NO01G01210.1, NO01G01210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01210.1
Unique NameNO01G01210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1314
Alignment locationchr1:315224..316537 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:315224..316537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01210.1 vs.
Match: EWM29061.1 (Cyclin C/H/T/L [Nannochloropsis gaditana])

HSP 1 Score: 393.3 bits (1009), Expect = 1.000e-105
Identity = 242/453 (53.42%), Postives = 295/453 (65.12%), Query Frame = 0 
Query:    1 MSSPLYSGSPGRQSHRDRDRGHRYSSGG-------GKHSRERSRERSRERGNTGTTSGSDSKHQSSSLRRRSKTKDGHDSFTGGRSSLGGSSSSSSSSLSSHSRPPIHESSNSGGGGSNSNYRRTHQPPPLSSETRQAYFIKSCAFLVALSKELHLGKVATHTALVFFHRFFKHQSFQAHDRLLVATACIYLAAKTEERNNVKLSIIVVQYLKKIDVLPDEVDPLEYNRNAVAREAVPAWKFRVISYERCLLYTIAFDLTVTHPFRTLQDMMKTVRDVMAEEGRKGGPAAIGMGAGSNITSSLTF--SQQQQQQQPFDHRTFFSQACKFLNDSFCNPSLIDVEPSYSAALALYLTTLLYGIKPPTNKGTWLEIFHVQDEARFLSDCSLAIQMYGEENSNFQILNVVDVPEPSSVPLAVTRSGVHSRELEISSLYG--------GGGLRRLSPL 437
            M S  YSGS  R SHR+ +RGHR+           G   R+R+RERSRER +T     S S     S RRRS   +G      GR +   S  SSS         P+     +    S S   R  QPPPL  +T  A+ + SCAF+V + K LHLGKVATHTALVFFHRFFKHQSF++HDRLLVA ACIYLAAK EERNNVKLS+IVV YLK++ VLP EVD  +YNRNAVARE VP WK RVI+YERCLLYT+AFDLTV HPF+ LQD+MKTVRDVMAEEG+K G +    G      +SL F  +         DHRT F+QACKFLNDSF  P+LI+V+ SYSAALALYLT +LY IKPP  KG+WLE++H+QDE RFL DC LA++ YGEE+   + LN+  VP+P++V +      +     ++++LYG        GG LR L+PL
Sbjct:   13 MPSSGYSGSFARDSHREHERGHRHRERDRDRHDRDGGSGRKRARERSRERIDTHPRDNS-SVRSCLSPRRRSNGSEGDGR---GRPATHVSRVSSS---------PLPSRGGAHAKRSPSRPPRNEQPPPLPPDTHLAFCVSSCAFIVEMGKALHLGKVATHTALVFFHRFFKHQSFRSHDRLLVAAACIYLAAKVEERNNVKLSLIVVAYLKRLGVLPPEVDAQDYNRNAVAREEVPTWKSRVITYERCLLYTMAFDLTVVHPFKALQDLMKTVRDVMAEEGKKTGLS----GGPGKALASLPFPSASSSPAASALDHRTVFAQACKFLNDSFFLPALIEVDASYSAALALYLTLVLYDIKPPAGKGSWLEVWHIQDEPRFLRDCLLAVKTYGEESG--KRLNLEPVPDPAAVEVPPAEDALGR---DMATLYGGSKAGGMPGGLLRNLTPL 443
The following BLAST results are available for this feature:
BLAST of NO01G01210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29061.11.000e-10553.42Cyclin C/H/T/L [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01210NO01G01210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01210.1NO01G01210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01210.1.cds1NO01G01210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01210.1 ID=NO01G01210.1|Name=NO01G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp
ATGTCTAGTCCTTTGTACAGCGGCTCTCCGGGTCGCCAAAGCCACCGGGA
CCGGGACAGAGGCCACCGATATAGCAGTGGAGGAGGCAAGCACAGCAGGG
AGCGGAGCAGGGAGCGGAGCCGGGAGCGTGGGAACACCGGCACTACCAGC
GGTAGTGATAGCAAGCATCAGAGTTCCTCACTACGACGGCGAAGCAAGAC
GAAGGATGGGCATGACAGTTTTACTGGCGGACGGTCGTCTCTAGGCGGCT
CCTCGTCCTCGTCCTCATCCTCCTTGTCTTCCCACTCCCGCCCGCCCATC
CACGAAAGCAGTAACAGCGGCGGCGGCGGCAGCAACAGCAATTATCGACG
CACCCACCAACCACCACCCCTCTCCTCCGAAACTCGCCAAGCTTACTTTA
TCAAATCATGTGCCTTTCTTGTGGCCTTGAGCAAAGAGCTCCACCTTGGG
AAGGTCGCTACACACACTGCTCTCGTCTTCTTCCACCGCTTTTTCAAACA
CCAATCATTCCAAGCCCACGACCGCCTTCTCGTCGCCACCGCCTGCATCT
ACCTTGCAGCCAAGACTGAAGAACGGAATAACGTCAAGCTCTCTATTATC
GTCGTCCAGTACTTAAAAAAAATAGACGTCCTTCCAGATGAAGTCGACCC
TCTCGAATACAACCGCAACGCCGTCGCCCGCGAAGCGGTCCCGGCATGGA
AATTCCGTGTCATCTCCTATGAGAGGTGTCTTTTGTACACGATCGCTTTT
GATTTGACCGTCACCCATCCCTTCAGGACCTTGCAGGACATGATGAAAAC
TGTGCGGGACGTCATGGCGGAGGAAGGAAGGAAGGGCGGGCCTGCAGCAA
TAGGGATGGGTGCCGGGAGCAATATCACATCTTCGTTGACCTTCTCGCAA
CAACAACAACAGCAACAGCCCTTTGACCACCGGACATTCTTTTCCCAAGC
CTGTAAATTCCTTAATGATAGCTTCTGCAACCCCTCCCTTATTGACGTCG
AGCCCTCCTACTCCGCCGCCCTGGCCCTATACCTCACCACCCTCCTTTAC
GGCATAAAGCCCCCGACGAATAAAGGCACTTGGCTTGAAATCTTTCATGT
CCAAGACGAAGCCCGTTTCCTCTCTGATTGTTCGCTGGCGATTCAAATGT
ATGGGGAAGAGAATTCAAATTTTCAAATTTTGAATGTTGTAGACGTACCC
GAGCCAAGTTCCGTTCCTTTGGCGGTGACGAGGTCGGGTGTTCATTCCCG
AGAACTGGAAATATCCTCTCTGTATGGAGGAGGAGGGTTGAGACGGTTGT
CACCGTTGTTTTAG
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protein sequence of NO01G01210.1

>NO01G01210.1-protein ID=NO01G01210.1-protein|Name=NO01G01210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MSSPLYSGSPGRQSHRDRDRGHRYSSGGGKHSRERSRERSRERGNTGTTS
GSDSKHQSSSLRRRSKTKDGHDSFTGGRSSLGGSSSSSSSSLSSHSRPPI
HESSNSGGGGSNSNYRRTHQPPPLSSETRQAYFIKSCAFLVALSKELHLG
KVATHTALVFFHRFFKHQSFQAHDRLLVATACIYLAAKTEERNNVKLSII
VVQYLKKIDVLPDEVDPLEYNRNAVAREAVPAWKFRVISYERCLLYTIAF
DLTVTHPFRTLQDMMKTVRDVMAEEGRKGGPAAIGMGAGSNITSSLTFSQ
QQQQQQPFDHRTFFSQACKFLNDSFCNPSLIDVEPSYSAALALYLTTLLY
GIKPPTNKGTWLEIFHVQDEARFLSDCSLAIQMYGEENSNFQILNVVDVP
EPSSVPLAVTRSGVHSRELEISSLYGGGGLRRLSPLF*
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mRNA from alignment at chr1:315224..316537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01210.1 ID=NO01G01210.1|Name=NO01G01210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp|location=Sequence derived from alignment at chr1:315224..316537- (Nannochloropsis oceanica)
ATGTCTAGTCCTTTGTACAGCGGCTCTCCGGGTCGCCAAAGCCACCGGGA
CCGGGACAGAGGCCACCGATATAGCAGTGGAGGAGGCAAGCACAGCAGGG
AGCGGAGCAGGGAGCGGAGCCGGGAGCGTGGGAACACCGGCACTACCAGC
GGTAGTGATAGCAAGCATCAGAGTTCCTCACTACGACGGCGAAGCAAGAC
GAAGGATGGGCATGACAGTTTTACTGGCGGACGGTCGTCTCTAGGCGGCT
CCTCGTCCTCGTCCTCATCCTCCTTGTCTTCCCACTCCCGCCCGCCCATC
CACGAAAGCAGTAACAGCGGCGGCGGCGGCAGCAACAGCAATTATCGACG
CACCCACCAACCACCACCCCTCTCCTCCGAAACTCGCCAAGCTTACTTTA
TCAAATCATGTGCCTTTCTTGTGGCCTTGAGCAAAGAGCTCCACCTTGGG
AAGGTCGCTACACACACTGCTCTCGTCTTCTTCCACCGCTTTTTCAAACA
CCAATCATTCCAAGCCCACGACCGCCTTCTCGTCGCCACCGCCTGCATCT
ACCTTGCAGCCAAGACTGAAGAACGGAATAACGTCAAGCTCTCTATTATC
GTCGTCCAGTACTTAAAAAAAATAGACGTCCTTCCAGATGAAGTCGACCC
TCTCGAATACAACCGCAACGCCGTCGCCCGCGAAGCGGTCCCGGCATGGA
AATTCCGTGTCATCTCCTATGAGAGGTGTCTTTTGTACACGATCGCTTTT
GATTTGACCGTCACCCATCCCTTCAGGACCTTGCAGGACATGATGAAAAC
TGTGCGGGACGTCATGGCGGAGGAAGGAAGGAAGGGCGGGCCTGCAGCAA
TAGGGATGGGTGCCGGGAGCAATATCACATCTTCGTTGACCTTCTCGCAA
CAACAACAACAGCAACAGCCCTTTGACCACCGGACATTCTTTTCCCAAGC
CTGTAAATTCCTTAATGATAGCTTCTGCAACCCCTCCCTTATTGACGTCG
AGCCCTCCTACTCCGCCGCCCTGGCCCTATACCTCACCACCCTCCTTTAC
GGCATAAAGCCCCCGACGAATAAAGGCACTTGGCTTGAAATCTTTCATGT
CCAAGACGAAGCCCGTTTCCTCTCTGATTGTTCGCTGGCGATTCAAATGT
ATGGGGAAGAGAATTCAAATTTTCAAATTTTGAATGTTGTAGACGTACCC
GAGCCAAGTTCCGTTCCTTTGGCGGTGACGAGGTCGGGTGTTCATTCCCG
AGAACTGGAAATATCCTCTCTGTATGGAGGAGGAGGGTTGAGACGGTTGT
CACCGTTGTTTTAG
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Coding sequence (CDS) from alignment at chr1:315224..316537-

>NO01G01210.1 ID=NO01G01210.1|Name=NO01G01210.1|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at chr1:315224..316537- (Nannochloropsis oceanica)
ATGTCTAGTCCTTTGTACAGCGGCTCTCCGGGTCGCCAAAGCCACCGGGA
CCGGGACAGAGGCCACCGATATAGCAGTGGAGGAGGCAAGCACAGCAGGG
AGCGGAGCAGGGAGCGGAGCCGGGAGCGTGGGAACACCGGCACTACCAGC
GGTAGTGATAGCAAGCATCAGAGTTCCTCACTACGACGGCGAAGCAAGAC
GAAGGATGGGCATGACAGTTTTACTGGCGGACGGTCGTCTCTAGGCGGCT
CCTCGTCCTCGTCCTCATCCTCCTTGTCTTCCCACTCCCGCCCGCCCATC
CACGAAAGCAGTAACAGCGGCGGCGGCGGCAGCAACAGCAATTATCGACG
CACCCACCAACCACCACCCCTCTCCTCCGAAACTCGCCAAGCTTACTTTA
TCAAATCATGTGCCTTTCTTGTGGCCTTGAGCAAAGAGCTCCACCTTGGG
AAGGTCGCTACACACACTGCTCTCGTCTTCTTCCACCGCTTTTTCAAACA
CCAATCATTCCAAGCCCACGACCGCCTTCTCGTCGCCACCGCCTGCATCT
ACCTTGCAGCCAAGACTGAAGAACGGAATAACGTCAAGCTCTCTATTATC
GTCGTCCAGTACTTAAAAAAAATAGACGTCCTTCCAGATGAAGTCGACCC
TCTCGAATACAACCGCAACGCCGTCGCCCGCGAAGCGGTCCCGGCATGGA
AATTCCGTGTCATCTCCTATGAGAGGTGTCTTTTGTACACGATCGCTTTT
GATTTGACCGTCACCCATCCCTTCAGGACCTTGCAGGACATGATGAAAAC
TGTGCGGGACGTCATGGCGGAGGAAGGAAGGAAGGGCGGGCCTGCAGCAA
TAGGGATGGGTGCCGGGAGCAATATCACATCTTCGTTGACCTTCTCGCAA
CAACAACAACAGCAACAGCCCTTTGACCACCGGACATTCTTTTCCCAAGC
CTGTAAATTCCTTAATGATAGCTTCTGCAACCCCTCCCTTATTGACGTCG
AGCCCTCCTACTCCGCCGCCCTGGCCCTATACCTCACCACCCTCCTTTAC
GGCATAAAGCCCCCGACGAATAAAGGCACTTGGCTTGAAATCTTTCATGT
CCAAGACGAAGCCCGTTTCCTCTCTGATTGTTCGCTGGCGATTCAAATGT
ATGGGGAAGAGAATTCAAATTTTCAAATTTTGAATGTTGTAGACGTACCC
GAGCCAAGTTCCGTTCCTTTGGCGGTGACGAGGTCGGGTGTTCATTCCCG
AGAACTGGAAATATCCTCTCTGTATGGAGGAGGAGGGTTGAGACGGTTGT
CACCGTTGTTTTAG
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Synonyms
Publications