NO01G01030.1, NO01G01030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01030.1
Unique NameNO01G01030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length969
Alignment locationchr1:259834..260883 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:259834..260883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01030.1 vs.
Match: EWM29044.1 (hypothetical protein Naga_100071g16 [Nannochloropsis gaditana])

HSP 1 Score: 316.6 bits (810), Expect = 8.800e-83
Identity = 201/363 (55.37%), Postives = 239/363 (65.84%), Query Frame = 0
Query:    1 MPPSRGVVVVLILCSLFSTTFVRAFHLPS---SYSSSRTHLSLNP-LSRAYNIKNHRWRVSRSRQLHASPPAGDDSPSSKQEDDVDFFFADGFSSLLDDSTKSTSKHPKSPFEGGQTILLGSEDERSPVDELPRRGTTPPPPPISRRAMPFSSPPSTGRSSGSSNDG--GATRKKRPKRFSPPWQQE-----AAGGTGGGQQQQQAGNGT--------------------------PPPTRVYRPPGSFDLEPARGNRGG-GGGGSARQREDQQVFRLLRLFGNPNGMLFGAVALALGTVAFGWAWKSGSLENSSP---RMQDPEATAYMARNEGFPRDVDVTVTVDDKVVTLSQEGGEVDIL 323
            MPP+R  ++  +     S     AFH P    S S  R+ L +N  +S     ++HR          A+   G+++   K +D VD+FFADGFSSLLDDS  +  + PKSPFEGGQTILLGSEDER+PV ELPR+ T+PPPPPISRR +P S  PS+G S   +  G  G    KRPKRF+PPWQQ      A G  G G++ ++A  G                           PPPTRVYRPPG+FDLEP RG RGG GGGGSAR+REDQQ+FRLL +FGNPNGMLFGAVALALGTVAFGWAWKSG+LENSSP    +QDPEATAYM+R E FP+DVDVTVT+DDKVV LSQE G+VDIL
Sbjct:    1 MPPTR--LLGFLAVWFISANTAPAFHGPRPLLSASLYRSFLRVNGYMSPRVCPRSHRT---------AAQSTGEEATPEK-DDQVDYFFADGFSSLLDDSKNNAERGPKSPFEGGQTILLGSEDERAPVTELPRQATSPPPPPISRRGIPPS--PSSGGSVNDNKSGMRGRREGKRPKRFAPPWQQGSSSNFADGPGGSGRRSRRAPGGATAEGGFIPSSPPPSAGGGQGPQGNGTPPPTRVYRPPGTFDLEPGRGGRGGSGGGGSAREREDQQIFRLLNVFGNPNGMLFGAVALALGTVAFGWAWKSGALENSSPGQAMLQDPEATAYMSR-EAFPQDVDVTVTLDDKVVNLSQE-GDVDIL 347          
The following BLAST results are available for this feature:
BLAST of NO01G01030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29044.18.800e-8355.37hypothetical protein Naga_100071g16 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01030NO01G01030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01030.1NO01G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01030.1.cds1NO01G01030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01030.1.cds2NO01G01030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01030.1 ID=NO01G01030.1|Name=NO01G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=969bp
ATGCCGCCATCGCGTGGCGTCGTCGTCGTCTTGATTCTCTGCTCCCTTTT
CTCGACCACCTTCGTGCGTGCCTTCCATCTCCCTTCTTCTTACTCCTCAT
CTCGCACACACTTGTCACTTAATCCGTTGTCCAGAGCATACAACATTAAG
AACCACCGATGGAGGGTGAGCCGAAGCCGGCAATTGCATGCATCCCCGCC
CGCGGGAGACGACAGCCCATCCTCGAAGCAAGAGGACGATGTTGACTTCT
TTTTCGCTGACGGCTTCTCCTCCCTCCTGGACGATTCCACGAAAAGTACC
AGCAAGCACCCAAAATCTCCTTTTGAAGGGGGGCAGACCATATTACTAGG
TAGCGAGGACGAGCGCTCTCCCGTGGACGAGCTGCCGCGCCGGGGAACGA
CTCCACCACCTCCTCCCATTTCCAGGAGAGCGATGCCTTTCTCCTCCCCT
CCTTCAACTGGCAGAAGCAGTGGCAGTAGCAATGATGGTGGTGCGACACG
TAAGAAGCGGCCCAAACGATTTTCACCGCCATGGCAACAAGAGGCAGCTG
GTGGTACTGGTGGCGGGCAGCAGCAGCAGCAGGCCGGAAACGGTACGCCA
CCACCAACGCGCGTATATCGCCCTCCTGGAAGTTTCGATCTGGAGCCTGC
TCGTGGCAACCGGGGTGGAGGTGGAGGAGGCAGTGCGCGTCAACGGGAGG
ACCAACAAGTCTTTCGTTTGCTTCGACTATTTGGGAATCCTAACGGAATG
CTATTTGGTGCTGTTGCGCTCGCTCTAGGTACGGTTGCTTTCGGGTGGGC
ATGGAAGAGTGGCTCGCTGGAGAACTCGTCTCCGAGGATGCAGGACCCTG
AGGCGACTGCTTACATGGCCAGGAATGAGGGTTTCCCGCGGGACGTCGAC
GTAACGGTTACTGTGGATGATAAAGTCGTGACTTTGTCACAGGAGGGGGG
AGAGGTCGACATTCTTTGA
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protein sequence of NO01G01030.1

>NO01G01030.1-protein ID=NO01G01030.1-protein|Name=NO01G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MPPSRGVVVVLILCSLFSTTFVRAFHLPSSYSSSRTHLSLNPLSRAYNIK
NHRWRVSRSRQLHASPPAGDDSPSSKQEDDVDFFFADGFSSLLDDSTKST
SKHPKSPFEGGQTILLGSEDERSPVDELPRRGTTPPPPPISRRAMPFSSP
PSTGRSSGSSNDGGATRKKRPKRFSPPWQQEAAGGTGGGQQQQQAGNGTP
PPTRVYRPPGSFDLEPARGNRGGGGGGSARQREDQQVFRLLRLFGNPNGM
LFGAVALALGTVAFGWAWKSGSLENSSPRMQDPEATAYMARNEGFPRDVD
VTVTVDDKVVTLSQEGGEVDIL*
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mRNA from alignment at chr1:259834..260883+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01030.1 ID=NO01G01030.1|Name=NO01G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at chr1:259834..260883+ (Nannochloropsis oceanica)
ATGCCGCCATCGCGTGGCGTCGTCGTCGTCTTGATTCTCTGCTCCCTTTT CTCGACCACCTTCGTGCGTGCCTTCCATCTCCCTTCTTCTTACTCCTCAT CTCGCACACACTTGTCACTTAATCCGTTGTCCAGAGCATACAACATTAAG AACCACCGATGGAGGGTGAGCCGAAGCCGGCAATTGCATGCATCCCCGCC CGCGGGAGACGACAGCCCATCCTCGAAGCAAGAGGACGATGTTGACTTCT TTTTCGCTGACGGCTTCTCCTCCCTCCTGGACGATTCCACGAAAAGTACC AGCAAGCACCCAAAATCTCCTTTTGAAGGGGGGCAGACCATATTACTAGG TAGCGAGGACGAGCGCTCTCCCGTGGACGAGCTGCCGCGCCGGGGAACGA CTCCACCACCTCCTCCCATTTCCAGGAGAGCGATGCCTTTCTCCTCCCCT CCTTCAACTGGCAGAAGCAGTGGCAGTAGCAATGATGGTGGTGCGACACG TAAGAAGCGGCCCAAACGATTTTCACCGCCATGGCAACAAGAGGCAGGTG AGGGTGGTCGTGGCTCAACCTTTCGCGGGGGTCCTGTGCAAGACAAAAAT GGCTTCATTCCATCCACTCCTCCTCCAGCTGGTGGTACTGGTGGCGGGCA GCAGCAGCAGCAGGCCGGAAACGGTACGCCACCACCAACGCGCGTATATC GCCCTCCTGGAAGTTTCGATCTGGAGCCTGCTCGTGGCAACCGGGGTGGA GGTGGAGGAGGCAGTGCGCGTCAACGGGAGGACCAACAAGTCTTTCGTTT GCTTCGACTATTTGGGAATCCTAACGGAATGCTATTTGGTGCTGTTGCGC TCGCTCTAGGTACGGTTGCTTTCGGGTGGGCATGGAAGAGTGGCTCGCTG GAGAACTCGTCTCCGAGGATGCAGGACCCTGAGGCGACTGCTTACATGGC CAGGAATGAGGGTTTCCCGCGGGACGTCGACGTAACGGTTACTGTGGATG ATAAAGTCGTGACTTTGTCACAGGAGGGGGGAGAGGTCGACATTCTTTGA
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Coding sequence (CDS) from alignment at chr1:259834..260883+

>NO01G01030.1 ID=NO01G01030.1|Name=NO01G01030.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr1:259834..260883+ (Nannochloropsis oceanica)
ATGCCGCCATCGCGTGGCGTCGTCGTCGTCTTGATTCTCTGCTCCCTTTT
CTCGACCACCTTCGTGCGTGCCTTCCATCTCCCTTCTTCTTACTCCTCAT
CTCGCACACACTTGTCACTTAATCCGTTGTCCAGAGCATACAACATTAAG
AACCACCGATGGAGGGTGAGCCGAAGCCGGCAATTGCATGCATCCCCGCC
CGCGGGAGACGACAGCCCATCCTCGAAGCAAGAGGACGATGTTGACTTCT
TTTTCGCTGACGGCTTCTCCTCCCTCCTGGACGATTCCACGAAAAGTACC
AGCAAGCACCCAAAATCTCCTTTTGAAGGGGGGCAGACCATATTACTAGG
TAGCGAGGACGAGCGCTCTCCCGTGGACGAGCTGCCGCGCCGGGGAACGA
CTCCACCACCTCCTCCCATTTCCAGGAGAGCGATGCCTTTCTCCTCCCCT
CCTTCAACTGGCAGAAGCAGTGGCAGTAGCAATGATGGTGGTGCGACACG
TAAGAAGCGGCCCAAACGATTTTCACCGCCATGGCAACAAGAGGCAGCTG
GTGGTACTGGTGGCGGGCAGCAGCAGCAGCAGGCCGGAAACGGTACGCCA
CCACCAACGCGCGTATATCGCCCTCCTGGAAGTTTCGATCTGGAGCCTGC
TCGTGGCAACCGGGGTGGAGGTGGAGGAGGCAGTGCGCGTCAACGGGAGG
ACCAACAAGTCTTTCGTTTGCTTCGACTATTTGGGAATCCTAACGGAATG
CTATTTGGTGCTGTTGCGCTCGCTCTAGGTACGGTTGCTTTCGGGTGGGC
ATGGAAGAGTGGCTCGCTGGAGAACTCGTCTCCGAGGATGCAGGACCCTG
AGGCGACTGCTTACATGGCCAGGAATGAGGGTTTCCCGCGGGACGTCGAC
GTAACGGTTACTGTGGATGATAAAGTCGTGACTTTGTCACAGGAGGGGGG
AGAGGTCGACATTCTTTGA
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Synonyms
Publications