NO01G01220.1, NO01G01220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01220.1
Unique NameNO01G01220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length942
Alignment locationchr1:316834..317775 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:316834..317775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G01220.1 vs.
Match: EWM29048.1 (phytanoyl- dioxygenase [Nannochloropsis gaditana])

HSP 1 Score: 484.6 bits (1246), Expect = 2.400e-133
Identity = 229/298 (76.85%), Postives = 255/298 (85.57%), Query Frame = 0 
Query:   19 GNKELQLT---DDPEVWEDYRRRFETEGYLVLEGYWSRATCAALRGRMNALIQEFDLAAHRSVFSTDEQSRTSDDYFLGSGDKIRFFWEADAFDKETGAFRQPRAASINKVGHALHDLDPIFQQITYTPQIGKLARAVGGLSVPLVAQSMYIFKQPRIGGKVGAHQDGTFLYTEPQSVVGFWWALEDCTMTNGCLWAVPGSHKGGVTRRFRRRGEEGGTEFVPAAAGGWDLEGGLPLEVKAGSLVLLHHALVHYSLENLSAASRHAFSVHVVEGGEGTSYPEDNWLQRAPEMPFQMLP 314
            G+++L+L    +D ++WE YRRRFE +GYLVLEGYWS+ATC ALR RM+ L+  FDLAAH SVFSTDEQ+RTSD YFL SGDKI +FWE  A DK TGAFRQPRA SINKVGHALHDLDP+FQ++TYTPQIG+LARAVGGL VPLVAQSMYIFKQPRIGGKVGAHQDGTFLYTEPQSVVGFWWALEDCT  NGCLWAVPGSH+ GV+RRFRRR +  GTEF P  A  WDL GG+PLEVKAG+LVLLHHALVHYSLEN SAASRHA+S+HVVEG   + YP+DNWLQR   MPFQ LP
Sbjct:   10 GSEDLRLPGIEEDRDLWEAYRRRFEEDGYLVLEGYWSKATCTALRERMDHLVAGFDLAAHDSVFSTDEQNRTSDTYFLESGDKIHYFWEEGAIDKATGAFRQPRATSINKVGHALHDLDPLFQKVTYTPQIGQLARAVGGLHVPLVAQSMYIFKQPRIGGKVGAHQDGTFLYTEPQSVVGFWWALEDCTQKNGCLWAVPGSHRQGVSRRFRRRNDNKGTEFYPPEAVEWDLSGGIPLEVKAGALVLLHHALVHYSLENASAASRHAYSIHVVEGDGSSLYPQDNWLQRGSTMPFQPLP 307
The following BLAST results are available for this feature:
BLAST of NO01G01220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29048.12.400e-13376.85phytanoyl- dioxygenase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01220NO01G01220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01220.1NO01G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01220.1.cds1NO01G01220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01220.1 ID=NO01G01220.1|Name=NO01G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=942bp
ATGACGACCACCAGCACTACCGCCATCGCACCACCAACACTTGCACTCGA
CAATGGCAACAAGGAGCTCCAACTCACGGATGACCCCGAGGTGTGGGAGG
ACTATCGCAGGCGCTTCGAGACGGAGGGATACCTCGTCTTGGAAGGATAC
TGGTCCCGGGCAACGTGCGCAGCACTCCGTGGCCGAATGAACGCCTTGAT
TCAAGAGTTTGACCTGGCCGCACACCGCTCCGTCTTCTCCACGGACGAGC
AAAGCCGCACTTCCGACGATTACTTCCTCGGGAGTGGCGACAAGATTCGT
TTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACGGGTGCATTCCGACA
ACCCCGGGCCGCCAGCATCAATAAAGTTGGACATGCATTGCATGATCTCG
ACCCCATTTTCCAGCAAATAACCTACACTCCTCAAATCGGCAAGTTGGCT
CGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCCCAAAGCATGTATAT
TTTCAAGCAGCCGAGGATAGGGGGGAAGGTGGGGGCGCACCAAGACGGCA
CCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGTTTTGGTGGGCCTTG
GAAGACTGCACGATGACAAATGGATGCTTGTGGGCAGTGCCGGGATCACA
TAAAGGAGGGGTTACGAGGCGGTTTCGTCGGCGAGGGGAGGAGGGAGGAA
CGGAATTTGTGCCGGCTGCGGCGGGTGGATGGGATTTAGAGGGAGGGTTG
CCGTTGGAGGTAAAGGCGGGGAGTTTGGTATTGTTGCATCATGCGTTGGT
TCACTATAGTCTCGAGAATTTGTCGGCGGCCTCACGGCATGCATTTAGTG
TACATGTGGTGGAGGGGGGGGAAGGGACTTCCTACCCGGAGGATAACTGG
CTGCAACGTGCCCCCGAAATGCCTTTTCAAATGTTGCCTTGA
back to top

protein sequence of NO01G01220.1

>NO01G01220.1-protein ID=NO01G01220.1-protein|Name=NO01G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MTTTSTTAIAPPTLALDNGNKELQLTDDPEVWEDYRRRFETEGYLVLEGY
WSRATCAALRGRMNALIQEFDLAAHRSVFSTDEQSRTSDDYFLGSGDKIR
FFWEADAFDKETGAFRQPRAASINKVGHALHDLDPIFQQITYTPQIGKLA
RAVGGLSVPLVAQSMYIFKQPRIGGKVGAHQDGTFLYTEPQSVVGFWWAL
EDCTMTNGCLWAVPGSHKGGVTRRFRRRGEEGGTEFVPAAAGGWDLEGGL
PLEVKAGSLVLLHHALVHYSLENLSAASRHAFSVHVVEGGEGTSYPEDNW
LQRAPEMPFQMLP*
back to top

mRNA from alignment at chr1:316834..317775+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01220.1 ID=NO01G01220.1|Name=NO01G01220.1|organism=Nannochloropsis oceanica|type=mRNA|length=942bp|location=Sequence derived from alignment at chr1:316834..317775+ (Nannochloropsis oceanica)
ATGACGACCACCAGCACTACCGCCATCGCACCACCAACACTTGCACTCGA
CAATGGCAACAAGGAGCTCCAACTCACGGATGACCCCGAGGTGTGGGAGG
ACTATCGCAGGCGCTTCGAGACGGAGGGATACCTCGTCTTGGAAGGATAC
TGGTCCCGGGCAACGTGCGCAGCACTCCGTGGCCGAATGAACGCCTTGAT
TCAAGAGTTTGACCTGGCCGCACACCGCTCCGTCTTCTCCACGGACGAGC
AAAGCCGCACTTCCGACGATTACTTCCTCGGGAGTGGCGACAAGATTCGT
TTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACGGGTGCATTCCGACA
ACCCCGGGCCGCCAGCATCAATAAAGTTGGACATGCATTGCATGATCTCG
ACCCCATTTTCCAGCAAATAACCTACACTCCTCAAATCGGCAAGTTGGCT
CGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCCCAAAGCATGTATAT
TTTCAAGCAGCCGAGGATAGGGGGGAAGGTGGGGGCGCACCAAGACGGCA
CCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGTTTTGGTGGGCCTTG
GAAGACTGCACGATGACAAATGGATGCTTGTGGGCAGTGCCGGGATCACA
TAAAGGAGGGGTTACGAGGCGGTTTCGTCGGCGAGGGGAGGAGGGAGGAA
CGGAATTTGTGCCGGCTGCGGCGGGTGGATGGGATTTAGAGGGAGGGTTG
CCGTTGGAGGTAAAGGCGGGGAGTTTGGTATTGTTGCATCATGCGTTGGT
TCACTATAGTCTCGAGAATTTGTCGGCGGCCTCACGGCATGCATTTAGTG
TACATGTGGTGGAGGGGGGGGAAGGGACTTCCTACCCGGAGGATAACTGG
CTGCAACGTGCCCCCGAAATGCCTTTTCAAATGTTGCCTTGA
back to top

Coding sequence (CDS) from alignment at chr1:316834..317775+

>NO01G01220.1 ID=NO01G01220.1|Name=NO01G01220.1|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at chr1:316834..317775+ (Nannochloropsis oceanica)
ATGACGACCACCAGCACTACCGCCATCGCACCACCAACACTTGCACTCGA
CAATGGCAACAAGGAGCTCCAACTCACGGATGACCCCGAGGTGTGGGAGG
ACTATCGCAGGCGCTTCGAGACGGAGGGATACCTCGTCTTGGAAGGATAC
TGGTCCCGGGCAACGTGCGCAGCACTCCGTGGCCGAATGAACGCCTTGAT
TCAAGAGTTTGACCTGGCCGCACACCGCTCCGTCTTCTCCACGGACGAGC
AAAGCCGCACTTCCGACGATTACTTCCTCGGGAGTGGCGACAAGATTCGT
TTCTTCTGGGAGGCAGATGCCTTTGACAAGGAGACGGGTGCATTCCGACA
ACCCCGGGCCGCCAGCATCAATAAAGTTGGACATGCATTGCATGATCTCG
ACCCCATTTTCCAGCAAATAACCTACACTCCTCAAATCGGCAAGTTGGCT
CGAGCTGTGGGGGGCCTGAGCGTCCCCTTGGTCGCCCAAAGCATGTATAT
TTTCAAGCAGCCGAGGATAGGGGGGAAGGTGGGGGCGCACCAAGACGGCA
CCTTTTTGTACACGGAGCCTCAGTCCGTGGTGGGGTTTTGGTGGGCCTTG
GAAGACTGCACGATGACAAATGGATGCTTGTGGGCAGTGCCGGGATCACA
TAAAGGAGGGGTTACGAGGCGGTTTCGTCGGCGAGGGGAGGAGGGAGGAA
CGGAATTTGTGCCGGCTGCGGCGGGTGGATGGGATTTAGAGGGAGGGTTG
CCGTTGGAGGTAAAGGCGGGGAGTTTGGTATTGTTGCATCATGCGTTGGT
TCACTATAGTCTCGAGAATTTGTCGGCGGCCTCACGGCATGCATTTAGTG
TACATGTGGTGGAGGGGGGGGAAGGGACTTCCTACCCGGAGGATAACTGG
CTGCAACGTGCCCCCGAAATGCCTTTTCAAATGTTGCCTTGA
back to top
Synonyms
Publications