NO01G01020.1, NO01G01020.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G01020.1
Unique Name	NO01G01020.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2055
Alignment location	chr1:257213..259267 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:257213..259267 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G01020.1 vs.
Match: EWM29039.1 (nucleolar gtp-binding protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 876.7 bits (2264), Expect = 4.700e-251
Identity = 488/628 (77.71%), Postives = 542/628 (86.31%), Query Frame = 0

Query:    1 MGKSKGSALSSSKSSDNPNRKASDVKYKGGNLRDRATINRLQMYRGGKPIRNKKGKIVGGVLMMRNKVGGQAITGATGRTQPDRRWFGNTRVISQVDLDRFREEMTTRAADPFSVILRRKKIPMGLLVDTEKVQRMNLLQTETYQATFGAKSTRKRPKLSAGVMEAAMGGVAGGSGVGGDYASLLERVNVDQAKYQAPGHTDGALVEEAEFRVERRHDLFDKGQSRRIWGELYKVIDCSDVVIQVLDARNIPGTRCDHLEKHLKKNASHKHLILIVNKCDLVPAWVVRRWVKILSASYPTLAFHASITNSFGKGSLINLLRQYAKLHQDKKQISVGVVGYPNVGKSSIINTLKSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGIVYDTGDDETAIVLKGVVRAERLPDPTEFIAPILELVKPEYMVRTYGIKEWKDALDFMTKVAKRTGKLVKGGEPDLNNVAVSIINDFQRGKLPHFVAPPPKEGE--EEG-DEAGEEDWI-----EGGLVELAADAAEKEEEEDDGDGNEEENEEEEEAEDEEEEEEEVEVEEEEEEEDASEDEEEEDKKEEGEEAEKAQVIVEKAAQRSSK---RGGSRTAVARAIK-KPSAARTTTAKVGS 617
            MGK KGS+LSSSKSSDNPNRKASDVK+KGG LRDRATINRLQMYRGGKPIRNKKGK+VGG LMM++KVGGQAITGATGR QPDRRWFGNTRVISQ DLDRFREEMTTRAADPFS++LRRKKIPMGLLVD+EK QRMNLLQTE++QATFGAKSTRKRPKLS+GV EAA  GV  G+G   DYASLL+RV V+QAKYQAP H DGALVEE ++RVERRHDLFDKGQSRRIWGELYKVIDCSDVVIQVLDARNIPGTRC HLE+HLKKNASHKHLILIVNKCDLVPAWVVRRWV++LS  YPTLAFHASITN+FGKGSLINLLRQYAKLHQDKKQISVGVVGYPNVGKSSIINTLKSKKVCKVAP+PGETKVWQYITLMKRIYLIDCPGIVYDTGDDETAIVLKGVVRAERLPDPTEF+  ILE VK EY+VRTYG++EW DA DFMTK+AK+TGKLVKGGEPDLN VAVS+INDFQRGKLPHFV PP KEGE  EEG +E G E W      +GG+ E   D  + EEEE++ D  EEE EEEEE E+EEEEEEE E EEEEEE++ +E E+E+++ +E E+ E+ +V   K A +  +    G  R   AR  + + +A +T+T   G+
Sbjct:    1 MGKPKGSSLSSSKSSDNPNRKASDVKHKGGKLRDRATINRLQMYRGGKPIRNKKGKVVGGTLMMKDKVGGQAITGATGRVQPDRRWFGNTRVISQEDLDRFREEMTTRAADPFSIVLRRKKIPMGLLVDSEKAQRMNLLQTESFQATFGAKSTRKRPKLSSGVTEAAPRGVPSGNG---DYASLLQRVEVEQAKYQAPEHADGALVEELDYRVERRHDLFDKGQSRRIWGELYKVIDCSDVVIQVLDARNIPGTRCAHLERHLKKNASHKHLILIVNKCDLVPAWVVRRWVRLLSQHYPTLAFHASITNAFGKGSLINLLRQYAKLHQDKKQISVGVVGYPNVGKSSIINTLKSKKVCKVAPVPGETKVWQYITLMKRIYLIDCPGIVYDTGDDETAIVLKGVVRAERLPDPTEFVPAILEEVKREYVVRTYGVREWDDAQDFMTKLAKKTGKLVKGGEPDLNTVAVSLINDFQRGKLPHFVPPPVKEGEEGEEGEEEGGLEVWAAEAKGQGGVGEREKDEEDNEEEEEEED-EEEEEEEEEEEEEEEEEEEEEEKEEEEEEDNLAEVEQEKEENDENEKEEEEEVEEVKMADKGKQPRVSGVRRAKQARGDEGEKTACKTSTRTKGT 624

The following BLAST results are available for this feature:

BLAST of NO01G01020.1 vs.

BLAST of NO01G01020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29039.1	4.700e-251	77.71	nucleolar gtp-binding protein 2 [Nannochloropsis g...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G01020	NO01G01020	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G01020.1	NO01G01020.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G01020.1.cds1	NO01G01020.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:257213..259267-
coding sequence from alignment at chr1:257213..259267-

mRNA sequence

>NO01G01020.1 ID=NO01G01020.1|Name=NO01G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2055bp
ATGGGGAAATCAAAAGGGAGCGCGCTCAGCTCCTCCAAGAGCAGCGACAA
CCCTAACCGAAAGGCCTCGGATGTCAAGTACAAGGGTGGAAATCTCCGCG
ACCGGGCCACCATCAACCGCCTCCAGATGTACCGGGGCGGCAAGCCCATC
CGCAACAAGAAAGGCAAAATTGTTGGGGGGGTGCTTATGATGCGGAATAA
GGTCGGCGGACAAGCCATCACGGGCGCCACCGGGCGGACGCAGCCGGACC
GACGCTGGTTTGGTAACACCCGCGTGATTTCGCAGGTGGACTTGGACAGA
TTCCGGGAGGAGATGACGACGCGGGCCGCGGATCCTTTTAGTGTAATCTT
GCGACGCAAAAAGATCCCAATGGGCCTGTTAGTGGACACCGAAAAGGTGC
AACGCATGAATTTGTTGCAGACCGAGACATATCAGGCGACGTTCGGGGCC
AAGTCGACGCGGAAGCGACCCAAGCTCTCGGCAGGGGTGATGGAGGCGGC
CATGGGGGGTGTGGCAGGCGGGTCGGGCGTCGGAGGGGATTACGCTTCTT
TGCTTGAGCGCGTAAATGTCGACCAGGCCAAATACCAAGCGCCGGGGCAC
ACGGATGGGGCATTGGTCGAGGAGGCTGAATTTAGGGTGGAGCGGCGGCA
TGATTTATTCGACAAAGGCCAAAGTCGGAGGATTTGGGGGGAGCTGTACA
AGGTTATTGATTGCTCAGATGTCGTCATTCAAGTCTTGGACGCCCGCAAC
ATCCCTGGTACCCGTTGTGACCACTTGGAGAAGCATTTGAAGAAGAATGC
GAGTCATAAGCATTTGATTCTCATCGTCAACAAATGTGACCTGGTTCCTG
CGTGGGTCGTCCGTCGATGGGTGAAGATCCTGTCGGCCTCCTACCCTACC
CTTGCCTTCCACGCCTCCATCACCAACTCCTTCGGGAAAGGCAGCCTGAT
CAACCTCCTTCGACAATACGCTAAGCTCCACCAGGACAAGAAGCAGATCT
CCGTGGGTGTGGTGGGCTATCCCAACGTAGGGAAGTCGTCCATCATCAAC
ACATTGAAGAGTAAGAAGGTATGCAAAGTGGCCCCTATCCCGGGGGAGAC
CAAAGTTTGGCAGTACATCACCTTAATGAAGCGAATTTACCTGATCGACT
GTCCTGGCATAGTGTATGACACGGGCGATGATGAGACGGCCATCGTGCTC
AAGGGCGTGGTGCGCGCCGAGCGTCTGCCGGACCCGACGGAGTTTATTGC
TCCTATCTTGGAGCTGGTCAAGCCGGAATATATGGTGCGGACGTATGGAA
TCAAGGAGTGGAAGGATGCGCTAGATTTCATGACCAAGGTAGCAAAGAGG
ACGGGGAAGTTGGTGAAGGGGGGAGAACCTGATTTGAATAATGTGGCTGT
GTCGATTATCAATGATTTTCAACGTGGGAAACTACCTCATTTCGTGGCAC
CTCCGCCCAAGGAGGGGGAAGAGGAAGGAGATGAGGCGGGGGAGGAGGAC
TGGATAGAAGGGGGGTTGGTGGAGCTGGCTGCGGACGCGGCAGAGAAGGA
AGAGGAGGAGGATGACGGGGATGGGAATGAAGAGGAGAACGAAGAGGAGG
AGGAAGCGGAGGATGAGGAAGAAGAAGAAGAAGAAGTAGAAGTAGAAGAG
GAAGAAGAGGAGGAGGATGCATCTGAGGATGAGGAGGAGGAGGACAAGAA
GGAGGAGGGGGAGGAGGCCGAGAAGGCACAGGTGATTGTGGAAAAAGCTG
CGCAGCGCTCCAGCAAGCGAGGGGGAAGTCGGACTGCGGTCGCGCGTGCC
ATCAAGAAGCCGTCCGCTGCTCGCACCACCACCGCCAAGGTTGGAAGCTT
AAAGAAAGATTCCACGGCCACCATCAGCACCACCACTACCAGAGGTAAAA
TCATGAACAAGGGCAATCCAATTGCAGCAGTTAAAAAGAAGGCGGTTGCT
CGACAGCAGAAGATGCAAGAGCTGCAGCAGCAACAGCCGCAGCTGAAAAA
GAAGAGAGGATTGGAGGTGGCAGTGGAGGCTCCGGCTAGCTGGGATGACC
TATAG

protein sequence of NO01G01020.1

>NO01G01020.1-protein ID=NO01G01020.1-protein|Name=NO01G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=685bp
MGKSKGSALSSSKSSDNPNRKASDVKYKGGNLRDRATINRLQMYRGGKPI
RNKKGKIVGGVLMMRNKVGGQAITGATGRTQPDRRWFGNTRVISQVDLDR
FREEMTTRAADPFSVILRRKKIPMGLLVDTEKVQRMNLLQTETYQATFGA
KSTRKRPKLSAGVMEAAMGGVAGGSGVGGDYASLLERVNVDQAKYQAPGH
TDGALVEEAEFRVERRHDLFDKGQSRRIWGELYKVIDCSDVVIQVLDARN
IPGTRCDHLEKHLKKNASHKHLILIVNKCDLVPAWVVRRWVKILSASYPT
LAFHASITNSFGKGSLINLLRQYAKLHQDKKQISVGVVGYPNVGKSSIIN
TLKSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGIVYDTGDDETAIVL
KGVVRAERLPDPTEFIAPILELVKPEYMVRTYGIKEWKDALDFMTKVAKR
TGKLVKGGEPDLNNVAVSIINDFQRGKLPHFVAPPPKEGEEEGDEAGEED
WIEGGLVELAADAAEKEEEEDDGDGNEEENEEEEEAEDEEEEEEEVEVEE
EEEEEDASEDEEEEDKKEEGEEAEKAQVIVEKAAQRSSKRGGSRTAVARA
IKKPSAARTTTAKVGSLKKDSTATISTTTTRGKIMNKGNPIAAVKKKAVA
RQQKMQELQQQQPQLKKKRGLEVAVEAPASWDDL*

mRNA from alignment at chr1:257213..259267-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G01020.1 ID=NO01G01020.1|Name=NO01G01020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2055bp|location=Sequence derived from alignment at chr1:257213..259267- (Nannochloropsis oceanica)
ATGGGGAAATCAAAAGGGAGCGCGCTCAGCTCCTCCAAGAGCAGCGACAA
CCCTAACCGAAAGGCCTCGGATGTCAAGTACAAGGGTGGAAATCTCCGCG
ACCGGGCCACCATCAACCGCCTCCAGATGTACCGGGGCGGCAAGCCCATC
CGCAACAAGAAAGGCAAAATTGTTGGGGGGGTGCTTATGATGCGGAATAA
GGTCGGCGGACAAGCCATCACGGGCGCCACCGGGCGGACGCAGCCGGACC
GACGCTGGTTTGGTAACACCCGCGTGATTTCGCAGGTGGACTTGGACAGA
TTCCGGGAGGAGATGACGACGCGGGCCGCGGATCCTTTTAGTGTAATCTT
GCGACGCAAAAAGATCCCAATGGGCCTGTTAGTGGACACCGAAAAGGTGC
AACGCATGAATTTGTTGCAGACCGAGACATATCAGGCGACGTTCGGGGCC
AAGTCGACGCGGAAGCGACCCAAGCTCTCGGCAGGGGTGATGGAGGCGGC
CATGGGGGGTGTGGCAGGCGGGTCGGGCGTCGGAGGGGATTACGCTTCTT
TGCTTGAGCGCGTAAATGTCGACCAGGCCAAATACCAAGCGCCGGGGCAC
ACGGATGGGGCATTGGTCGAGGAGGCTGAATTTAGGGTGGAGCGGCGGCA
TGATTTATTCGACAAAGGCCAAAGTCGGAGGATTTGGGGGGAGCTGTACA
AGGTTATTGATTGCTCAGATGTCGTCATTCAAGTCTTGGACGCCCGCAAC
ATCCCTGGTACCCGTTGTGACCACTTGGAGAAGCATTTGAAGAAGAATGC
GAGTCATAAGCATTTGATTCTCATCGTCAACAAATGTGACCTGGTTCCTG
CGTGGGTCGTCCGTCGATGGGTGAAGATCCTGTCGGCCTCCTACCCTACC
CTTGCCTTCCACGCCTCCATCACCAACTCCTTCGGGAAAGGCAGCCTGAT
CAACCTCCTTCGACAATACGCTAAGCTCCACCAGGACAAGAAGCAGATCT
CCGTGGGTGTGGTGGGCTATCCCAACGTAGGGAAGTCGTCCATCATCAAC
ACATTGAAGAGTAAGAAGGTATGCAAAGTGGCCCCTATCCCGGGGGAGAC
CAAAGTTTGGCAGTACATCACCTTAATGAAGCGAATTTACCTGATCGACT
GTCCTGGCATAGTGTATGACACGGGCGATGATGAGACGGCCATCGTGCTC
AAGGGCGTGGTGCGCGCCGAGCGTCTGCCGGACCCGACGGAGTTTATTGC
TCCTATCTTGGAGCTGGTCAAGCCGGAATATATGGTGCGGACGTATGGAA
TCAAGGAGTGGAAGGATGCGCTAGATTTCATGACCAAGGTAGCAAAGAGG
ACGGGGAAGTTGGTGAAGGGGGGAGAACCTGATTTGAATAATGTGGCTGT
GTCGATTATCAATGATTTTCAACGTGGGAAACTACCTCATTTCGTGGCAC
CTCCGCCCAAGGAGGGGGAAGAGGAAGGAGATGAGGCGGGGGAGGAGGAC
TGGATAGAAGGGGGGTTGGTGGAGCTGGCTGCGGACGCGGCAGAGAAGGA
AGAGGAGGAGGATGACGGGGATGGGAATGAAGAGGAGAACGAAGAGGAGG
AGGAAGCGGAGGATGAGGAAGAAGAAGAAGAAGAAGTAGAAGTAGAAGAG
GAAGAAGAGGAGGAGGATGCATCTGAGGATGAGGAGGAGGAGGACAAGAA
GGAGGAGGGGGAGGAGGCCGAGAAGGCACAGGTGATTGTGGAAAAAGCTG
CGCAGCGCTCCAGCAAGCGAGGGGGAAGTCGGACTGCGGTCGCGCGTGCC
ATCAAGAAGCCGTCCGCTGCTCGCACCACCACCGCCAAGGTTGGAAGCTT
AAAGAAAGATTCCACGGCCACCATCAGCACCACCACTACCAGAGGTAAAA
TCATGAACAAGGGCAATCCAATTGCAGCAGTTAAAAAGAAGGCGGTTGCT
CGACAGCAGAAGATGCAAGAGCTGCAGCAGCAACAGCCGCAGCTGAAAAA
GAAGAGAGGATTGGAGGTGGCAGTGGAGGCTCCGGCTAGCTGGGATGACC
TATAG

Coding sequence (CDS) from alignment at chr1:257213..259267-

>NO01G01020.1 ID=NO01G01020.1|Name=NO01G01020.1|organism=Nannochloropsis oceanica|type=CDS|length=2055bp|location=Sequence derived from alignment at chr1:257213..259267- (Nannochloropsis oceanica)
ATGGGGAAATCAAAAGGGAGCGCGCTCAGCTCCTCCAAGAGCAGCGACAA
CCCTAACCGAAAGGCCTCGGATGTCAAGTACAAGGGTGGAAATCTCCGCG
ACCGGGCCACCATCAACCGCCTCCAGATGTACCGGGGCGGCAAGCCCATC
CGCAACAAGAAAGGCAAAATTGTTGGGGGGGTGCTTATGATGCGGAATAA
GGTCGGCGGACAAGCCATCACGGGCGCCACCGGGCGGACGCAGCCGGACC
GACGCTGGTTTGGTAACACCCGCGTGATTTCGCAGGTGGACTTGGACAGA
TTCCGGGAGGAGATGACGACGCGGGCCGCGGATCCTTTTAGTGTAATCTT
GCGACGCAAAAAGATCCCAATGGGCCTGTTAGTGGACACCGAAAAGGTGC
AACGCATGAATTTGTTGCAGACCGAGACATATCAGGCGACGTTCGGGGCC
AAGTCGACGCGGAAGCGACCCAAGCTCTCGGCAGGGGTGATGGAGGCGGC
CATGGGGGGTGTGGCAGGCGGGTCGGGCGTCGGAGGGGATTACGCTTCTT
TGCTTGAGCGCGTAAATGTCGACCAGGCCAAATACCAAGCGCCGGGGCAC
ACGGATGGGGCATTGGTCGAGGAGGCTGAATTTAGGGTGGAGCGGCGGCA
TGATTTATTCGACAAAGGCCAAAGTCGGAGGATTTGGGGGGAGCTGTACA
AGGTTATTGATTGCTCAGATGTCGTCATTCAAGTCTTGGACGCCCGCAAC
ATCCCTGGTACCCGTTGTGACCACTTGGAGAAGCATTTGAAGAAGAATGC
GAGTCATAAGCATTTGATTCTCATCGTCAACAAATGTGACCTGGTTCCTG
CGTGGGTCGTCCGTCGATGGGTGAAGATCCTGTCGGCCTCCTACCCTACC
CTTGCCTTCCACGCCTCCATCACCAACTCCTTCGGGAAAGGCAGCCTGAT
CAACCTCCTTCGACAATACGCTAAGCTCCACCAGGACAAGAAGCAGATCT
CCGTGGGTGTGGTGGGCTATCCCAACGTAGGGAAGTCGTCCATCATCAAC
ACATTGAAGAGTAAGAAGGTATGCAAAGTGGCCCCTATCCCGGGGGAGAC
CAAAGTTTGGCAGTACATCACCTTAATGAAGCGAATTTACCTGATCGACT
GTCCTGGCATAGTGTATGACACGGGCGATGATGAGACGGCCATCGTGCTC
AAGGGCGTGGTGCGCGCCGAGCGTCTGCCGGACCCGACGGAGTTTATTGC
TCCTATCTTGGAGCTGGTCAAGCCGGAATATATGGTGCGGACGTATGGAA
TCAAGGAGTGGAAGGATGCGCTAGATTTCATGACCAAGGTAGCAAAGAGG
ACGGGGAAGTTGGTGAAGGGGGGAGAACCTGATTTGAATAATGTGGCTGT
GTCGATTATCAATGATTTTCAACGTGGGAAACTACCTCATTTCGTGGCAC
CTCCGCCCAAGGAGGGGGAAGAGGAAGGAGATGAGGCGGGGGAGGAGGAC
TGGATAGAAGGGGGGTTGGTGGAGCTGGCTGCGGACGCGGCAGAGAAGGA
AGAGGAGGAGGATGACGGGGATGGGAATGAAGAGGAGAACGAAGAGGAGG
AGGAAGCGGAGGATGAGGAAGAAGAAGAAGAAGAAGTAGAAGTAGAAGAG
GAAGAAGAGGAGGAGGATGCATCTGAGGATGAGGAGGAGGAGGACAAGAA
GGAGGAGGGGGAGGAGGCCGAGAAGGCACAGGTGATTGTGGAAAAAGCTG
CGCAGCGCTCCAGCAAGCGAGGGGGAAGTCGGACTGCGGTCGCGCGTGCC
ATCAAGAAGCCGTCCGCTGCTCGCACCACCACCGCCAAGGTTGGAAGCTT
AAAGAAAGATTCCACGGCCACCATCAGCACCACCACTACCAGAGGTAAAA
TCATGAACAAGGGCAATCCAATTGCAGCAGTTAAAAAGAAGGCGGTTGCT
CGACAGCAGAAGATGCAAGAGCTGCAGCAGCAACAGCCGCAGCTGAAAAA
GAAGAGAGGATTGGAGGTGGCAGTGGAGGCTCCGGCTAGCTGGGATGACC
TATAG

Synonyms

Publications