGTTGCGTTTCCCCGAGCCCTTCGTGCTGTCGGAGGGGATTTTGGTC
GAAAGCTGGGAGGAAGGGGTGATTATCTCGGATTTCATTGCGCGGTACAG
CAAGTGGAGGGAGCTGGAGGAGGAGGGGTGTCAGATGTGCGGGGTTGTGC
TTGGCGCCTACACGCACCTGAGGCTCTTCATACAAGATACACTGTTGTTG
CCCGTCAAGCCTTTGCTTGATGCCCGGAGAAAAAAGGCCAGGATCAAGCG
TGCCGAGACCCGAGAGCGTGAAGAATCCGCAGCGGACGCTGCAGCTGAGG
TGGCCGAGAACGCAGCTGCGGCTGCCGGAGGGGGAGAGGGAGGGGTGGGA
GGAGATGCAGCTGCTGCGTCGTTGGCAGAATTGAAGAAGGCGGCGGGGAA
GCGAAGGACGCCTTTGAGTATGGAGTTGGCGCATTTTGTCGTGAGCACAG
GAGAAGACTTGTATTTGAAGATGTTGTTGGTGGATAATTTGATGCATGCG
GATTTGCACCCAGGCAATATTCTGATACACCTGAAGAAGAATGGGAGGCC
CGTGTTGACGCTTGTCGATGCAGGGATGGTGGCCAAGCTGACGGACATGG
AGCGAACGAATTTTATTGGTCTGCTGGAGGCGATGGGGACTGGGGATGGA
GCCCGAGCCGCGGGCCACGTGTTGGGGTTCTCGGTCACACAGACATGCAC
GGGGGAGGACGCAGTGGCCTTCACAAAGGAGATGGAGGAGGTGTTCGCGA
GGTATTGCAGAGGCTACGGGACAGGGGTGAATATGGGGGTGGTTTTAAGG
GAAGTTTTGGCGAAAGTCCGAAAGTTCCACGTCCGGGTGGACGTAAACTA
TGCGACGCTCCTGATTAATTTGTTGTGCTTGGAAGGGCTGGCTTCAGCCT
TGCTCCCTTCTTACAACATCCTCGATCGAGCGAAGCCCTTGTTGGCCCCG
CACTCCAACAAGCTAATCCGACCCTTTTTCCGCAAGATCTATCCCTTGCT
TCTCTCCTTCAAGCGCCACACTGACAGCGCCGTATTCAACCTGATGAAGA
GAACCAGCAACGCCCCACTAGCCATTACAGATGGCACCAGCGACGAGGAT
AAGGCGCCTCCTCCTCTCCTTCCTGCCAATCGACATGCGCCTAGGATGAA
GGAACCGGCACACCACTAA back to topprotein sequence of NO01G01270.1 >NO01G01270.1-protein ID=NO01G01270.1-protein|Name=NO01G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MVARRRVFYLCVLGTLTWRGHGSIHQPPPLHATTQQQQQQPQHQQRQQTR
PQIRPVSAAGKACPSSTSPSSSPSLSLPARGGGDTTNGKHLHVQDTDMKK
LMKKGQLQAASFDKTDDVGSSMDSQEIAPSRLALVRRGLYLLYLFSAAIF
TAFLALISERFRNPYWYRMITCAISRAGAAFIKWGQWASARPDIFPEELC
ITLAMLHSYAPKHSFAFTKQAIEEAFGKPLEETFDAFDPEPIASGSIAQV
HAAVMKGTRVAVKVRHPGVAEQIEKDFRIMRRVAEIADTIPALKFLNLGH
SMEQFSHTLASQTKLDVEGRHLLLLNHNFKGWKSTLRFPEPFVLSEGILV
ESWEEGVIISDFIARYSKWRELEEEGCQMCGVVLGAYTHLRLFIQDTLLL
PVKPLLDARRKKARIKRAETREREESAADAAAEVAENAAAAAGGGEGGVG
GDAAAASLAELKKAAGKRRTPLSMELAHFVVSTGEDLYLKMLLVDNLMHA
DLHPGNILIHLKKNGRPVLTLVDAGMVAKLTDMERTNFIGLLEAMGTGDG
ARAAGHVLGFSVTQTCTGEDAVAFTKEMEEVFARYCRGYGTGVNMGVVLR
EVLAKVRKFHVRVDVNYATLLINLLCLEGLASALLPSYNILDRAKPLLAP
HSNKLIRPFFRKIYPLLLSFKRHTDSAVFNLMKRTSNAPLAITDGTSDED
KAPPPLLPANRHAPRMKEPAHH* back to topmRNA from alignment at chr1:322898..325066- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01270.1 ID=NO01G01270.1|Name=NO01G01270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp|location=Sequence derived from alignment at chr1:322898..325066- (Nannochloropsis oceanica)
ATGGTCGCGCGGAGACGCGTTTTCTACCTCTGCGTTCTCGGCACCCTGAC
CTGGCGCGGCCACGGGAGTATCCACCAGCCCCCACCGCTGCACGCCACCA
CGCAGCAACAACAGCAACAACCACAACATCAGCAACGGCAACAAACGCGA
CCGCAAATAAGACCCGTGTCCGCGGCGGGGAAGGCGTGTCCATCGTCGAC
TTCACCCTCGTCATCGCCGTCCTTGTCCCTGCCTGCCCGTGGTGGCGGGG
ACACCACCAACGGCAAGCATCTGCACGTCCAAGACACCGACATGAAGAAG
CTGATGAAGAAAGGCCAACTACAAGCGGCAAGCTTCGACAAGACTGATGA
CGTTGGCTCCTCCATGGATAGCCAGGAGATTGCTCCATCCCGCCTGGCAC
TGGTGCGCCGGGGGCTCTACTTGCTCTACCTCTTCAGCGCCGCTATCTTC
ACCGCTTTCCTGGCCTTAATTTCCGAACGCTTTCGTAACCCGTATTGGTA
CCGTATGATTACTTGTGCTATCTCAAGGGCAGGCGCGGCGTTTATTAAGT
GGGGTCAATGGGCGTCGGCACGTCCAGATATCTTCCCTGAGGAATTGTGT
ATTACCTTGGCGATGCTTCATTCGTACGCACCCAAGCATTCGTTTGCCTT
CACAAAGCAAGCGATTGAGGAGGCGTTTGGAAAGCCATTGGAAGAGACAT
TTGATGCCTTTGATCCTGAGCCTATCGCCTCGGGGAGCATTGCCCAAGTG
CATGCTGCAGTTATGAAGGGGACGAGAGTTGCCGTTAAAGTGCGTCACCC
AGGGGTAGCGGAGCAGATCGAGAAGGACTTCAGGATCATGAGGAGAGTAG
CGGAGATCGCGGATACGATCCCGGCATTGAAATTTCTGAATCTGGGGCAT
AGCATGGAGCAGTTCTCGCATACCTTGGCGAGTCAGACGAAGTTGGACGT
GGAAGGGCGGCACCTGCTGTTGTTGAACCATAATTTTAAGGGTTGGAAGT
CAACGTTGCGTTTCCCCGAGCCCTTCGTGCTGTCGGAGGGGATTTTGGTC
GAAAGCTGGGAGGAAGGGGTGATTATCTCGGATTTCATTGCGCGGTACAG
CAAGTGGAGGGAGCTGGAGGAGGAGGGGTGTCAGATGTGCGGGGTTGTGC
TTGGCGCCTACACGCACCTGAGGCTCTTCATACAAGATACACTGTTGTTG
CCCGTCAAGCCTTTGCTTGATGCCCGGAGAAAAAAGGCCAGGATCAAGCG
TGCCGAGACCCGAGAGCGTGAAGAATCCGCAGCGGACGCTGCAGCTGAGG
TGGCCGAGAACGCAGCTGCGGCTGCCGGAGGGGGAGAGGGAGGGGTGGGA
GGAGATGCAGCTGCTGCGTCGTTGGCAGAATTGAAGAAGGCGGCGGGGAA
GCGAAGGACGCCTTTGAGTATGGAGTTGGCGCATTTTGTCGTGAGCACAG
GAGAAGACTTGTATTTGAAGATGTTGTTGGTGGATAATTTGATGCATGCG
GATTTGCACCCAGGCAATATTCTGATACACCTGAAGAAGAATGGGAGGCC
CGTGTTGACGCTTGTCGATGCAGGGATGGTGGCCAAGCTGACGGACATGG
AGCGAACGAATTTTATTGGTCTGCTGGAGGCGATGGGGACTGGGGATGGA
GCCCGAGCCGCGGGCCACGTGTTGGGGTTCTCGGTCACACAGACATGCAC
GGGGGAGGACGCAGTGGCCTTCACAAAGGAGATGGAGGAGGTGTTCGCGA
GGTATTGCAGAGGCTACGGGACAGGGGTGAATATGGGGGTGGTTTTAAGG
GAAGTTTTGGCGAAAGTCCGAAAGTTCCACGTCCGGGTGGACGTAAACTA
TGCGACGCTCCTGATTAATTTGTTGTGCTTGGAAGGGCTGGCTTCAGCCT
TGCTCCCTTCTTACAACATCCTCGATCGAGCGAAGCCCTTGTTGGCCCCG
CACTCCAACAAGCTAATCCGACCCTTTTTCCGCAAGATCTATCCCTTGCT
TCTCTCCTTCAAGCGCCACACTGACAGCGCCGTATTCAACCTGATGAAGA
GAACCAGCAACGCCCCACTAGCCATTACAGATGGCACCAGCGACGAGGAT
AAGGCGCCTCCTCCTCTCCTTCCTGCCAATCGACATGCGCCTAGGATGAA
GGAACCGGCACACCACTAA back to topCoding sequence (CDS) from alignment at chr1:322898..325066- >NO01G01270.1 ID=NO01G01270.1|Name=NO01G01270.1|organism=Nannochloropsis oceanica|type=CDS|length=2169bp|location=Sequence derived from alignment at chr1:322898..325066- (Nannochloropsis oceanica)
ATGGTCGCGCGGAGACGCGTTTTCTACCTCTGCGTTCTCGGCACCCTGAC
CTGGCGCGGCCACGGGAGTATCCACCAGCCCCCACCGCTGCACGCCACCA
CGCAGCAACAACAGCAACAACCACAACATCAGCAACGGCAACAAACGCGA
CCGCAAATAAGACCCGTGTCCGCGGCGGGGAAGGCGTGTCCATCGTCGAC
TTCACCCTCGTCATCGCCGTCCTTGTCCCTGCCTGCCCGTGGTGGCGGGG
ACACCACCAACGGCAAGCATCTGCACGTCCAAGACACCGACATGAAGAAG
CTGATGAAGAAAGGCCAACTACAAGCGGCAAGCTTCGACAAGACTGATGA
CGTTGGCTCCTCCATGGATAGCCAGGAGATTGCTCCATCCCGCCTGGCAC
TGGTGCGCCGGGGGCTCTACTTGCTCTACCTCTTCAGCGCCGCTATCTTC
ACCGCTTTCCTGGCCTTAATTTCCGAACGCTTTCGTAACCCGTATTGGTA
CCGTATGATTACTTGTGCTATCTCAAGGGCAGGCGCGGCGTTTATTAAGT
GGGGTCAATGGGCGTCGGCACGTCCAGATATCTTCCCTGAGGAATTGTGT
ATTACCTTGGCGATGCTTCATTCGTACGCACCCAAGCATTCGTTTGCCTT
CACAAAGCAAGCGATTGAGGAGGCGTTTGGAAAGCCATTGGAAGAGACAT
TTGATGCCTTTGATCCTGAGCCTATCGCCTCGGGGAGCATTGCCCAAGTG
CATGCTGCAGTTATGAAGGGGACGAGAGTTGCCGTTAAAGTGCGTCACCC
AGGGGTAGCGGAGCAGATCGAGAAGGACTTCAGGATCATGAGGAGAGTAG
CGGAGATCGCGGATACGATCCCGGCATTGAAATTTCTGAATCTGGGGCAT
AGCATGGAGCAGTTCTCGCATACCTTGGCGAGTCAGACGAAGTTGGACGT
GGAAGGGCGGCACCTGCTGTTGTTGAACCATAATTTTAAGGGTTGGAAGT
CAACGTTGCGTTTCCCCGAGCCCTTCGTGCTGTCGGAGGGGATTTTGGTC
GAAAGCTGGGAGGAAGGGGTGATTATCTCGGATTTCATTGCGCGGTACAG
CAAGTGGAGGGAGCTGGAGGAGGAGGGGTGTCAGATGTGCGGGGTTGTGC
TTGGCGCCTACACGCACCTGAGGCTCTTCATACAAGATACACTGTTGTTG
CCCGTCAAGCCTTTGCTTGATGCCCGGAGAAAAAAGGCCAGGATCAAGCG
TGCCGAGACCCGAGAGCGTGAAGAATCCGCAGCGGACGCTGCAGCTGAGG
TGGCCGAGAACGCAGCTGCGGCTGCCGGAGGGGGAGAGGGAGGGGTGGGA
GGAGATGCAGCTGCTGCGTCGTTGGCAGAATTGAAGAAGGCGGCGGGGAA
GCGAAGGACGCCTTTGAGTATGGAGTTGGCGCATTTTGTCGTGAGCACAG
GAGAAGACTTGTATTTGAAGATGTTGTTGGTGGATAATTTGATGCATGCG
GATTTGCACCCAGGCAATATTCTGATACACCTGAAGAAGAATGGGAGGCC
CGTGTTGACGCTTGTCGATGCAGGGATGGTGGCCAAGCTGACGGACATGG
AGCGAACGAATTTTATTGGTCTGCTGGAGGCGATGGGGACTGGGGATGGA
GCCCGAGCCGCGGGCCACGTGTTGGGGTTCTCGGTCACACAGACATGCAC
GGGGGAGGACGCAGTGGCCTTCACAAAGGAGATGGAGGAGGTGTTCGCGA
GGTATTGCAGAGGCTACGGGACAGGGGTGAATATGGGGGTGGTTTTAAGG
GAAGTTTTGGCGAAAGTCCGAAAGTTCCACGTCCGGGTGGACGTAAACTA
TGCGACGCTCCTGATTAATTTGTTGTGCTTGGAAGGGCTGGCTTCAGCCT
TGCTCCCTTCTTACAACATCCTCGATCGAGCGAAGCCCTTGTTGGCCCCG
CACTCCAACAAGCTAATCCGACCCTTTTTCCGCAAGATCTATCCCTTGCT
TCTCTCCTTCAAGCGCCACACTGACAGCGCCGTATTCAACCTGATGAAGA
GAACCAGCAACGCCCCACTAGCCATTACAGATGGCACCAGCGACGAGGAT
AAGGCGCCTCCTCCTCTCCTTCCTGCCAATCGACATGCGCCTAGGATGAA
GGAACCGGCACACCACTAA back to top
|