NO01G01240.1, NO01G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01240.1
Unique NameNO01G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length966
Alignment locationchr1:318767..320247 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:318767..320247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01240.1 vs.
Match: EWM29063.1 (carbonic anhydrase [Nannochloropsis gaditana])

HSP 1 Score: 447.6 bits (1150), Expect = 3.300e-122
Identity = 236/320 (73.75%), Postives = 262/320 (81.88%), Query Frame = 0 
Query:    1 MLTSIRSHLDDQEVKIQEQLFRFQGIKRAIDRICKNDEAYMDSPDIVKAQTTLEDRPELERKGETAAEALRLLKVGNAAFLRDEVVPVHRSDRHIGLHFAQKPHAIIIACSDSRVPPEMIFNCAFGELFVIRLAGNTVDALARASLLYAVQHLQSPLVVVLGHEKCGAVTAALQPEEELADAPGDIKTLVRNIKRGIECELIDPSAHIFGDERLLCAIVCNVHYVARTLSEHPDIRPFIDRRKLSVVGAYYAFSGVVSFFDDQDEGGRMERGRVFGGVEGNGSLCLSCSGTLSGNSSPMAGGGSKGSSPPPSVQDGVNKS 321
            +L  IR HLDDQE KI EQL RFQ IK+A++RICKND+AYM SPDIVKAQTTLED P LERKG TAAEAL LLK GNAAFLRDEV     SDRHIGLHFAQKPHAIIIACSDSRVPPEMIFNCAFGELFVIRLAGNT+DALARASLLYAVQHL SPLVVVLGHEKCGAVTAALQP E LA+AP DIKTLV+ I+ GIEC L++P      DERLLCAIVCNVH VARTLSEHPDIRPFI+++ LSVVGAYYAF+GVVSFFDD ++G    +  V   V G  SLC+SCSGT+  +SSP A    K +S   SV +G++K+
Sbjct:   20 VLERIRHHLDDQEHKIHEQLNRFQLIKKAVERICKNDDAYMQSPDIVKAQTTLEDSP-LERKGNTAAEALELLKAGNAAFLRDEVPAKQCSDRHIGLHFAQKPHAIIIACSDSRVPPEMIFNCAFGELFVIRLAGNTIDALARASLLYAVQHLHSPLVVVLGHEKCGAVTAALQPPEALAEAPRDIKTLVKKIQSGIECALLEPGLEDVDDERLLCAIVCNVHSVARTLSEHPDIRPFIEQKALSVVGAYYAFNGVVSFFDDGEDGNATGK-EVGSTVNGQASLCMSCSGTIHRSSSPTADPSQKVNS-RLSVSEGLSKN 336
The following BLAST results are available for this feature:
BLAST of NO01G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29063.13.300e-12273.75carbonic anhydrase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01240NO01G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01240.1NO01G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01240.1.cds1NO01G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01240.1.cds2NO01G01240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01240.1.cds3NO01G01240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01240.1.cds4NO01G01240.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01240.1.cds5NO01G01240.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01240.1 ID=NO01G01240.1|Name=NO01G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGCTCACCAGCATCCGCAGCCACCTAGACGACCAAGAGGTCAAGATCCA
GGAACAATTATTTCGCTTCCAGGGCATTAAGAGGGCCATTGACCGCATTT
GCAAGAATGACGAGGCCTACATGGACTCCCCCGATATTGTCAAGGCACAG
ACCACGCTCGAAGATCGCCCGGAGCTGGAAAGGAAAGGAGAGACTGCTGC
TGAAGCCTTGCGCCTGCTCAAAGTGGGCAACGCTGCCTTTTTGCGCGATG
AGGTTGTGCCTGTCCACCGCTCTGACAGACATATTGGCCTACATTTTGCC
CAGAAACCCCACGCCATAATTATTGCTTGTTCCGACTCTCGGGTCCCGCC
GGAGATGATCTTTAATTGCGCGTTTGGTGAACTCTTCGTCATCCGCCTTG
CCGGCAACACCGTCGATGCACTCGCTCGCGCCAGCCTCCTTTACGCGGTG
CAACACCTCCAATCTCCCCTGGTCGTTGTTCTGGGCCACGAAAAGTGCGG
CGCCGTCACAGCCGCCTTGCAGCCGGAAGAGGAGCTGGCGGATGCTCCCG
GGGACATTAAGACCTTGGTGCGAAACATCAAAAGGGGCATAGAGTGCGAA
TTGATTGACCCGAGCGCCCACATTTTCGGCGATGAAAGACTGTTGTGCGC
GATTGTCTGCAACGTGCATTACGTGGCCCGCACCCTGTCGGAACACCCCG
ATATCCGCCCATTTATTGACCGAAGGAAACTGTCCGTCGTGGGCGCCTAC
TACGCTTTTAGTGGGGTGGTGTCGTTCTTTGACGACCAGGATGAGGGAGG
AAGGATGGAGAGAGGGCGGGTGTTTGGGGGTGTGGAGGGAAACGGATCCT
TGTGCTTAAGTTGTTCCGGAACTTTGTCCGGAAACTCGAGTCCGATGGCG
GGGGGAGGGAGCAAGGGATCCAGTCCGCCTCCGAGCGTGCAGGATGGGGT
TAATAAAAGCGTCTAG
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protein sequence of NO01G01240.1

>NO01G01240.1-protein ID=NO01G01240.1-protein|Name=NO01G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MLTSIRSHLDDQEVKIQEQLFRFQGIKRAIDRICKNDEAYMDSPDIVKAQ
TTLEDRPELERKGETAAEALRLLKVGNAAFLRDEVVPVHRSDRHIGLHFA
QKPHAIIIACSDSRVPPEMIFNCAFGELFVIRLAGNTVDALARASLLYAV
QHLQSPLVVVLGHEKCGAVTAALQPEEELADAPGDIKTLVRNIKRGIECE
LIDPSAHIFGDERLLCAIVCNVHYVARTLSEHPDIRPFIDRRKLSVVGAY
YAFSGVVSFFDDQDEGGRMERGRVFGGVEGNGSLCLSCSGTLSGNSSPMA
GGGSKGSSPPPSVQDGVNKSV*
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mRNA from alignment at chr1:318767..320247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01240.1 ID=NO01G01240.1|Name=NO01G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at chr1:318767..320247- (Nannochloropsis oceanica)
ATGCTCACCAGCATCCGCAGCCACCTAGACGACCAAGAGGTCAAGATCCA
GGAACAATTATTTCGCTTCCAGGGCATTAAGAGGTACGTAGATAGGGGGA
GAGGGGAAGAGACATATGATGCGCTGGCGGGGTGCAAGCTGATCGATGGA
ATCTCCGTTCTTATCACATACATCATCACAGGGCCATTGACCGCATTTGC
AAGAATGACGAGGCCTACATGGACTCCCCCGATATTGTCAAGGCACAGAC
CACGCTCGAAGATCGCCCGGAGCTGGAAAGGAAAGGAGAGACTGTACGTA
CATATGGGACGTGGAACATACAACAGATCCCCGACCTCCCCGCCCTGTCT
CACACCCATCCCCCCACCCCCTTCCTTTCCCACTTCTATAGGCTGCTGAA
GCCTTGCGCCTGCTCAAAGTGGGCAACGCTGCCTTTTTGCGCGATGAGGT
TGTGCCTGTCCACCGCTCTGACAGACATATTGGCCTACATTTTGCCCAGA
AACCCCACGCCATAATTATTGCTTGTTCCGACTCTCGGGTCCCGCCGGAG
ATGATCTTTAATTGCGCGTTTGGTGAACTGTAAGTTCATATGTTGATCGG
ATATTGATAGCCGGGTACTTATGTTTTTATTCGCTCCCCGCCCATTTTTC
TTTAAGCTGGCCTATCTCATCTTTTTCCTCTCCACCAATAATAACCAGCT
TCGTCATCCGCCTTGCCGGCAACACCGTCGATGCACTCGCTCGCGCCAGC
CTCCTTTACGCGGTGCAACACCTCCAATCTCCCCTGGTCGTTGTTCTGGG
CCACGAAAAGTGCGGCGCCGTCACAGCCGCCTTGCAGCCGGAAGAGGAGC
TGGCGGATGCTCCCGGGGACATTAAGACCTTGGTGCGAAACATCAAAAGT
AAGTGCCACAGTCCCTCACTCCTTCCCTCCCTTCCTCCACCGTTTCCTTC
CTCTGTTTCTCCCTCGTCTTGCCCTTTCTCCAAACCTGCCTCCCTCGTCT
GGTCTGTGACTGCGTCTGTATTTACCCCCTGGCTCCGGGGTCGGTACCCC
CGACGACTTATCCCCTTTCTCCCTCCCGCCCTCTCCCCGTTTGTCTAGGG
GGCATAGAGTGCGAATTGATTGACCCGAGCGCCCACATTTTCGGCGATGA
AAGACTGTTGTGCGCGATTGTCTGCAACGTGCATTACGTGGCCCGCACCC
TGTCGGAACACCCCGATATCCGCCCATTTATTGACCGAAGGAAACTGTCC
GTCGTGGGCGCCTACTACGCTTTTAGTGGGGTGGTGTCGTTCTTTGACGA
CCAGGATGAGGGAGGAAGGATGGAGAGAGGGCGGGTGTTTGGGGGTGTGG
AGGGAAACGGATCCTTGTGCTTAAGTTGTTCCGGAACTTTGTCCGGAAAC
TCGAGTCCGATGGCGGGGGGAGGGAGCAAGGGATCCAGTCCGCCTCCGAG
CGTGCAGGATGGGGTTAATAAAAGCGTCTAG
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Coding sequence (CDS) from alignment at chr1:318767..320247-

>NO01G01240.1 ID=NO01G01240.1|Name=NO01G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at chr1:318767..320247- (Nannochloropsis oceanica)
ATGCTCACCAGCATCCGCAGCCACCTAGACGACCAAGAGGTCAAGATCCA
GGAACAATTATTTCGCTTCCAGGGCATTAAGAGGGCCATTGACCGCATTT
GCAAGAATGACGAGGCCTACATGGACTCCCCCGATATTGTCAAGGCACAG
ACCACGCTCGAAGATCGCCCGGAGCTGGAAAGGAAAGGAGAGACTGCTGC
TGAAGCCTTGCGCCTGCTCAAAGTGGGCAACGCTGCCTTTTTGCGCGATG
AGGTTGTGCCTGTCCACCGCTCTGACAGACATATTGGCCTACATTTTGCC
CAGAAACCCCACGCCATAATTATTGCTTGTTCCGACTCTCGGGTCCCGCC
GGAGATGATCTTTAATTGCGCGTTTGGTGAACTCTTCGTCATCCGCCTTG
CCGGCAACACCGTCGATGCACTCGCTCGCGCCAGCCTCCTTTACGCGGTG
CAACACCTCCAATCTCCCCTGGTCGTTGTTCTGGGCCACGAAAAGTGCGG
CGCCGTCACAGCCGCCTTGCAGCCGGAAGAGGAGCTGGCGGATGCTCCCG
GGGACATTAAGACCTTGGTGCGAAACATCAAAAGGGGCATAGAGTGCGAA
TTGATTGACCCGAGCGCCCACATTTTCGGCGATGAAAGACTGTTGTGCGC
GATTGTCTGCAACGTGCATTACGTGGCCCGCACCCTGTCGGAACACCCCG
ATATCCGCCCATTTATTGACCGAAGGAAACTGTCCGTCGTGGGCGCCTAC
TACGCTTTTAGTGGGGTGGTGTCGTTCTTTGACGACCAGGATGAGGGAGG
AAGGATGGAGAGAGGGCGGGTGTTTGGGGGTGTGGAGGGAAACGGATCCT
TGTGCTTAAGTTGTTCCGGAACTTTGTCCGGAAACTCGAGTCCGATGGCG
GGGGGAGGGAGCAAGGGATCCAGTCCGCCTCCGAGCGTGCAGGATGGGGT
TAATAAAAGCGTCTAG
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Synonyms
Publications