NO01G00980.1, NO01G00980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00980.1
Unique NameNO01G00980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1925
Alignment locationchr1:247947..249871 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:247947..249871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00980.1 vs.
Match: EWM29025.1 (Mannose-6-phosphate receptor binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 538.9 bits (1387), Expect = 1.800e-149
Identity = 271/481 (56.34%), Postives = 346/481 (71.93%), Query Frame = 0 
Query:    6 APKRRRLLSPSVVLVLLTASTSTHAVNLKSDGKGGSYHPPSSTLSL---GAEGDTYTFDTKVRTLEILKHLRQGDLPLEVLDEYLPGNGTVDFQLAMKAWDGSDFTCAPVPQPGQQEKKLGQAGAEGEEDGNKGVVAAPLSSLGEPPEALDQKLTVLENTCAMLRTPGYWGYEWCHRREVRQFHEISPPEGVEANAVGVRDPIWSLGKFVRTETRYFDGRKEKGVASVVDYFADGQMCDETGIGRQTAVEFYCCSGERLPPDVRTRIGGVNPAPMAVAQLTSMKEMSICNYSMIVCSPLLCDSDTLYSLVSLTGGAANSQALRLLEPLASYCLKRHEGFWSYEFCYKGAIRQYHTVAMRDSTGQVMSKIESEYIIGAFEPVPENFKEEEHVVKIERDGEEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDRSCHYKAVISTPRLCRHPSFRKERPATHVVQCKR 484
            A KRR LL+     V +    +T  +  ++  KG  +   +S LS+   G E   Y+FDTKVRTLEILKHLRQGD+PLEVL E LPGNG+VDFQ+++KAWDGS+FTCAP+PQ  + +K++   G+                   + PEAL++ L   +NTCA+L    YW YEWCHRREVRQFH  +P +  E +A  VRDP WSLGK+ +TE    +G  ++G  +VVDYF  GQ+C ETG GRQT VEFYCC+   LP +V+ RI  V   P AVAQL S++E++ C Y++IVCSPLLCD+  L +  +LTG AA SQAL+LLEP+AS CL+RH+G+WSYEFCY G+IRQ+HTVA+R++TG V+SK+ESEYIIG  +PVPE FKEE+H++    + EE G   + F+ +Y GGT CDLTG+ RATTV+F+CGEGP+DVF SIKEDRSCHYKAVISTP+LCRHPSFRKE+P THVV CKR
Sbjct:    8 ARKRRPLLALITTSVAIACYAAT-PIPWEAREKGNDFAGSTSPLSIVGPGGEDGAYSFDTKVRTLEILKHLRQGDVPLEVLHEILPGNGSVDFQVSIKAWDGSNFTCAPIPQESEHDKEVDNIGSAH-------------IFKDKAPEALNKNL---DNTCAILNKD-YWSYEWCHRREVRQFHLNTPVDTEEPSAEPVRDPDWSLGKYAKTEVLTPEGG-DRGAMAVVDYFVGGQLCHETGQGRQTIVEFYCCADGSLPSEVQARIADVTRVPYAVAQLMSVEEIATCKYAIIVCSPLLCDAQQLATRATLTGPAAASQALQLLEPMASQCLRRHDGYWSYEFCYNGSIRQFHTVAVREATGNVVSKVESEYIIGTSQPVPEGFKEEDHII---LNKEEEGGDPSLFQMDYTGGTVCDLTGEVRATTVQFICGEGPVDVFVSIKEDRSCHYKAVISTPKLCRHPSFRKEKPPTHVVHCKR 466
The following BLAST results are available for this feature:
BLAST of NO01G00980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29025.11.800e-14956.34Mannose-6-phosphate receptor binding domain protei... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00980NO01G00980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00980.1NO01G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00980.1.cds1NO01G00980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00980.1 ID=NO01G00980.1|Name=NO01G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp
CCCTGGGCAACGGCTACTCGTCAGTTGGAACGAGGAAGCTTCTTGTCAGT
TCAAAAGCAGCCCTTGTGCCCTCTACCCATCCACAAACACTGAGGCTCAA
ATTACTTGGCTTCATGACGAAGTGTAATCCCTCACAGGTCATCTGGCCAT
TCGTCTCTCACGCTCCCTTCATCTCTCACTGACAGAAGCAAGGACACGAC
CCGCAGCGAGCATCATCATCATCATGCCTCCCGCCTGTGCACCTAAACGA
AGACGCCTTCTTTCTCCATCCGTCGTCCTGGTTCTTCTTACCGCCAGCAC
CAGCACGCATGCCGTGAATCTCAAGTCGGATGGGAAGGGTGGTTCCTACC
ACCCCCCGTCCTCCACCCTCAGCCTGGGTGCGGAAGGCGACACCTACACT
TTCGACACCAAGGTCCGCACGCTCGAGATCCTCAAGCATTTGCGTCAGGG
CGACTTGCCGTTGGAGGTATTGGACGAGTATCTACCGGGGAATGGCACGG
TGGACTTTCAACTTGCAATGAAGGCTTGGGACGGGAGTGACTTCACCTGC
GCCCCCGTCCCTCAACCCGGACAGCAGGAAAAGAAGCTGGGACAAGCAGG
CGCAGAAGGAGAAGAAGACGGGAACAAAGGAGTAGTCGCCGCACCTCTCT
CTTCGCTGGGGGAGCCACCCGAGGCATTGGATCAGAAATTGACGGTACTT
GAGAATACGTGCGCGATGTTGCGGACGCCAGGCTATTGGGGTTATGAATG
GTGCCATCGTCGGGAAGTGCGCCAATTTCACGAGATTTCGCCTCCGGAAG
GTGTGGAAGCCAACGCTGTGGGTGTCAGAGATCCGATTTGGAGCTTGGGG
AAATTTGTTAGGACTGAAACGAGGTATTTTGATGGGAGGAAGGAGAAAGG
GGTGGCGTCAGTGGTGGACTACTTTGCTGACGGGCAGATGTGTGACGAGA
CAGGGATCGGGAGGCAGACAGCGGTGGAGTTCTATTGTTGTAGTGGCGAG
AGGTTGCCACCTGATGTGAGAACGAGGATTGGGGGGGTCAATCCGGCGCC
GATGGCTGTTGCGCAATTGACTAGCATGAAAGAGATGTCGATTTGTAATT
ACTCTATGATTGTTTGCTCGCCTCTCCTATGTGACAGTGACACGCTGTAC
TCCCTCGTGAGCTTGACGGGGGGTGCGGCTAACTCGCAGGCGTTGAGGTT
GTTAGAGCCACTTGCGTCGTATTGCCTGAAGAGGCATGAAGGGTTCTGGT
CGTATGAATTTTGTTACAAGGGCGCGATTCGACAGTACCATACTGTGGCT
ATGCGGGATTCCACGGGCCAGGTGATGAGCAAGATAGAGAGTGAATATAT
AATTGGTGCGTTCGAGCCTGTGCCGGAAAATTTCAAGGAGGAGGAGCACG
TTGTGAAGATAGAGAGGGATGGGGAGGAGGGGGGGCTGAAGAGGACATTT
TTTGAGAGGGAGTACCCGGGGGGTACGGAGTGTGATCTGACGGGGGACAA
GCGGGCGACGACAGTGGAATTTGTGTGTGGGGAGGGTCCGCTGGACGTGT
TTGAGTCAATAAAGGAGGATCGATCGTGTCATTACAAGGCGGTCATATCT
ACGCCGAGGTTGTGCCGACATCCATCGTTTCGGAAGGAGCGACCGGCGAC
GCATGTGGTGCAGTGTAAGCGACGGCCGGTGCAGAAATTGTTGGGCTTAC
AGGAAAAAGAGGGGGAGGAGGATGAGGGGGATGAGGAGGATTACGTATTG
GACGAGGATAACACATATGCGGACGAGGAAGGCGTGTATCCTAACGCAAT
TTGAGACCAATAAGCACACGAGCAAAAGAAAATGTGTATATGTTGAGTAC
GCATGTAATATTTGTGGATATGTGGGCAACGGGGCCACTGCATCAACATT
TTTAAATTTATTATGCTAACGTTTG
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protein sequence of NO01G00980.1

>NO01G00980.1-protein ID=NO01G00980.1-protein|Name=NO01G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MPPACAPKRRRLLSPSVVLVLLTASTSTHAVNLKSDGKGGSYHPPSSTLS
LGAEGDTYTFDTKVRTLEILKHLRQGDLPLEVLDEYLPGNGTVDFQLAMK
AWDGSDFTCAPVPQPGQQEKKLGQAGAEGEEDGNKGVVAAPLSSLGEPPE
ALDQKLTVLENTCAMLRTPGYWGYEWCHRREVRQFHEISPPEGVEANAVG
VRDPIWSLGKFVRTETRYFDGRKEKGVASVVDYFADGQMCDETGIGRQTA
VEFYCCSGERLPPDVRTRIGGVNPAPMAVAQLTSMKEMSICNYSMIVCSP
LLCDSDTLYSLVSLTGGAANSQALRLLEPLASYCLKRHEGFWSYEFCYKG
AIRQYHTVAMRDSTGQVMSKIESEYIIGAFEPVPENFKEEEHVVKIERDG
EEGGLKRTFFEREYPGGTECDLTGDKRATTVEFVCGEGPLDVFESIKEDR
SCHYKAVISTPRLCRHPSFRKERPATHVVQCKRRPVQKLLGLQEKEGEED
EGDEEDYVLDEDNTYADEEGVYPNAI*
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mRNA from alignment at chr1:247947..249871+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00980.1 ID=NO01G00980.1|Name=NO01G00980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp|location=Sequence derived from alignment at chr1:247947..249871+ (Nannochloropsis oceanica)
CCCTGGGCAACGGCTACTCGTCAGTTGGAACGAGGAAGCTTCTTGTCAGT
TCAAAAGCAGCCCTTGTGCCCTCTACCCATCCACAAACACTGAGGCTCAA
ATTACTTGGCTTCATGACGAAGTGTAATCCCTCACAGGTCATCTGGCCAT
TCGTCTCTCACGCTCCCTTCATCTCTCACTGACAGAAGCAAGGACACGAC
CCGCAGCGAGCATCATCATCATCATGCCTCCCGCCTGTGCACCTAAACGA
AGACGCCTTCTTTCTCCATCCGTCGTCCTGGTTCTTCTTACCGCCAGCAC
CAGCACGCATGCCGTGAATCTCAAGTCGGATGGGAAGGGTGGTTCCTACC
ACCCCCCGTCCTCCACCCTCAGCCTGGGTGCGGAAGGCGACACCTACACT
TTCGACACCAAGGTCCGCACGCTCGAGATCCTCAAGCATTTGCGTCAGGG
CGACTTGCCGTTGGAGGTATTGGACGAGTATCTACCGGGGAATGGCACGG
TGGACTTTCAACTTGCAATGAAGGCTTGGGACGGGAGTGACTTCACCTGC
GCCCCCGTCCCTCAACCCGGACAGCAGGAAAAGAAGCTGGGACAAGCAGG
CGCAGAAGGAGAAGAAGACGGGAACAAAGGAGTAGTCGCCGCACCTCTCT
CTTCGCTGGGGGAGCCACCCGAGGCATTGGATCAGAAATTGACGGTACTT
GAGAATACGTGCGCGATGTTGCGGACGCCAGGCTATTGGGGTTATGAATG
GTGCCATCGTCGGGAAGTGCGCCAATTTCACGAGATTTCGCCTCCGGAAG
GTGTGGAAGCCAACGCTGTGGGTGTCAGAGATCCGATTTGGAGCTTGGGG
AAATTTGTTAGGACTGAAACGAGGTATTTTGATGGGAGGAAGGAGAAAGG
GGTGGCGTCAGTGGTGGACTACTTTGCTGACGGGCAGATGTGTGACGAGA
CAGGGATCGGGAGGCAGACAGCGGTGGAGTTCTATTGTTGTAGTGGCGAG
AGGTTGCCACCTGATGTGAGAACGAGGATTGGGGGGGTCAATCCGGCGCC
GATGGCTGTTGCGCAATTGACTAGCATGAAAGAGATGTCGATTTGTAATT
ACTCTATGATTGTTTGCTCGCCTCTCCTATGTGACAGTGACACGCTGTAC
TCCCTCGTGAGCTTGACGGGGGGTGCGGCTAACTCGCAGGCGTTGAGGTT
GTTAGAGCCACTTGCGTCGTATTGCCTGAAGAGGCATGAAGGGTTCTGGT
CGTATGAATTTTGTTACAAGGGCGCGATTCGACAGTACCATACTGTGGCT
ATGCGGGATTCCACGGGCCAGGTGATGAGCAAGATAGAGAGTGAATATAT
AATTGGTGCGTTCGAGCCTGTGCCGGAAAATTTCAAGGAGGAGGAGCACG
TTGTGAAGATAGAGAGGGATGGGGAGGAGGGGGGGCTGAAGAGGACATTT
TTTGAGAGGGAGTACCCGGGGGGTACGGAGTGTGATCTGACGGGGGACAA
GCGGGCGACGACAGTGGAATTTGTGTGTGGGGAGGGTCCGCTGGACGTGT
TTGAGTCAATAAAGGAGGATCGATCGTGTCATTACAAGGCGGTCATATCT
ACGCCGAGGTTGTGCCGACATCCATCGTTTCGGAAGGAGCGACCGGCGAC
GCATGTGGTGCAGTGTAAGCGACGGCCGGTGCAGAAATTGTTGGGCTTAC
AGGAAAAAGAGGGGGAGGAGGATGAGGGGGATGAGGAGGATTACGTATTG
GACGAGGATAACACATATGCGGACGAGGAAGGCGTGTATCCTAACGCAAT
TTGAGACCAATAAGCACACGAGCAAAAGAAAATGTGTATATGTTGAGTAC
GCATGTAATATTTGTGGATATGTGGGCAACGGGGCCACTGCATCAACATT
TTTAAATTTATTATGCTAACGTTTG
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Coding sequence (CDS) from alignment at chr1:247947..249871+

>NO01G00980.1 ID=NO01G00980.1|Name=NO01G00980.1|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at chr1:247947..249871+ (Nannochloropsis oceanica)
ATGCCTCCCGCCTGTGCACCTAAACGAAGACGCCTTCTTTCTCCATCCGT
CGTCCTGGTTCTTCTTACCGCCAGCACCAGCACGCATGCCGTGAATCTCA
AGTCGGATGGGAAGGGTGGTTCCTACCACCCCCCGTCCTCCACCCTCAGC
CTGGGTGCGGAAGGCGACACCTACACTTTCGACACCAAGGTCCGCACGCT
CGAGATCCTCAAGCATTTGCGTCAGGGCGACTTGCCGTTGGAGGTATTGG
ACGAGTATCTACCGGGGAATGGCACGGTGGACTTTCAACTTGCAATGAAG
GCTTGGGACGGGAGTGACTTCACCTGCGCCCCCGTCCCTCAACCCGGACA
GCAGGAAAAGAAGCTGGGACAAGCAGGCGCAGAAGGAGAAGAAGACGGGA
ACAAAGGAGTAGTCGCCGCACCTCTCTCTTCGCTGGGGGAGCCACCCGAG
GCATTGGATCAGAAATTGACGGTACTTGAGAATACGTGCGCGATGTTGCG
GACGCCAGGCTATTGGGGTTATGAATGGTGCCATCGTCGGGAAGTGCGCC
AATTTCACGAGATTTCGCCTCCGGAAGGTGTGGAAGCCAACGCTGTGGGT
GTCAGAGATCCGATTTGGAGCTTGGGGAAATTTGTTAGGACTGAAACGAG
GTATTTTGATGGGAGGAAGGAGAAAGGGGTGGCGTCAGTGGTGGACTACT
TTGCTGACGGGCAGATGTGTGACGAGACAGGGATCGGGAGGCAGACAGCG
GTGGAGTTCTATTGTTGTAGTGGCGAGAGGTTGCCACCTGATGTGAGAAC
GAGGATTGGGGGGGTCAATCCGGCGCCGATGGCTGTTGCGCAATTGACTA
GCATGAAAGAGATGTCGATTTGTAATTACTCTATGATTGTTTGCTCGCCT
CTCCTATGTGACAGTGACACGCTGTACTCCCTCGTGAGCTTGACGGGGGG
TGCGGCTAACTCGCAGGCGTTGAGGTTGTTAGAGCCACTTGCGTCGTATT
GCCTGAAGAGGCATGAAGGGTTCTGGTCGTATGAATTTTGTTACAAGGGC
GCGATTCGACAGTACCATACTGTGGCTATGCGGGATTCCACGGGCCAGGT
GATGAGCAAGATAGAGAGTGAATATATAATTGGTGCGTTCGAGCCTGTGC
CGGAAAATTTCAAGGAGGAGGAGCACGTTGTGAAGATAGAGAGGGATGGG
GAGGAGGGGGGGCTGAAGAGGACATTTTTTGAGAGGGAGTACCCGGGGGG
TACGGAGTGTGATCTGACGGGGGACAAGCGGGCGACGACAGTGGAATTTG
TGTGTGGGGAGGGTCCGCTGGACGTGTTTGAGTCAATAAAGGAGGATCGA
TCGTGTCATTACAAGGCGGTCATATCTACGCCGAGGTTGTGCCGACATCC
ATCGTTTCGGAAGGAGCGACCGGCGACGCATGTGGTGCAGTGTAAGCGAC
GGCCGGTGCAGAAATTGTTGGGCTTACAGGAAAAAGAGGGGGAGGAGGAT
GAGGGGGATGAGGAGGATTACGTATTGGACGAGGATAACACATATGCGGA
CGAGGAAGGCGTGTATCCTAACGCAATTTGA
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Synonyms
Publications