NO01G01080.1, NO01G01080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01080.1
Unique NameNO01G01080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1095
Alignment locationchr1:275353..276447 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:275353..276447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G01080.1 vs.
Match: EWM29027.1 (thiamin pyrophosphokinase 1 [Nannochloropsis gaditana])

HSP 1 Score: 363.2 bits (931), Expect = 9.300e-97
Identity = 197/350 (56.29%), Postives = 240/350 (68.57%), Query Frame = 0 
Query:   22 NNNNNHNNNNNNNNNNIHGEGPSRLPVFNWRNRRDFGEHDAQGLVAATAAGQQYGSED--DSDGSDEEGEKEEGVVNALIILNTDCVGGGLFYKFWAHASVRICADGGANRLYDGLGGEEREQFLPSAIKGDLDSVRPEVVAWYKAKGCRVVKNGDVDTNDLEKCLELLKHTGEGGNDQRQQQQQQQQQQELPPWERKQHPTRQSLRTNVFVLGALGQRFDHAMASCHLLYRYAGVFKRLVLLGNESVAFLLPEGRNWVEPDGRMEGPLCGLIPLGRQCREIRTRGLKWDLRGESMEFGGLVSTSNEVV-------GERREDGRE---GVWIETSDPVIWTMALKEEWRK 360
            ++ +   ++ +  + N      S LP + W N  DFGEHD       TAAG+Q  ++      G D  G     V+NALIILNTDCVGG LF +FWAH+++R+CADGG NRLYD LG  ERE F+P AI GDLDS+R EV  WY+A+G +VVKN D D+NDLEKCLE LK  G+   ++       +    L PWERKQ  TRQS R NVFVLGALGQRFDH MA+CH+LYRY+ VF+RLVLLG ES+AFLLP GR+W+ PD R E P+CGLIP+G+ C  IRTRGL+W+LRGE+M  G LVSTSNE V       GE  E+GRE   GVWIE SDPVIWT  LK+EW+K
Sbjct:   15 SSRSRSKSDGSVRHKNAFPAALSPLPKYRWDNSVDFGEHDVDSAEPVTAAGRQTNNKGWRGQQGDDPNGS---AVINALIILNTDCVGGSLFRRFWAHSTLRVCADGGGNRLYDSLGKMEREDFVPMAINGDLDSLREEVADWYRARGSQVVKNADQDSNDLEKCLEFLK--GQEAANKGPGSSGGKDGVGLRPWERKQVATRQSSRLNVFVLGALGQRFDHTMANCHILYRYSKVFRRLVLLGEESLAFLLPAGRHWIVPDARTENPVCGLIPMGQPCTSIRTRGLRWELRGEAMAMGSLVSTSNERVMVDGGGEGEGGEEGREGERGVWIENSDPVIWTSGLKKEWQK 359
The following BLAST results are available for this feature:
BLAST of NO01G01080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29027.19.300e-9756.29thiamin pyrophosphokinase 1 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01080NO01G01080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01080.1NO01G01080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01080.1.cds1NO01G01080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01080.1 ID=NO01G01080.1|Name=NO01G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
ATGAATCCCCGCTGCAGCAATAGCAGTCTTAGCAGTAGCAGCCTTAGCAG
CAGGAACAACAACAACAACAACAACAATCACAACAACAACAACAACAACA
ACAACAACAACATCCATGGAGAGGGACCCTCGCGATTGCCCGTCTTTAAT
TGGCGAAACCGGCGCGACTTTGGAGAACATGATGCCCAGGGCTTGGTAGC
CGCCACTGCTGCTGGGCAACAGTACGGTAGCGAGGACGACAGCGACGGGA
GTGATGAGGAAGGAGAGAAGGAGGAAGGGGTGGTAAACGCTTTGATCATT
CTTAATACAGACTGTGTGGGTGGAGGATTATTTTACAAGTTTTGGGCGCA
TGCGAGCGTGAGGATCTGTGCGGATGGGGGGGCAAATCGTTTATATGACG
GGTTGGGAGGGGAGGAGAGGGAGCAGTTCCTCCCTTCAGCGATAAAGGGG
GATTTGGATTCAGTGCGGCCGGAAGTGGTGGCATGGTATAAAGCGAAAGG
GTGTCGTGTGGTGAAGAACGGGGATGTGGACACCAACGACCTTGAAAAAT
GCCTTGAGCTGTTAAAGCATACAGGAGAGGGAGGAAATGATCAGCGGCAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGGAACTACCGCCCTGGGAGCGCAA
GCAACATCCTACCCGGCAGAGTTTAAGAACGAACGTTTTTGTTCTCGGGG
CGCTGGGTCAGCGTTTTGATCATGCTATGGCGAGTTGTCATCTGCTTTAT
CGGTATGCAGGTGTGTTCAAACGGTTGGTATTGTTGGGGAATGAAAGCGT
GGCTTTCTTGTTGCCGGAGGGGAGGAACTGGGTGGAGCCTGATGGTAGGA
TGGAGGGGCCGCTGTGTGGCCTGATACCGCTGGGAAGACAGTGTCGGGAG
ATTAGAACGAGGGGTTTGAAGTGGGATTTGAGAGGGGAGAGTATGGAGTT
CGGGGGGCTGGTAAGCACGTCCAATGAGGTGGTGGGAGAGAGGAGGGAGG
ACGGACGGGAGGGTGTGTGGATTGAGACGTCGGATCCGGTGATATGGACG
ATGGCGTTGAAGGAGGAGTGGCGGAAAGATTTTCTGCATGTGTGA
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protein sequence of NO01G01080.1

>NO01G01080.1-protein ID=NO01G01080.1-protein|Name=NO01G01080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MNPRCSNSSLSSSSLSSRNNNNNNNNHNNNNNNNNNNIHGEGPSRLPVFN
WRNRRDFGEHDAQGLVAATAAGQQYGSEDDSDGSDEEGEKEEGVVNALII
LNTDCVGGGLFYKFWAHASVRICADGGANRLYDGLGGEEREQFLPSAIKG
DLDSVRPEVVAWYKAKGCRVVKNGDVDTNDLEKCLELLKHTGEGGNDQRQ
QQQQQQQQQELPPWERKQHPTRQSLRTNVFVLGALGQRFDHAMASCHLLY
RYAGVFKRLVLLGNESVAFLLPEGRNWVEPDGRMEGPLCGLIPLGRQCRE
IRTRGLKWDLRGESMEFGGLVSTSNEVVGERREDGREGVWIETSDPVIWT
MALKEEWRKDFLHV*
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mRNA from alignment at chr1:275353..276447+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01080.1 ID=NO01G01080.1|Name=NO01G01080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at chr1:275353..276447+ (Nannochloropsis oceanica)
ATGAATCCCCGCTGCAGCAATAGCAGTCTTAGCAGTAGCAGCCTTAGCAG
CAGGAACAACAACAACAACAACAACAATCACAACAACAACAACAACAACA
ACAACAACAACATCCATGGAGAGGGACCCTCGCGATTGCCCGTCTTTAAT
TGGCGAAACCGGCGCGACTTTGGAGAACATGATGCCCAGGGCTTGGTAGC
CGCCACTGCTGCTGGGCAACAGTACGGTAGCGAGGACGACAGCGACGGGA
GTGATGAGGAAGGAGAGAAGGAGGAAGGGGTGGTAAACGCTTTGATCATT
CTTAATACAGACTGTGTGGGTGGAGGATTATTTTACAAGTTTTGGGCGCA
TGCGAGCGTGAGGATCTGTGCGGATGGGGGGGCAAATCGTTTATATGACG
GGTTGGGAGGGGAGGAGAGGGAGCAGTTCCTCCCTTCAGCGATAAAGGGG
GATTTGGATTCAGTGCGGCCGGAAGTGGTGGCATGGTATAAAGCGAAAGG
GTGTCGTGTGGTGAAGAACGGGGATGTGGACACCAACGACCTTGAAAAAT
GCCTTGAGCTGTTAAAGCATACAGGAGAGGGAGGAAATGATCAGCGGCAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGGAACTACCGCCCTGGGAGCGCAA
GCAACATCCTACCCGGCAGAGTTTAAGAACGAACGTTTTTGTTCTCGGGG
CGCTGGGTCAGCGTTTTGATCATGCTATGGCGAGTTGTCATCTGCTTTAT
CGGTATGCAGGTGTGTTCAAACGGTTGGTATTGTTGGGGAATGAAAGCGT
GGCTTTCTTGTTGCCGGAGGGGAGGAACTGGGTGGAGCCTGATGGTAGGA
TGGAGGGGCCGCTGTGTGGCCTGATACCGCTGGGAAGACAGTGTCGGGAG
ATTAGAACGAGGGGTTTGAAGTGGGATTTGAGAGGGGAGAGTATGGAGTT
CGGGGGGCTGGTAAGCACGTCCAATGAGGTGGTGGGAGAGAGGAGGGAGG
ACGGACGGGAGGGTGTGTGGATTGAGACGTCGGATCCGGTGATATGGACG
ATGGCGTTGAAGGAGGAGTGGCGGAAAGATTTTCTGCATGTGTGA
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Coding sequence (CDS) from alignment at chr1:275353..276447+

>NO01G01080.1 ID=NO01G01080.1|Name=NO01G01080.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr1:275353..276447+ (Nannochloropsis oceanica)
ATGAATCCCCGCTGCAGCAATAGCAGTCTTAGCAGTAGCAGCCTTAGCAG
CAGGAACAACAACAACAACAACAACAATCACAACAACAACAACAACAACA
ACAACAACAACATCCATGGAGAGGGACCCTCGCGATTGCCCGTCTTTAAT
TGGCGAAACCGGCGCGACTTTGGAGAACATGATGCCCAGGGCTTGGTAGC
CGCCACTGCTGCTGGGCAACAGTACGGTAGCGAGGACGACAGCGACGGGA
GTGATGAGGAAGGAGAGAAGGAGGAAGGGGTGGTAAACGCTTTGATCATT
CTTAATACAGACTGTGTGGGTGGAGGATTATTTTACAAGTTTTGGGCGCA
TGCGAGCGTGAGGATCTGTGCGGATGGGGGGGCAAATCGTTTATATGACG
GGTTGGGAGGGGAGGAGAGGGAGCAGTTCCTCCCTTCAGCGATAAAGGGG
GATTTGGATTCAGTGCGGCCGGAAGTGGTGGCATGGTATAAAGCGAAAGG
GTGTCGTGTGGTGAAGAACGGGGATGTGGACACCAACGACCTTGAAAAAT
GCCTTGAGCTGTTAAAGCATACAGGAGAGGGAGGAAATGATCAGCGGCAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGGAACTACCGCCCTGGGAGCGCAA
GCAACATCCTACCCGGCAGAGTTTAAGAACGAACGTTTTTGTTCTCGGGG
CGCTGGGTCAGCGTTTTGATCATGCTATGGCGAGTTGTCATCTGCTTTAT
CGGTATGCAGGTGTGTTCAAACGGTTGGTATTGTTGGGGAATGAAAGCGT
GGCTTTCTTGTTGCCGGAGGGGAGGAACTGGGTGGAGCCTGATGGTAGGA
TGGAGGGGCCGCTGTGTGGCCTGATACCGCTGGGAAGACAGTGTCGGGAG
ATTAGAACGAGGGGTTTGAAGTGGGATTTGAGAGGGGAGAGTATGGAGTT
CGGGGGGCTGGTAAGCACGTCCAATGAGGTGGTGGGAGAGAGGAGGGAGG
ACGGACGGGAGGGTGTGTGGATTGAGACGTCGGATCCGGTGATATGGACG
ATGGCGTTGAAGGAGGAGTGGCGGAAAGATTTTCTGCATGTGTGA
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Synonyms
Publications