NO01G01160.1, NO01G01160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01160.1
Unique NameNO01G01160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length792
Alignment locationchr1:295536..296697 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:295536..296697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01160.1 vs.
Match: XP_019635118.1 (PREDICTED: protein Simiate-like [Branchiostoma belcheri])

HSP 1 Score: 65.1 bits (157), Expect = 3.800e-7
Identity = 40/128 (31.25%), Postives = 72/128 (56.25%), Query Frame = 0 
Query:  129 GASPAGATSTVIKRV-RITSRGRGKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGLLLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDA-REAEGQGKDGAGGNKD 255
            G S A     V ++V R+ ++  GK ++G   ++  + L RV  +D  EF ++  + G+++E+NE L   P LL  +P  +GY+AI+  P+F     +++ L++P+ YRDA    E +G   A G ++
Sbjct:   64 GKSVARVDFQVTEKVNRLDNKVIGKGKRGGQWLQESSPLCRVTCTDDTEFTLYSCIKGKLVEVNENLINSPQLLTEKPSSEGYVAIVL-PKFGESDKEMARLLSPQQYRDALARREREGPAAAAGERE 190
The following BLAST results are available for this feature:
BLAST of NO01G01160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_019635118.13.800e-731.25PREDICTED: protein Simiate-like [Branchiostoma bel... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01160NO01G01160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01160.1NO01G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01160.1.cds1NO01G01160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01160.1.cds2NO01G01160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01160.1.cds3NO01G01160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01160.1.cds4NO01G01160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01160.1 ID=NO01G01160.1|Name=NO01G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
ATGGAGGACCCCGAAGAAGCATCTGCTTTGCTTGCTCAAGCCGCAATCTT
TCCCCCCGGCTCATTGCAACGCCGCTTTACCCTTCACTACTGGCGGCATG
CAGGACTCGATGCCCAGAAGGAGTATCAAACACGCGAAGAAACGCACATA
GGAGAACAAGAAGGGCATAATCTATTGTATGGTTTACATCAATACCTGTA
CCACCACCCAAACGGGCTCTTTATTGTCGGTCTAGCTAAGGACAATGTAA
TATTGAAAATGTGTCGACAGGAAAGCATCACTATTGCAAGCGTAGAATTT
CTGCCTGACAACAAGCCCTCGGGGAAGGGTAAAAGAGGAGCAGGGGGCGG
CGATGTAGGGGCAGGTCCAGAAGCCACTTCGGCGGGAGCCTCCCCAGCAG
GGGCCACTTCCACCGTAATAAAGCGCGTTAGGATTACAAGCCGCGGACGA
GGTAAAAAACAAAAGGGTAGCTTGCACGTTAGGCGGGACACAGTGTTGGC
CCGCGTGGTTCTCAGCGATGGAAGAGAGTTTCCGGTGTTTGGAGGCGTTA
ATGGCCAAGTGCTGGAATTGAATGAGCTCTTAAGCGAAGACCCGGGTTTG
CTGCTTCGTCAGCCGGAGGACCAAGGATACATAGCCATCCTCCAGCCACC
ACGATTCGCCGCCATCCCGCCAGACTTGAGTCACTTGATTGCCCCGGAAG
CCTATCGTGACGCAAGAGAAGCCGAAGGGCAAGGGAAGGACGGGGCGGGA
GGGAATAAGGATGGCCATGCGCCAACGGGGCCATCATCATAA
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protein sequence of NO01G01160.1

>NO01G01160.1-protein ID=NO01G01160.1-protein|Name=NO01G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MEDPEEASALLAQAAIFPPGSLQRRFTLHYWRHAGLDAQKEYQTREETHI
GEQEGHNLLYGLHQYLYHHPNGLFIVGLAKDNVILKMCRQESITIASVEF
LPDNKPSGKGKRGAGGGDVGAGPEATSAGASPAGATSTVIKRVRITSRGR
GKKQKGSLHVRRDTVLARVVLSDGREFPVFGGVNGQVLELNELLSEDPGL
LLRQPEDQGYIAILQPPRFAAIPPDLSHLIAPEAYRDAREAEGQGKDGAG
GNKDGHAPTGPSS*
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mRNA from alignment at chr1:295536..296697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01160.1 ID=NO01G01160.1|Name=NO01G01160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1162bp|location=Sequence derived from alignment at chr1:295536..296697+ (Nannochloropsis oceanica)
ATGGAGGACCCCGAAGAAGCATCTGCTTTGCTTGCTCAAGCCGCAATCTT
TCCCCCCGGCTCATTGCAACGCCGCTTTACCCTTCACTACTGGCGGCATG
CAGGACTCGATGCCCAGAAGGAGTATCAAACACGCGAAGAAACGCACATA
GGAGAACAAGAAGGGCATAATCTATTGTATGGTTTACATCAATACCTGTA
CCACCACCCAAACGGGCTCTTTATTGTCGGTCTAGGTAAGTCTCCTGGGC
GACCTGGCTCTTGTGCCCCGCCCGTCTCTCATCCCCTTATTCTCCCTACG
TCCCCTTCTCTCTCCACCCACGGTACAGCTAAGGACAATGTAATATTGAA
AATGTGTCGACAGGAAAGCATCACTATTGCAAGCGTAGAATTTCTGCCTG
ACAACAAGCCCTCGGGGAAGGGTAAAAGAGGAGCAGGGGGCGGCGATGTA
GGGGCAGGTCCAGAAGCCACTTCGGCGGGAGCCTCCCCAGCAGGGGCCAC
TTCCACCGTAATAAAGCGCGTTAGGATTACAAGCCGCGGACGAGGTAAAA
AACAAAAGGGTAGCTTGCACGTTAGGCGGGACACAGTGTTGGCCCGCGTG
GTTCTCAGCGATGGAAGAGAGTTTCCGGTGTTTGGGTACGTGAGGGAAGG
AAATGAGGGAAATGAAAGGGCAAGAAAACTGGCTGACAGTCGAATTATGC
TACCGCCAGCCCGACGCTTGAACTCTCTACACATATATTCGACATTTCTT
TGATTTTACAGAGGCGTTAATGGCCAAGTGCTGGAATTGAATGAGCTCTT
AAGCGAAGACCCGGGTTTGCTGCTTCGTCAGGTACGCTTTATTTTACGAA
GGTTCCCTGGTTTTGTTTTATTTTACTCTGTATGTGAGCGTCAGCAAAAA
TAAATTATAAAGTAAATCACTCGATGACCTGTCATAGCATCGTGAACGTG
AATCCCCCACCTCTTTAACCTCCCCATCCCAGCCGGAGGACCAAGGATAC
ATAGCCATCCTCCAGCCACCACGATTCGCCGCCATCCCGCCAGACTTGAG
TCACTTGATTGCCCCGGAAGCCTATCGTGACGCAAGAGAAGCCGAAGGGC
AAGGGAAGGACGGGGCGGGAGGGAATAAGGATGGCCATGCGCCAACGGGG
CCATCATCATAA
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Coding sequence (CDS) from alignment at chr1:295536..296697+

>NO01G01160.1 ID=NO01G01160.1|Name=NO01G01160.1|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at chr1:295536..296697+ (Nannochloropsis oceanica)
ATGGAGGACCCCGAAGAAGCATCTGCTTTGCTTGCTCAAGCCGCAATCTT
TCCCCCCGGCTCATTGCAACGCCGCTTTACCCTTCACTACTGGCGGCATG
CAGGACTCGATGCCCAGAAGGAGTATCAAACACGCGAAGAAACGCACATA
GGAGAACAAGAAGGGCATAATCTATTGTATGGTTTACATCAATACCTGTA
CCACCACCCAAACGGGCTCTTTATTGTCGGTCTAGCTAAGGACAATGTAA
TATTGAAAATGTGTCGACAGGAAAGCATCACTATTGCAAGCGTAGAATTT
CTGCCTGACAACAAGCCCTCGGGGAAGGGTAAAAGAGGAGCAGGGGGCGG
CGATGTAGGGGCAGGTCCAGAAGCCACTTCGGCGGGAGCCTCCCCAGCAG
GGGCCACTTCCACCGTAATAAAGCGCGTTAGGATTACAAGCCGCGGACGA
GGTAAAAAACAAAAGGGTAGCTTGCACGTTAGGCGGGACACAGTGTTGGC
CCGCGTGGTTCTCAGCGATGGAAGAGAGTTTCCGGTGTTTGGAGGCGTTA
ATGGCCAAGTGCTGGAATTGAATGAGCTCTTAAGCGAAGACCCGGGTTTG
CTGCTTCGTCAGCCGGAGGACCAAGGATACATAGCCATCCTCCAGCCACC
ACGATTCGCCGCCATCCCGCCAGACTTGAGTCACTTGATTGCCCCGGAAG
CCTATCGTGACGCAAGAGAAGCCGAAGGGCAAGGGAAGGACGGGGCGGGA
GGGAATAAGGATGGCCATGCGCCAACGGGGCCATCATCATAA
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Synonyms
Publications