NO01G01120.1, NO01G01120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01120.1
Unique NameNO01G01120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1079
Alignment locationchr1:286357..287938 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:286357..287938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01120.1 vs.
Match: EWM29042.1 (hypothetical protein Naga_100071g7 [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 3.400e-26
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 0
Query:    1 MLSNAIRQAARLQQRRTLATSAAGDVVYGKSFSAAWLGDKGAWPVLGIIGGALVFCGGFISTKLMFHPDVRITADKRKSDIRT 84
            M++N +RQ AR+QQ RTL+TS    V YGKSFSA WLGDKGAWPV+GIIGGALVFCG FIS K+MFHPDVRIT  KR +DI++
Sbjct:   21 MIANTVRQFARVQQLRTLSTSVPSGVRYGKSFSATWLGDKGAWPVIGIIGGALVFCGSFISNKIMFHPDVRITPSKRNADIQS 103          
The following BLAST results are available for this feature:
BLAST of NO01G01120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29042.13.400e-2671.08hypothetical protein Naga_100071g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01120NO01G01120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01120.1NO01G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01120.1.cds1NO01G01120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01120.1.cds2NO01G01120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01120.1.cds3NO01G01120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01120.1 ID=NO01G01120.1|Name=NO01G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
AATAATTGAGTGAGAAGAAAGCTTGCGTGAGTTGCAGCGGGATGCACCAA
CAGGACGAGGAGCCACAGCGCAGCCAAGTCGCGTTGCGGATAAGAAGGCT
CGGTCCACTAGCCTTCAGCTCGCTTTTCGTTTTCCCTCCCCACTAGCATC
CCCAGGCAAACCCAGTAACAAAGCAACACAGAGCAAATTATGGGCAGGGT
GCCCACAAAACTGGTGGTTGTGCTTGTTGTTGTAATGATTTGCCCTCTGG
CCTGGATGAGAGGCGCTGGTCCTGAACGGCTTCGGCGTGCAAGGACAAAC
CTACTACCCTAACCATTTGTGCCCCCTCTGCGTACCACATAACTACAGCA
ACATCATCAACCAACCAGCAATCATGCTTTCCAACGCCATCCGCCAGGCT
GCACGTCTGCAACAACGCCGCACTCTGGCCACCAGTGCTGCAGGCGATGT
AGTGTACGGCAAGAGCTTCAGTGCGGCCTGGCTCGGAGACAAGGGCGCGT
GGCCGGTTTTGGGCATCATCGGCGGTGCCCTAGTCTTCTGCGGGGGCTTC
ATTTCCACCAAGTTGATGTTCCATCCCGATGTCCGCATCACGGCCGACAA
GCGCAAATCCGATATTCGTACCTGGTCTTGAAATAAATTTTGGTCTTTTG
GTTGACAAGATGACACACTCGCACGACGCCAGCAGTATGTGTGGGCTAGG
TGGTTGTGTTGGTGTAGGAGGAGGGAAGGAGGGAGTGAGTGAGGAAGGGA
GGAAAGTCAAAACAATTGGTGGGTGTTATTCTTATTTGTATGAAATTCAA
AGAGAGTAGGTAAAGAGCAGAAAGTGAAAAAAGGATGTAAGGTGTTATCA
TCCTGGCGGGGGTTGAGGAAGGGACTGGGTGTTACGGATGAAAAGCAAAA
GGGAGGATAGGGCGTTTAAATGGGACACGTGATTACAGGACAGAAATTTG
GGGGATAGTAGCTTTTGTTGGTGCTCTTGCCTTTTATGAGAGGGGGATGA
GAGCTTTGCTCGTTTCTGTCTGTGAGGGTCTGGACATATGTTGAAGGAAA
GAGAAGAAGTACCAAGCCACCAAAATCAT
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protein sequence of NO01G01120.1

>NO01G01120.1-protein ID=NO01G01120.1-protein|Name=NO01G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MLSNAIRQAARLQQRRTLATSAAGDVVYGKSFSAAWLGDKGAWPVLGIIG
GALVFCGGFISTKLMFHPDVRITADKRKSDIRTWS*
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mRNA from alignment at chr1:286357..287938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01120.1 ID=NO01G01120.1|Name=NO01G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp|location=Sequence derived from alignment at chr1:286357..287938- (Nannochloropsis oceanica)
AATAATTGAGTGAGAAGAAAGCTTGCGTGAGTTGCAGCGGGATGCACCAA CAGGACGAGGAGCCACAGCGCAGCCAAGTCGCGTTGCGGATAAGAAGGCT CGGTCCACTAGCCTTCAGCTCGCTTTTCGTTTTCCCTCCCCACTAGCATC CCCAGGCAAACCCAGTAACAAAGCAACACAGAGCAAATTATGGGCAGGGT GCCCACAAAACTGGTGGTTGTGCTTGTTGTTGTAATGATTTGCCCTCTGG CCTGGATGAGAGGCGCTGGTCCTGAACGGCTTCGGCGTGCAAGGACAAAC CTACTACCCTAACCATTTGTGCCCCCTCTGCGTACCACATAACTACAGCA ACATCATCAACCAACCAGCAATCATGCTTTCCAACGCCATCCGCCAGGCT GCACGGTACGTAAGGGCTGGGGGGTGGGAGGAAGCGGACATGAAGTCGTG GCCCTTCGGAAGCCATGGATCGGGAGACGTGGAGAGGGTGATGAGTGGGA AGAGAAGAGAGGGTGCGAAATGGACGCAGGCTCGATCGTCATGCCTGGTC GCTTTGTAGTGCATTGAGAAGCATGGACATAAGATAGTGACAGGACGAGG AGCAGCAGGAACGAAGGAGGGAAGCGTAAGACGTGGTCAAAGTCGTAGCG CTCCAATCGTGTGGAGGCTCTACACCAAGCTAAAAACACCTGATTAAACT AGCATGTCGCCCCCAACCCCCACACACAGTCTGCAACAACGCCGCACTCT GGCCACCAGTGCTGCAGGCGATGTAGTGTACGGCAAGAGCTTCAGTGCGG CCTGGCTCGGAGACAAGGGTACGTTCTCTTGCCGTGGGTTTCCCCCCCAC TCTGCTAACCCTAACCCTAACCGTGGGTCCCCCCACCCCTCCGTCCACCT CGTAGCCCTCTCCCCAGAGAAAATCTCCCTCCTTCTCGCTTACTAGGCAC TTAATCGATTTATTTCTCACGCCCCCCATCCATGTCTATGTCTACAGGCG CGTGGCCGGTTTTGGGCATCATCGGCGGTGCCCTAGTCTTCTGCGGGGGC TTCATTTCCACCAAGTTGATGTTCCATCCCGATGTCCGCATCACGGCCGA CAAGCGCAAATCCGATATTCGTACCTGGTCTTGAAATAAATTTTGGTCTT TTGGTTGACAAGATGACACACTCGCACGACGCCAGCAGTATGTGTGGGCT AGGTGGTTGTGTTGGTGTAGGAGGAGGGAAGGAGGGAGTGAGTGAGGAAG GGAGGAAAGTCAAAACAATTGGTGGGTGTTATTCTTATTTGTATGAAATT CAAAGAGAGTAGGTAAAGAGCAGAAAGTGAAAAAAGGATGTAAGGTGTTA TCATCCTGGCGGGGGTTGAGGAAGGGACTGGGTGTTACGGATGAAAAGCA AAAGGGAGGATAGGGCGTTTAAATGGGACACGTGATTACAGGACAGAAAT TTGGGGGATAGTAGCTTTTGTTGGTGCTCTTGCCTTTTATGAGAGGGGGA TGAGAGCTTTGCTCGTTTCTGTCTGTGAGGGTCTGGACATATGTTGAAGG AAAGAGAAGAAGTACCAAGCCACCAAAATCAT
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Coding sequence (CDS) from alignment at chr1:286357..287938-

>NO01G01120.1 ID=NO01G01120.1|Name=NO01G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at chr1:286357..287938- (Nannochloropsis oceanica)
ATGCTTTCCAACGCCATCCGCCAGGCTGCACGTCTGCAACAACGCCGCAC
TCTGGCCACCAGTGCTGCAGGCGATGTAGTGTACGGCAAGAGCTTCAGTG
CGGCCTGGCTCGGAGACAAGGGCGCGTGGCCGGTTTTGGGCATCATCGGC
GGTGCCCTAGTCTTCTGCGGGGGCTTCATTTCCACCAAGTTGATGTTCCA
TCCCGATGTCCGCATCACGGCCGACAAGCGCAAATCCGATATTCGTACCT
GGTCTTGA
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Synonyms
Publications