NO01G01250.1, NO01G01250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01250.1
Unique NameNO01G01250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length957
Alignment locationchr1:320929..321885 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:320929..321885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G01250.1 vs.
Match: EWM29075.1 (hypothetical protein Naga_100024g6 [Nannochloropsis gaditana])

HSP 1 Score: 243.0 bits (619), Expect = 1.200e-60
Identity = 139/275 (50.55%), Postives = 170/275 (61.82%), Query Frame = 0 
Query:   11 AMCLRNLASAP-LVRREALLPAACLAGDLLLPRVLIPL-------STTTPPLLLCLGLDNATHAFLALLIWWAVLAPPLPWPPPPPRPPPLPLPLYHRS---LQTPRYQFGNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRPPGHCLTSLFALTALCWASIQYGNG--SGNRRDRLHHSFCCCRCSSSCCGWWPRKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMIVMLPLIVRRAL-RVGEEEERGE 272
            AM L    +AP L+ REALL  AC+AGD L P +L  L        + +PPL+L L LDN THA LA ++WW VLAPP PWPP   RP PLPLPLYH     L  P +      LE+L+AF+LGSALDLDHF+AA S W L G L L  RPPGHCLTSL  LTA  W    Y  G   G     +H    C      CC      ++  R SLLF+SA LSHQLRDA+R G+WFCH+G ST+P+ F +Y+++ + LPL++RR L + G E ERGE
Sbjct:    8 AMALSMPGNAPSLLLREALLLTACVAGDTLFPSLLAYLYGSPSGTDSPSPPLILRLLLDNFTHATLASMVWWTVLAPPAPWPPAFSRPRPLPLPLYHEHRHLLPRPGHPAHKPCLEILLAFILGSALDLDHFIAARSFWGLQGVLHLSHRPPGHCLTSLLTLTACVWTLAHYIQGPQQGGTEPSVHARGTC-----GCCNQGFLLQNGQRLSLLFMSAALSHQLRDALRHGLWFCHLGFSTAPLSFHVYILLTMTLPLVIRRLLAKRGGEAERGE 277
The following BLAST results are available for this feature:
BLAST of NO01G01250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29075.11.200e-6050.55hypothetical protein Naga_100024g6 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01250NO01G01250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01250.1NO01G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01250.1.cds1NO01G01250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01250.1 ID=NO01G01250.1|Name=NO01G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=957bp
ATGTACATGACATCGCCGCTCCCATCCATTGCCATGTGCCTCCGCAACTT
GGCCTCGGCTCCCCTTGTGCGGCGAGAAGCCCTGCTCCCCGCAGCCTGCC
TAGCCGGAGACCTCTTGCTTCCCCGCGTCCTCATCCCCCTGTCGACCACC
ACGCCTCCCCTCCTCCTCTGCCTGGGACTCGACAATGCAACCCATGCATT
CCTCGCCTTGCTCATATGGTGGGCAGTTCTTGCCCCCCCCCTCCCCTGGC
CACCCCCACCACCGCGCCCACCCCCGTTGCCACTTCCCCTCTACCATCGT
AGCCTTCAGACCCCTAGATATCAGTTCGGCAACGAGCGCCTCGAGTTACT
TGTGGCTTTTGTGTTAGGCAGTGCGCTGGATCTTGATCACTTCCTTGCCG
CGGGTTCGTTGTGGAATTTGCACGGTGCCCTTCGCTTGAAAGATCGTCCT
CCAGGGCATTGTCTTACTTCTCTTTTTGCATTGACAGCCCTTTGTTGGGC
TTCAATTCAGTATGGGAATGGCAGCGGCAACCGAAGGGATAGACTGCACC
ATTCGTTCTGTTGCTGCCGCTGTTCGTCTTCATGCTGTGGGTGGTGGCCA
CGCAAAGAAGACAGTGTGAGATATTCTCTCTTGTTTTTAAGCGCCACACT
ATCACACCAGCTAAGGGATGCGATCAGGCGCGGTATTTGGTTTTGTCATA
TCGGTGTATCCACTTCTCCGATCCCTTTTGGTATCTATTTGATCATGATC
GTGATGTTGCCGTTGATTGTCAGGAGGGCGTTGCGGGTTGGGGAGGAGGA
GGAAAGGGGGGAAGAAGGAGGAGGAAGGGGGGTGACAACGTACATGGCTG
TGGCAGAAGAGGAGCAAGATGAGGCAGGCTTTGAGATGGCACGGTGGCAA
CAATAGAGCATGAGAAACACAGACATCTAAGTATGTATGACAGAATGTAG
CAGCTAA
back to top

protein sequence of NO01G01250.1

>NO01G01250.1-protein ID=NO01G01250.1-protein|Name=NO01G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MYMTSPLPSIAMCLRNLASAPLVRREALLPAACLAGDLLLPRVLIPLSTT
TPPLLLCLGLDNATHAFLALLIWWAVLAPPLPWPPPPPRPPPLPLPLYHR
SLQTPRYQFGNERLELLVAFVLGSALDLDHFLAAGSLWNLHGALRLKDRP
PGHCLTSLFALTALCWASIQYGNGSGNRRDRLHHSFCCCRCSSSCCGWWP
RKEDSVRYSLLFLSATLSHQLRDAIRRGIWFCHIGVSTSPIPFGIYLIMI
VMLPLIVRRALRVGEEEERGEEGGGRGVTTYMAVAEEEQDEAGFEMARWQ
Q*
back to top

mRNA from alignment at chr1:320929..321885+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01250.1 ID=NO01G01250.1|Name=NO01G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=957bp|location=Sequence derived from alignment at chr1:320929..321885+ (Nannochloropsis oceanica)
ATGTACATGACATCGCCGCTCCCATCCATTGCCATGTGCCTCCGCAACTT
GGCCTCGGCTCCCCTTGTGCGGCGAGAAGCCCTGCTCCCCGCAGCCTGCC
TAGCCGGAGACCTCTTGCTTCCCCGCGTCCTCATCCCCCTGTCGACCACC
ACGCCTCCCCTCCTCCTCTGCCTGGGACTCGACAATGCAACCCATGCATT
CCTCGCCTTGCTCATATGGTGGGCAGTTCTTGCCCCCCCCCTCCCCTGGC
CACCCCCACCACCGCGCCCACCCCCGTTGCCACTTCCCCTCTACCATCGT
AGCCTTCAGACCCCTAGATATCAGTTCGGCAACGAGCGCCTCGAGTTACT
TGTGGCTTTTGTGTTAGGCAGTGCGCTGGATCTTGATCACTTCCTTGCCG
CGGGTTCGTTGTGGAATTTGCACGGTGCCCTTCGCTTGAAAGATCGTCCT
CCAGGGCATTGTCTTACTTCTCTTTTTGCATTGACAGCCCTTTGTTGGGC
TTCAATTCAGTATGGGAATGGCAGCGGCAACCGAAGGGATAGACTGCACC
ATTCGTTCTGTTGCTGCCGCTGTTCGTCTTCATGCTGTGGGTGGTGGCCA
CGCAAAGAAGACAGTGTGAGATATTCTCTCTTGTTTTTAAGCGCCACACT
ATCACACCAGCTAAGGGATGCGATCAGGCGCGGTATTTGGTTTTGTCATA
TCGGTGTATCCACTTCTCCGATCCCTTTTGGTATCTATTTGATCATGATC
GTGATGTTGCCGTTGATTGTCAGGAGGGCGTTGCGGGTTGGGGAGGAGGA
GGAAAGGGGGGAAGAAGGAGGAGGAAGGGGGGTGACAACGTACATGGCTG
TGGCAGAAGAGGAGCAAGATGAGGCAGGCTTTGAGATGGCACGGTGGCAA
CAATAGAGCATGAGAAACACAGACATCTAAGTATGTATGACAGAATGTAG
CAGCTAA
back to top

Coding sequence (CDS) from alignment at chr1:320929..321885+

>NO01G01250.1 ID=NO01G01250.1|Name=NO01G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at chr1:320929..321885+ (Nannochloropsis oceanica)
ATGTACATGACATCGCCGCTCCCATCCATTGCCATGTGCCTCCGCAACTT
GGCCTCGGCTCCCCTTGTGCGGCGAGAAGCCCTGCTCCCCGCAGCCTGCC
TAGCCGGAGACCTCTTGCTTCCCCGCGTCCTCATCCCCCTGTCGACCACC
ACGCCTCCCCTCCTCCTCTGCCTGGGACTCGACAATGCAACCCATGCATT
CCTCGCCTTGCTCATATGGTGGGCAGTTCTTGCCCCCCCCCTCCCCTGGC
CACCCCCACCACCGCGCCCACCCCCGTTGCCACTTCCCCTCTACCATCGT
AGCCTTCAGACCCCTAGATATCAGTTCGGCAACGAGCGCCTCGAGTTACT
TGTGGCTTTTGTGTTAGGCAGTGCGCTGGATCTTGATCACTTCCTTGCCG
CGGGTTCGTTGTGGAATTTGCACGGTGCCCTTCGCTTGAAAGATCGTCCT
CCAGGGCATTGTCTTACTTCTCTTTTTGCATTGACAGCCCTTTGTTGGGC
TTCAATTCAGTATGGGAATGGCAGCGGCAACCGAAGGGATAGACTGCACC
ATTCGTTCTGTTGCTGCCGCTGTTCGTCTTCATGCTGTGGGTGGTGGCCA
CGCAAAGAAGACAGTGTGAGATATTCTCTCTTGTTTTTAAGCGCCACACT
ATCACACCAGCTAAGGGATGCGATCAGGCGCGGTATTTGGTTTTGTCATA
TCGGTGTATCCACTTCTCCGATCCCTTTTGGTATCTATTTGATCATGATC
GTGATGTTGCCGTTGATTGTCAGGAGGGCGTTGCGGGTTGGGGAGGAGGA
GGAAAGGGGGGAAGAAGGAGGAGGAAGGGGGGTGACAACGTACATGGCTG
TGGCAGAAGAGGAGCAAGATGAGGCAGGCTTTGAGATGGCACGGTGGCAA
CAATAG
back to top
Synonyms
Publications