NO01G01010.1, NO01G01010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01010.1
Unique NameNO01G01010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1656
Alignment locationchr1:254990..256645 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:254990..256645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G01010.1 vs.
Match: CBN77197.1 (Hypothetical leucine rich repeat protein [Ectocarpus siliculosus])

HSP 1 Score: 75.9 bits (185), Expect = 4.500e-10
Identity = 78/238 (32.77%), Postives = 106/238 (44.54%), Query Frame = 0 
Query:  212 GGGRERKERGNEDEAKGPR-------LPQLGVAGLRELRLGQNILQGRGSAQVLSAALECPGRPGTKQPLERLILDDCYMGDEGLAFFAEASLCSGQFCSLRELHLQNNRCGEGGARALGKACVEGLPALEFLGLQMNMMGNVGALALVEGMVGEEEDDGGEGGEGRDMARWEKMKEAVVKKEGDKRSLPRLKRLDLSHNMIDALGVERFSKLLLGSGRCPS-----LEELDLTHNAV 438
            G G  R+E   E EA+G +       LP    +G+R L L  N   G   A+ L++AL+          L+ L L  C +GD+G    A A   +     LREL L  N     GA AL      G  ALE L LQ N +G+ GA+AL +G+VG        GG  R  A     K+ +  + G     P L+ L+L+ N I   G    +K L+G           LEEL+L  NA+
Sbjct:  218 GSGAGREEEEEEAEAEGEKKGGAEVVLPPPVASGIRRLLLTGNDRLGDAGAKALASALK------KDNSLQVLDLTRCKIGDDGARCLANALRSNS---CLRELRLGYNDISADGALALASLLHAGSSALECLELQGNHVGDAGAVALADGLVG----GNNRGGRRRGGA----SKQGISSRRG-----PGLRSLNLAGNGIGCAGGGALAKALVGGKGGGGEGGVVLEELELAGNAL 433
The following BLAST results are available for this feature:
BLAST of NO01G01010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN77197.14.500e-1032.77Hypothetical leucine rich repeat protein [Ectocarp... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01010NO01G01010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01010.1NO01G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01010.1.cds1NO01G01010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01010.1 ID=NO01G01010.1|Name=NO01G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp
ATGGCAACTCCAAAAGATCATGAAGATCGTAGCTGCCTCCTCCCCCTGAC
CATCTTGCACCAATCCCGCGCATTGGCCACTTGTCTACACGCCAATGACC
TGTCTCACCTCTCCCTCAGTAACCGTGCCTGCCGGTCCTTCTGGCCGCAA
GTCCAGTCCTTGCACGTCCCGTTCTTCCAGTACTCTCTCCTTTCAAGGCA
CGCCGTCAACAAGGCAAGGACGGACGGTTTCCGTCGCGCCTGCCAAGAAG
GCCAGCTCAAGCACCTAGTAAACCTGTCCCTGAACGGAGCTAACTTGGAG
GATAAGGACTTTGAACGTCTCGCCAGTGACATTTTGCCCTACCTGCCTCA
GCTTGAGACCCTGGACGTAGGAAACAATCCCTCCCTCCTGTCCCTTGGAC
TCAACTACCTCGCCTGCAGCCCCAACGCCTTGCCGTCTAATCTCCGCGAC
CTCAGGCTGGCGCATAATCCCAACATGTGTCGGGGAGCGTACGGTGGTGC
ACACCTAGGGCGGCTCTTAATTCAGCTGTGGCCACGCTTGGAGTGCTTGG
ACTTGACGCAGACCGGAGTGACGGAGGACACCCTCAGGATTGCGGTCGAC
CTTTTAAAATGTTTGACGGAGCTTAGAGAAGGTGGGGGCGGTAGAGAAAG
GAAAGAAAGAGGAAACGAAGACGAAGCAAAAGGGCCGCGGCTTCCCCAGC
TTGGAGTTGCCGGTCTACGCGAGCTCCGGCTAGGCCAAAATATATTGCAG
GGACGAGGGAGCGCCCAGGTATTGTCAGCGGCTTTAGAATGCCCTGGCAG
GCCTGGAACGAAGCAGCCCCTGGAACGTCTGATCTTAGACGACTGCTATA
TGGGCGATGAGGGCTTGGCGTTCTTCGCGGAAGCTTCGCTGTGTTCGGGT
CAATTTTGCTCGCTTCGTGAATTGCACTTGCAGAACAATCGGTGCGGTGA
GGGGGGCGCGCGGGCGCTGGGGAAGGCGTGTGTAGAGGGCTTACCAGCTC
TGGAGTTTTTGGGGCTGCAGATGAATATGATGGGGAACGTGGGAGCCTTA
GCCCTTGTGGAGGGGATGGTGGGCGAGGAGGAGGATGACGGGGGGGAGGG
AGGGGAGGGGAGGGATATGGCGAGGTGGGAGAAAATGAAGGAAGCGGTGG
TAAAAAAGGAAGGGGATAAAAGAAGTCTGCCAAGATTAAAACGACTGGAT
TTGTCGCATAATATGATTGATGCATTGGGGGTCGAGAGATTTTCGAAGTT
ACTGTTGGGATCGGGCCGTTGCCCTTCTCTCGAGGAGCTCGATCTTACGC
ACAATGCTGTGCGGGAGAAAGAGGCTTGGGAGTTGCAGCGTGCCATCCAC
TTCTGCAGCAGCAGAAGCAGCACCACTATCTCCGCCTTGACAAAAGCCGG
TAGCACGACTACGATTACCACCGTCACGACCTTTTTTTTACAGGGAGAAA
ATAAAGAGACTGAAGTCAAAGTGCGGTTGAGCCCAGGGTTGTACTGCCAG
GTGCTGCTCGAGGGGGAGGAGGAGGAGGAGGAGGTGGGAAGGAGGGGGAG
AGGGGACACGGGGAAATCGGATGCATTAGTCTACAGGCTGATGTTGTCCG
TCTCCGATCTCGTCGATTTTGCCTTTGATTTGTGTGTGGGAGAAGACGAA
GAGTAG
back to top

protein sequence of NO01G01010.1

>NO01G01010.1-protein ID=NO01G01010.1-protein|Name=NO01G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=552bp
MATPKDHEDRSCLLPLTILHQSRALATCLHANDLSHLSLSNRACRSFWPQ
VQSLHVPFFQYSLLSRHAVNKARTDGFRRACQEGQLKHLVNLSLNGANLE
DKDFERLASDILPYLPQLETLDVGNNPSLLSLGLNYLACSPNALPSNLRD
LRLAHNPNMCRGAYGGAHLGRLLIQLWPRLECLDLTQTGVTEDTLRIAVD
LLKCLTELREGGGGRERKERGNEDEAKGPRLPQLGVAGLRELRLGQNILQ
GRGSAQVLSAALECPGRPGTKQPLERLILDDCYMGDEGLAFFAEASLCSG
QFCSLRELHLQNNRCGEGGARALGKACVEGLPALEFLGLQMNMMGNVGAL
ALVEGMVGEEEDDGGEGGEGRDMARWEKMKEAVVKKEGDKRSLPRLKRLD
LSHNMIDALGVERFSKLLLGSGRCPSLEELDLTHNAVREKEAWELQRAIH
FCSSRSSTTISALTKAGSTTTITTVTTFFLQGENKETEVKVRLSPGLYCQ
VLLEGEEEEEEVGRRGRGDTGKSDALVYRLMLSVSDLVDFAFDLCVGEDE
E*
back to top

mRNA from alignment at chr1:254990..256645+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01010.1 ID=NO01G01010.1|Name=NO01G01010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp|location=Sequence derived from alignment at chr1:254990..256645+ (Nannochloropsis oceanica)
ATGGCAACTCCAAAAGATCATGAAGATCGTAGCTGCCTCCTCCCCCTGAC
CATCTTGCACCAATCCCGCGCATTGGCCACTTGTCTACACGCCAATGACC
TGTCTCACCTCTCCCTCAGTAACCGTGCCTGCCGGTCCTTCTGGCCGCAA
GTCCAGTCCTTGCACGTCCCGTTCTTCCAGTACTCTCTCCTTTCAAGGCA
CGCCGTCAACAAGGCAAGGACGGACGGTTTCCGTCGCGCCTGCCAAGAAG
GCCAGCTCAAGCACCTAGTAAACCTGTCCCTGAACGGAGCTAACTTGGAG
GATAAGGACTTTGAACGTCTCGCCAGTGACATTTTGCCCTACCTGCCTCA
GCTTGAGACCCTGGACGTAGGAAACAATCCCTCCCTCCTGTCCCTTGGAC
TCAACTACCTCGCCTGCAGCCCCAACGCCTTGCCGTCTAATCTCCGCGAC
CTCAGGCTGGCGCATAATCCCAACATGTGTCGGGGAGCGTACGGTGGTGC
ACACCTAGGGCGGCTCTTAATTCAGCTGTGGCCACGCTTGGAGTGCTTGG
ACTTGACGCAGACCGGAGTGACGGAGGACACCCTCAGGATTGCGGTCGAC
CTTTTAAAATGTTTGACGGAGCTTAGAGAAGGTGGGGGCGGTAGAGAAAG
GAAAGAAAGAGGAAACGAAGACGAAGCAAAAGGGCCGCGGCTTCCCCAGC
TTGGAGTTGCCGGTCTACGCGAGCTCCGGCTAGGCCAAAATATATTGCAG
GGACGAGGGAGCGCCCAGGTATTGTCAGCGGCTTTAGAATGCCCTGGCAG
GCCTGGAACGAAGCAGCCCCTGGAACGTCTGATCTTAGACGACTGCTATA
TGGGCGATGAGGGCTTGGCGTTCTTCGCGGAAGCTTCGCTGTGTTCGGGT
CAATTTTGCTCGCTTCGTGAATTGCACTTGCAGAACAATCGGTGCGGTGA
GGGGGGCGCGCGGGCGCTGGGGAAGGCGTGTGTAGAGGGCTTACCAGCTC
TGGAGTTTTTGGGGCTGCAGATGAATATGATGGGGAACGTGGGAGCCTTA
GCCCTTGTGGAGGGGATGGTGGGCGAGGAGGAGGATGACGGGGGGGAGGG
AGGGGAGGGGAGGGATATGGCGAGGTGGGAGAAAATGAAGGAAGCGGTGG
TAAAAAAGGAAGGGGATAAAAGAAGTCTGCCAAGATTAAAACGACTGGAT
TTGTCGCATAATATGATTGATGCATTGGGGGTCGAGAGATTTTCGAAGTT
ACTGTTGGGATCGGGCCGTTGCCCTTCTCTCGAGGAGCTCGATCTTACGC
ACAATGCTGTGCGGGAGAAAGAGGCTTGGGAGTTGCAGCGTGCCATCCAC
TTCTGCAGCAGCAGAAGCAGCACCACTATCTCCGCCTTGACAAAAGCCGG
TAGCACGACTACGATTACCACCGTCACGACCTTTTTTTTACAGGGAGAAA
ATAAAGAGACTGAAGTCAAAGTGCGGTTGAGCCCAGGGTTGTACTGCCAG
GTGCTGCTCGAGGGGGAGGAGGAGGAGGAGGAGGTGGGAAGGAGGGGGAG
AGGGGACACGGGGAAATCGGATGCATTAGTCTACAGGCTGATGTTGTCCG
TCTCCGATCTCGTCGATTTTGCCTTTGATTTGTGTGTGGGAGAAGACGAA
GAGTAG
back to top

Coding sequence (CDS) from alignment at chr1:254990..256645+

>NO01G01010.1 ID=NO01G01010.1|Name=NO01G01010.1|organism=Nannochloropsis oceanica|type=CDS|length=1656bp|location=Sequence derived from alignment at chr1:254990..256645+ (Nannochloropsis oceanica)
ATGGCAACTCCAAAAGATCATGAAGATCGTAGCTGCCTCCTCCCCCTGAC
CATCTTGCACCAATCCCGCGCATTGGCCACTTGTCTACACGCCAATGACC
TGTCTCACCTCTCCCTCAGTAACCGTGCCTGCCGGTCCTTCTGGCCGCAA
GTCCAGTCCTTGCACGTCCCGTTCTTCCAGTACTCTCTCCTTTCAAGGCA
CGCCGTCAACAAGGCAAGGACGGACGGTTTCCGTCGCGCCTGCCAAGAAG
GCCAGCTCAAGCACCTAGTAAACCTGTCCCTGAACGGAGCTAACTTGGAG
GATAAGGACTTTGAACGTCTCGCCAGTGACATTTTGCCCTACCTGCCTCA
GCTTGAGACCCTGGACGTAGGAAACAATCCCTCCCTCCTGTCCCTTGGAC
TCAACTACCTCGCCTGCAGCCCCAACGCCTTGCCGTCTAATCTCCGCGAC
CTCAGGCTGGCGCATAATCCCAACATGTGTCGGGGAGCGTACGGTGGTGC
ACACCTAGGGCGGCTCTTAATTCAGCTGTGGCCACGCTTGGAGTGCTTGG
ACTTGACGCAGACCGGAGTGACGGAGGACACCCTCAGGATTGCGGTCGAC
CTTTTAAAATGTTTGACGGAGCTTAGAGAAGGTGGGGGCGGTAGAGAAAG
GAAAGAAAGAGGAAACGAAGACGAAGCAAAAGGGCCGCGGCTTCCCCAGC
TTGGAGTTGCCGGTCTACGCGAGCTCCGGCTAGGCCAAAATATATTGCAG
GGACGAGGGAGCGCCCAGGTATTGTCAGCGGCTTTAGAATGCCCTGGCAG
GCCTGGAACGAAGCAGCCCCTGGAACGTCTGATCTTAGACGACTGCTATA
TGGGCGATGAGGGCTTGGCGTTCTTCGCGGAAGCTTCGCTGTGTTCGGGT
CAATTTTGCTCGCTTCGTGAATTGCACTTGCAGAACAATCGGTGCGGTGA
GGGGGGCGCGCGGGCGCTGGGGAAGGCGTGTGTAGAGGGCTTACCAGCTC
TGGAGTTTTTGGGGCTGCAGATGAATATGATGGGGAACGTGGGAGCCTTA
GCCCTTGTGGAGGGGATGGTGGGCGAGGAGGAGGATGACGGGGGGGAGGG
AGGGGAGGGGAGGGATATGGCGAGGTGGGAGAAAATGAAGGAAGCGGTGG
TAAAAAAGGAAGGGGATAAAAGAAGTCTGCCAAGATTAAAACGACTGGAT
TTGTCGCATAATATGATTGATGCATTGGGGGTCGAGAGATTTTCGAAGTT
ACTGTTGGGATCGGGCCGTTGCCCTTCTCTCGAGGAGCTCGATCTTACGC
ACAATGCTGTGCGGGAGAAAGAGGCTTGGGAGTTGCAGCGTGCCATCCAC
TTCTGCAGCAGCAGAAGCAGCACCACTATCTCCGCCTTGACAAAAGCCGG
TAGCACGACTACGATTACCACCGTCACGACCTTTTTTTTACAGGGAGAAA
ATAAAGAGACTGAAGTCAAAGTGCGGTTGAGCCCAGGGTTGTACTGCCAG
GTGCTGCTCGAGGGGGAGGAGGAGGAGGAGGAGGTGGGAAGGAGGGGGAG
AGGGGACACGGGGAAATCGGATGCATTAGTCTACAGGCTGATGTTGTCCG
TCTCCGATCTCGTCGATTTTGCCTTTGATTTGTGTGTGGGAGAAGACGAA
GAGTAG
back to top
Synonyms
Publications