NO01G01140.1, NO01G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01140.1
Unique NameNO01G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1452
Alignment locationchr1:289094..290679 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:289094..290679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01140.1 vs.
Match: EWM29043.1 (gtp cyclohydrolase ii [Nannochloropsis gaditana])

HSP 1 Score: 304.7 bits (779), Expect = 4.400e-79
Identity = 212/425 (49.88%), Postives = 271/425 (63.76%), Query Frame = 0 
Query:    1 MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTLSPTLALPRTVVVPPSPPSSPSQGRLLTRK--KTEVRGSPRVTRRTTAEEGGKEGGQKQQAKIEAVAAAQVAAPPALAAATAAAGAGRKWDYGQVQVKKALAHLNDGKAIVLVDRHMDPSSSSSSSS---SSSSSSNRVLGGDLVLLANKASEEVLSLYLQATSGIVFCLLPPERLAELWKGSGAAATAAGLDVKATIST--GGGRGGAAGARGRRSAAEGRAATLRALGREGG---REGG-----LSLSDFSTPGHIFVVSPGAAIGTAEDCAKKGLVRPSSINVRRGWALEMARLAREEGER-EGGREGG-GDAAVAVAELIDQGTGEGLDVEGSEDFARRHGLVIISVQDLLRFVREDVE----EGEEEVAEEEKG 405
            MTNNPLKL+CL KLG+ VSKVVPIVVAPN FNERYLITKAERM+HTLSP LAL R++VVPP+P ++  +G     K  K ++     ++R+       K  G +Q  + EA    +V          A   +G + D G  +V+ AL  L +G+ +VL+D+    +S ++  +    +S S    +G DLV+LA+ AS+E LSL+L+  SG+ +CLLPP RL  LWKGSGAAATAAGLD+K ++      GRG   G+RG  SAA  RAATLRALG   G   REG      LSLSDFS+PGH+FVVSPGAAIGTAED A +GL RPSS++VRR WALEMAR   E+ +  E  REGG    +V VAEL+D+ TGEG+ VE        HGL + SV+ + RFV E  +    EG   V EEE+G
Sbjct:  322 MTNNPLKLECLLKLGVRVSKVVPIVVAPNVFNERYLITKAERMAHTLSPALALQRSLVVPPAPATAGMRGGDSGEKQEKADISREILLSRKRKGVRTWK--GVRQPEEGEATGRKEVGP----GRTDAGVSSGGREDAGLGEVEHALRSLREGRVVVLLDKTPGAASGATERAPDGENSGSDTHGIGADLVVLAHMASKETLSLFLRTISGVTYCLLPPARLTALWKGSGAAATAAGLDLKDSVLALWEEGRGNEDGSRGS-SAARKRAATLRALGGGDGVGEREGAGGVRELSLSDFSSPGHVFVVSPGAAIGTAEDKAMRGLARPSSVSVRREWALEMARWMEEKADSGEWKREGGTAGVSVGVAELVDRETGEGMTVEEVAALVEEHGLAVTSVEKVARFVHERQQQITTEGTVRVEEEEEG 739
The following BLAST results are available for this feature:
BLAST of NO01G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29043.14.400e-7949.88gtp cyclohydrolase ii [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01140NO01G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01140.1NO01G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01140.1.cds1NO01G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01140.1.cds2NO01G01140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01140.1 ID=NO01G01140.1|Name=NO01G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp
ATGACCAACAACCCACTGAAGCTGGATTGTCTGCAGAAATTGGGAATAAC
CGTGTCTAAGGTGGTGCCCATCGTGGTGGCGCCCAATCCTTTCAATGAGC
GGTACCTCATTACCAAAGCTGAGCGGATGTCACACACCCTCTCCCCCACC
CTCGCCCTTCCGCGAACCGTCGTCGTCCCTCCCTCCCCCCCTTCTTCGCC
CTCACAAGGGCGGTTGCTGACCCGCAAAAAGACAGAAGTCAGAGGAAGTC
CGAGGGTTACCCGGAGGACCACGGCTGAGGAGGGAGGGAAGGAGGGAGGC
CAAAAGCAGCAAGCAAAGATAGAAGCTGTGGCAGCAGCACAAGTAGCAGC
GCCACCAGCTCTTGCAGCTGCAACAGCAGCTGCAGGAGCAGGAAGGAAAT
GGGATTATGGTCAGGTGCAAGTCAAAAAAGCGCTTGCTCATTTGAATGAC
GGGAAGGCCATCGTCCTGGTCGACCGCCACATGGACCCTAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGAGTGCTGGGTGGGG
ATTTGGTGCTGCTGGCGAATAAGGCTTCAGAAGAAGTCCTTTCTCTGTAC
TTACAGGCAACCAGCGGGATTGTGTTTTGTTTATTGCCGCCCGAACGACT
TGCTGAGCTCTGGAAAGGGAGTGGTGCCGCTGCCACTGCTGCAGGGTTAG
ATGTTAAGGCGACAATTTCAACAGGAGGAGGACGAGGAGGAGCAGCAGGA
GCAAGAGGCAGACGTTCGGCGGCTGAGGGAAGGGCGGCGACCTTGCGAGC
GTTGGGGAGGGAGGGAGGGAGGGAGGGAGGATTGTCACTGAGTGATTTTT
CGACCCCGGGGCACATTTTTGTGGTGTCGCCGGGGGCAGCGATAGGGACG
GCGGAAGATTGTGCGAAGAAGGGACTGGTGCGACCGTCCTCCATCAATGT
GAGGAGGGGGTGGGCATTGGAGATGGCGCGGTTGGCAAGGGAGGAGGGAG
AGAGGGAAGGAGGGAGGGAAGGAGGGGGGGATGCAGCGGTAGCGGTGGCG
GAACTGATCGATCAGGGGACGGGGGAAGGGTTGGATGTAGAGGGAAGTGA
GGATTTCGCCAGAAGGCACGGTCTGGTGATTATTTCGGTGCAGGATTTGC
TGCGCTTCGTGAGGGAGGATGTGGAGGAGGGGGAGGAAGAGGTGGCGGAG
GAGGAGAAGGGGGGAAGATAGCACAAGGTGATTTAGACAGGGAGGGAGGA
AGGGAGGGAGGAAGGGAGGGAAGAACCGCGGATTTAGCCTTGCCTTTCCT
CTGTAGCTGTTGCTGGCGAGGCCCTCTGATATATATACATAGCGAAATCT
AGGACATGACAGCACCAAAAACACTTCTCACTGGAAGAGAGGAAACGAGG
GTGTTGATTTAAATATAACAAACCCCAGAAAGAAAATCAACGGGCACCCG
AA
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protein sequence of NO01G01140.1

>NO01G01140.1-protein ID=NO01G01140.1-protein|Name=NO01G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MTNNPLKLDCLQKLGITVSKVVPIVVAPNPFNERYLITKAERMSHTLSPT
LALPRTVVVPPSPPSSPSQGRLLTRKKTEVRGSPRVTRRTTAEEGGKEGG
QKQQAKIEAVAAAQVAAPPALAAATAAAGAGRKWDYGQVQVKKALAHLND
GKAIVLVDRHMDPSSSSSSSSSSSSSSNRVLGGDLVLLANKASEEVLSLY
LQATSGIVFCLLPPERLAELWKGSGAAATAAGLDVKATISTGGGRGGAAG
ARGRRSAAEGRAATLRALGREGGREGGLSLSDFSTPGHIFVVSPGAAIGT
AEDCAKKGLVRPSSINVRRGWALEMARLAREEGEREGGREGGGDAAVAVA
ELIDQGTGEGLDVEGSEDFARRHGLVIISVQDLLRFVREDVEEGEEEVAE
EEKGGR*
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mRNA from alignment at chr1:289094..290679+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01140.1 ID=NO01G01140.1|Name=NO01G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1586bp|location=Sequence derived from alignment at chr1:289094..290679+ (Nannochloropsis oceanica)
ATGACCAACAACCCACTGAAGCTGGATTGTCTGCAGAAATTGGGAATAAC
CGTGTCTAAGGTGGTGCCCATCGTGGTGGCGCCCAATCCTTTCAATGAGC
GGTAAGTTAGAGACTTGTGCCCCCTCTCTACCCTATCTCCTTCAGGAACC
CTTCTCTTCCTTCGACTGTTTTGTATGCACCATGACTGACTTCCTCCTCT
TTTCCTACCCTCCCTCCCTCCCTACCATCCCACAGGTACCTCATTACCAA
AGCTGAGCGGATGTCACACACCCTCTCCCCCACCCTCGCCCTTCCGCGAA
CCGTCGTCGTCCCTCCCTCCCCCCCTTCTTCGCCCTCACAAGGGCGGTTG
CTGACCCGCAAAAAGACAGAAGTCAGAGGAAGTCCGAGGGTTACCCGGAG
GACCACGGCTGAGGAGGGAGGGAAGGAGGGAGGCCAAAAGCAGCAAGCAA
AGATAGAAGCTGTGGCAGCAGCACAAGTAGCAGCGCCACCAGCTCTTGCA
GCTGCAACAGCAGCTGCAGGAGCAGGAAGGAAATGGGATTATGGTCAGGT
GCAAGTCAAAAAAGCGCTTGCTCATTTGAATGACGGGAAGGCCATCGTCC
TGGTCGACCGCCACATGGACCCTAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAACAGAGTGCTGGGTGGGGATTTGGTGCTGCTGGC
GAATAAGGCTTCAGAAGAAGTCCTTTCTCTGTACTTACAGGCAACCAGCG
GGATTGTGTTTTGTTTATTGCCGCCCGAACGACTTGCTGAGCTCTGGAAA
GGGAGTGGTGCCGCTGCCACTGCTGCAGGGTTAGATGTTAAGGCGACAAT
TTCAACAGGAGGAGGACGAGGAGGAGCAGCAGGAGCAAGAGGCAGACGTT
CGGCGGCTGAGGGAAGGGCGGCGACCTTGCGAGCGTTGGGGAGGGAGGGA
GGGAGGGAGGGAGGATTGTCACTGAGTGATTTTTCGACCCCGGGGCACAT
TTTTGTGGTGTCGCCGGGGGCAGCGATAGGGACGGCGGAAGATTGTGCGA
AGAAGGGACTGGTGCGACCGTCCTCCATCAATGTGAGGAGGGGGTGGGCA
TTGGAGATGGCGCGGTTGGCAAGGGAGGAGGGAGAGAGGGAAGGAGGGAG
GGAAGGAGGGGGGGATGCAGCGGTAGCGGTGGCGGAACTGATCGATCAGG
GGACGGGGGAAGGGTTGGATGTAGAGGGAAGTGAGGATTTCGCCAGAAGG
CACGGTCTGGTGATTATTTCGGTGCAGGATTTGCTGCGCTTCGTGAGGGA
GGATGTGGAGGAGGGGGAGGAAGAGGTGGCGGAGGAGGAGAAGGGGGGAA
GATAGCACAAGGTGATTTAGACAGGGAGGGAGGAAGGGAGGGAGGAAGGG
AGGGAAGAACCGCGGATTTAGCCTTGCCTTTCCTCTGTAGCTGTTGCTGG
CGAGGCCCTCTGATATATATACATAGCGAAATCTAGGACATGACAGCACC
AAAAACACTTCTCACTGGAAGAGAGGAAACGAGGGTGTTGATTTAAATAT
AACAAACCCCAGAAAGAAAATCAACGGGCACCCGAA
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Coding sequence (CDS) from alignment at chr1:289094..290679+

>NO01G01140.1 ID=NO01G01140.1|Name=NO01G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr1:289094..290679+ (Nannochloropsis oceanica)
ATGACCAACAACCCACTGAAGCTGGATTGTCTGCAGAAATTGGGAATAAC
CGTGTCTAAGGTGGTGCCCATCGTGGTGGCGCCCAATCCTTTCAATGAGC
GGTACCTCATTACCAAAGCTGAGCGGATGTCACACACCCTCTCCCCCACC
CTCGCCCTTCCGCGAACCGTCGTCGTCCCTCCCTCCCCCCCTTCTTCGCC
CTCACAAGGGCGGTTGCTGACCCGCAAAAAGACAGAAGTCAGAGGAAGTC
CGAGGGTTACCCGGAGGACCACGGCTGAGGAGGGAGGGAAGGAGGGAGGC
CAAAAGCAGCAAGCAAAGATAGAAGCTGTGGCAGCAGCACAAGTAGCAGC
GCCACCAGCTCTTGCAGCTGCAACAGCAGCTGCAGGAGCAGGAAGGAAAT
GGGATTATGGTCAGGTGCAAGTCAAAAAAGCGCTTGCTCATTTGAATGAC
GGGAAGGCCATCGTCCTGGTCGACCGCCACATGGACCCTAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGAGTGCTGGGTGGGG
ATTTGGTGCTGCTGGCGAATAAGGCTTCAGAAGAAGTCCTTTCTCTGTAC
TTACAGGCAACCAGCGGGATTGTGTTTTGTTTATTGCCGCCCGAACGACT
TGCTGAGCTCTGGAAAGGGAGTGGTGCCGCTGCCACTGCTGCAGGGTTAG
ATGTTAAGGCGACAATTTCAACAGGAGGAGGACGAGGAGGAGCAGCAGGA
GCAAGAGGCAGACGTTCGGCGGCTGAGGGAAGGGCGGCGACCTTGCGAGC
GTTGGGGAGGGAGGGAGGGAGGGAGGGAGGATTGTCACTGAGTGATTTTT
CGACCCCGGGGCACATTTTTGTGGTGTCGCCGGGGGCAGCGATAGGGACG
GCGGAAGATTGTGCGAAGAAGGGACTGGTGCGACCGTCCTCCATCAATGT
GAGGAGGGGGTGGGCATTGGAGATGGCGCGGTTGGCAAGGGAGGAGGGAG
AGAGGGAAGGAGGGAGGGAAGGAGGGGGGGATGCAGCGGTAGCGGTGGCG
GAACTGATCGATCAGGGGACGGGGGAAGGGTTGGATGTAGAGGGAAGTGA
GGATTTCGCCAGAAGGCACGGTCTGGTGATTATTTCGGTGCAGGATTTGC
TGCGCTTCGTGAGGGAGGATGTGGAGGAGGGGGAGGAAGAGGTGGCGGAG
GAGGAGAAGGGGGGAAGATAG
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Synonyms
Publications