NO01G00960.1, NO01G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00960.1
Unique NameNO01G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1370
Alignment locationchr1:242706..244416 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:242706..244416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00960.1 vs.
Match: EWM29024.1 (ribosome biogenesis regulatory protein [Nannochloropsis gaditana])

HSP 1 Score: 489.2 bits (1258), Expect = 1.100e-134
Identity = 260/364 (71.43%), Postives = 296/364 (81.32%), Query Frame = 0 
Query:    7 VVKATELIPKAFNGTVAVPEEKSDDLLYDLHHLAAVDSHPVDLENFQANPEKYLLESATFGLQGIIDRLFELPYESSNTGPVVALPAATTYLPRAQRLPEAKKETRWEKFAREKGITNKKRARMLWDEEAQEWRPRWGYNRAKGGVMDQAIVEVMPGDDPLVDPWTEARNSKRARVEKNLMQQAKNRGLV-GVGTLAPGAKAGGRKGKKERLAAKG--------PAYGLPVDLMPTKKHEKAPAGTAAAAASAEGTKAVPKKKGKAAGLKALEVAQHSTASLGKFDAKLVGEPEKKVKKVRKVASVADSKALLHESKKMNSILTSVLRPKGGSGGSGKTAHVNIDALEPERAGYARKKGRGAVK 362
            VVKA ++ P A+NG  +  ++K DDLLYDLHHLAAVDSHPVDLE FQ++PEKYL ESATFG+QGI++RLFELPYE SNTGPVV LP ATTYLPRA+ LPEA++ TRWEKFA+EKGIT KKR+R +WDE+AQEWRPRWGY RAK GV D AIVEV PG+DP VDPWT+A+ +K ARV KNL QQAKN+G+  G   LAPG K G R GK+ER A           P YGLPVDL  TKKH +AP G  AA  S EG KAVPKK+GK AGLKALEVAQ STASLGKFDAKL GEPEKKVKKVRKVA VADSK+L+ ESK+MNS+L++VLRPKG   G+GK +HVNIDALEPERAGY+RKKGRGAVK
Sbjct:    8 VVKAVDVAPGAYNGANSAHKDKPDDLLYDLHHLAAVDSHPVDLEGFQSDPEKYLWESATFGVQGIVNRLFELPYEQSNTGPVVTLPGATTYLPRAKPLPEARQATRWEKFAKEKGITKKKRSRTVWDEDAQEWRPRWGYKRAKNGVEDAAIVEVKPGEDPNVDPWTQAQEAKSARVAKNLQQQAKNKGMGRGTSILAPGTKPGKRVGKREREAMAAATAAGPPAPVYGLPVDLPATKKHVQAPGGPGAA--SEEGGKAVPKKRGKVAGLKALEVAQQSTASLGKFDAKLAGEPEKKVKKVRKVAPVADSKSLVEESKRMNSVLSTVLRPKGTGPGTGK-SHVNIDALEPERAGYSRKKGRGAVK 368
The following BLAST results are available for this feature:
BLAST of NO01G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29024.11.100e-13471.43ribosome biogenesis regulatory protein [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00960NO01G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00960.1NO01G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00960.1.cds1NO01G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00960.1.cds2NO01G00960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00960.1 ID=NO01G00960.1|Name=NO01G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp
AAACACACAGGGCGTCTCGACCCCCACCATCATCATGCCCGCGAAAGTTG
CTGTGGTCAAGGCCACGGAACTGATACCCAAGGCGTTCAATGGCACGGTT
GCAGTCCCCGAGGAGAAGTCTGATGATCTGTTGTACGACCTGCATCACTT
GGCGGCCGTCGATTCCCATCCAGTCGACCTCGAAAATTTTCAAGCCAATC
CGGAAAAGTACCTGTTGGAAAGTGCCACCTTTGGCCTTCAAGGCATCATC
GACCGCCTCTTTGAATTGCCTTATGAGTCTTCCAACACTGGCCCCGTCGT
GGCCTTACCTGCAGCCACCACCTATCTTCCCCGCGCTCAACGCCTTCCAG
AGGCAAAGAAGGAAACTCGATGGGAGAAATTCGCCAGGGAGAAGGGGATC
ACGAACAAAAAGCGGGCACGAATGCTGTGGGATGAAGAGGCGCAGGAGTG
GCGACCTCGATGGGGATATAATCGAGCAAAGGGTGGAGTGATGGATCAAG
CGATTGTAGAAGTCATGCCTGGGGATGATCCGCTTGTGGATCCCTGGACG
GAGGCAAGGAATAGCAAGAGGGCACGGGTGGAAAAGAACTTGATGCAGCA
GGCTAAGAACAGGGGACTGGTAGGCGTGGGGACGTTGGCGCCGGGGGCGA
AGGCAGGAGGGAGAAAGGGGAAGAAGGAAAGGTTGGCAGCGAAGGGACCG
GCGTATGGGTTGCCTGTGGATTTGATGCCCACGAAGAAGCACGAGAAGGC
ACCTGCTGGTACTGCTGCTGCTGCTGCTTCTGCGGAGGGCACAAAGGCAG
TTCCAAAGAAGAAGGGAAAGGCCGCAGGTTTGAAAGCGTTGGAGGTGGCG
CAACACTCGACGGCATCACTGGGAAAGTTTGACGCGAAGCTGGTGGGGGA
GCCAGAGAAGAAGGTGAAGAAGGTCAGAAAGGTTGCGTCAGTTGCGGATA
GCAAGGCCTTGCTTCACGAATCGAAAAAGATGAATTCGATTTTGACTTCG
GTATTGCGGCCGAAAGGTGGGAGTGGGGGCAGTGGGAAGACAGCCCATGT
GAATATTGATGCGTTGGAGCCGGAGAGGGCGGGGTATGCGAGGAAGAAGG
GGCGGGGGGCGGTAAAAGGTGGTGGAAAGAAGAAGAAGTAAGGTGCTGGC
ATGGAATGTGCTGCTGGGAGGGGGCTGATATGGGGAAAGAGGAAAAACGG
ACAATATCTCAAGGGAACGATGAACAAGAGTGATGCGACGAAGGGGAGAG
GGGGAAAGATGAAAAGAGAATTTTGTGTTTTCCGCACACACGTTAGAAAG
CCAAATTAAGTAATAGGAGAAATGATATTGTTTGCAAAGTCAAAGAACCA
ATAGGAAAGTAAGAGGGAGA
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protein sequence of NO01G00960.1

>NO01G00960.1-protein ID=NO01G00960.1-protein|Name=NO01G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MPAKVAVVKATELIPKAFNGTVAVPEEKSDDLLYDLHHLAAVDSHPVDLE
NFQANPEKYLLESATFGLQGIIDRLFELPYESSNTGPVVALPAATTYLPR
AQRLPEAKKETRWEKFAREKGITNKKRARMLWDEEAQEWRPRWGYNRAKG
GVMDQAIVEVMPGDDPLVDPWTEARNSKRARVEKNLMQQAKNRGLVGVGT
LAPGAKAGGRKGKKERLAAKGPAYGLPVDLMPTKKHEKAPAGTAAAAASA
EGTKAVPKKKGKAAGLKALEVAQHSTASLGKFDAKLVGEPEKKVKKVRKV
ASVADSKALLHESKKMNSILTSVLRPKGGSGGSGKTAHVNIDALEPERAG
YARKKGRGAVKGGGKKKK*
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mRNA from alignment at chr1:242706..244416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00960.1 ID=NO01G00960.1|Name=NO01G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1711bp|location=Sequence derived from alignment at chr1:242706..244416+ (Nannochloropsis oceanica)
AAACACACAGGGCGTCTCGACCCCCACCATCATCATGCCCGCGAAAGTTG
CTGTGGTCAAGGCCACGGAACTGATACCCAAGGCGTTCAATGGCACGGTT
GCAGTCCCCGAGGAGAAGTCTGATGATCTGTTGTACGACCTGCATCACTT
GGCGGCCGTCGATTCCCATCCAGTAAGCTCTTGTGTGAGGTGTGCGTGTG
TGCTTGCGGTCCCTGTTACCAAGATACTGCCCAACTTACCCTCCACCCCC
TTGATAGTTTTTTACGCGAGAATTCACGGCATGTTCGCAGGCTTTCAAGA
AAAAGGAGGGGGGCTGTACTCGAACAATTTGTCTTGTCCCTGTGACAGTC
TTAACCCCGCTGAAAACATCCAACCTCACTCCTCTCGCTCCCTCATTCAA
TCTCCGTCGCCATCCCAGAGGATAACTTGCTGGAAAACGTCCCCACCAGG
GAGGCACGTTGTTCCACTTCATAACCTGACATCTCTTTCACTCCCTGCCT
TCTTTCTGCTTAGGTCGACCTCGAAAATTTTCAAGCCAATCCGGAAAAGT
ACCTGTTGGAAAGTGCCACCTTTGGCCTTCAAGGCATCATCGACCGCCTC
TTTGAATTGCCTTATGAGTCTTCCAACACTGGCCCCGTCGTGGCCTTACC
TGCAGCCACCACCTATCTTCCCCGCGCTCAACGCCTTCCAGAGGCAAAGA
AGGAAACTCGATGGGAGAAATTCGCCAGGGAGAAGGGGATCACGAACAAA
AAGCGGGCACGAATGCTGTGGGATGAAGAGGCGCAGGAGTGGCGACCTCG
ATGGGGATATAATCGAGCAAAGGGTGGAGTGATGGATCAAGCGATTGTAG
AAGTCATGCCTGGGGATGATCCGCTTGTGGATCCCTGGACGGAGGCAAGG
AATAGCAAGAGGGCACGGGTGGAAAAGAACTTGATGCAGCAGGCTAAGAA
CAGGGGACTGGTAGGCGTGGGGACGTTGGCGCCGGGGGCGAAGGCAGGAG
GGAGAAAGGGGAAGAAGGAAAGGTTGGCAGCGAAGGGACCGGCGTATGGG
TTGCCTGTGGATTTGATGCCCACGAAGAAGCACGAGAAGGCACCTGCTGG
TACTGCTGCTGCTGCTGCTTCTGCGGAGGGCACAAAGGCAGTTCCAAAGA
AGAAGGGAAAGGCCGCAGGTTTGAAAGCGTTGGAGGTGGCGCAACACTCG
ACGGCATCACTGGGAAAGTTTGACGCGAAGCTGGTGGGGGAGCCAGAGAA
GAAGGTGAAGAAGGTCAGAAAGGTTGCGTCAGTTGCGGATAGCAAGGCCT
TGCTTCACGAATCGAAAAAGATGAATTCGATTTTGACTTCGGTATTGCGG
CCGAAAGGTGGGAGTGGGGGCAGTGGGAAGACAGCCCATGTGAATATTGA
TGCGTTGGAGCCGGAGAGGGCGGGGTATGCGAGGAAGAAGGGGCGGGGGG
CGGTAAAAGGTGGTGGAAAGAAGAAGAAGTAAGGTGCTGGCATGGAATGT
GCTGCTGGGAGGGGGCTGATATGGGGAAAGAGGAAAAACGGACAATATCT
CAAGGGAACGATGAACAAGAGTGATGCGACGAAGGGGAGAGGGGGAAAGA
TGAAAAGAGAATTTTGTGTTTTCCGCACACACGTTAGAAAGCCAAATTAA
GTAATAGGAGAAATGATATTGTTTGCAAAGTCAAAGAACCAATAGGAAAG
TAAGAGGGAGA
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Coding sequence (CDS) from alignment at chr1:242706..244416+

>NO01G00960.1 ID=NO01G00960.1|Name=NO01G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at chr1:242706..244416+ (Nannochloropsis oceanica)
ATGCCCGCGAAAGTTGCTGTGGTCAAGGCCACGGAACTGATACCCAAGGC
GTTCAATGGCACGGTTGCAGTCCCCGAGGAGAAGTCTGATGATCTGTTGT
ACGACCTGCATCACTTGGCGGCCGTCGATTCCCATCCAGTCGACCTCGAA
AATTTTCAAGCCAATCCGGAAAAGTACCTGTTGGAAAGTGCCACCTTTGG
CCTTCAAGGCATCATCGACCGCCTCTTTGAATTGCCTTATGAGTCTTCCA
ACACTGGCCCCGTCGTGGCCTTACCTGCAGCCACCACCTATCTTCCCCGC
GCTCAACGCCTTCCAGAGGCAAAGAAGGAAACTCGATGGGAGAAATTCGC
CAGGGAGAAGGGGATCACGAACAAAAAGCGGGCACGAATGCTGTGGGATG
AAGAGGCGCAGGAGTGGCGACCTCGATGGGGATATAATCGAGCAAAGGGT
GGAGTGATGGATCAAGCGATTGTAGAAGTCATGCCTGGGGATGATCCGCT
TGTGGATCCCTGGACGGAGGCAAGGAATAGCAAGAGGGCACGGGTGGAAA
AGAACTTGATGCAGCAGGCTAAGAACAGGGGACTGGTAGGCGTGGGGACG
TTGGCGCCGGGGGCGAAGGCAGGAGGGAGAAAGGGGAAGAAGGAAAGGTT
GGCAGCGAAGGGACCGGCGTATGGGTTGCCTGTGGATTTGATGCCCACGA
AGAAGCACGAGAAGGCACCTGCTGGTACTGCTGCTGCTGCTGCTTCTGCG
GAGGGCACAAAGGCAGTTCCAAAGAAGAAGGGAAAGGCCGCAGGTTTGAA
AGCGTTGGAGGTGGCGCAACACTCGACGGCATCACTGGGAAAGTTTGACG
CGAAGCTGGTGGGGGAGCCAGAGAAGAAGGTGAAGAAGGTCAGAAAGGTT
GCGTCAGTTGCGGATAGCAAGGCCTTGCTTCACGAATCGAAAAAGATGAA
TTCGATTTTGACTTCGGTATTGCGGCCGAAAGGTGGGAGTGGGGGCAGTG
GGAAGACAGCCCATGTGAATATTGATGCGTTGGAGCCGGAGAGGGCGGGG
TATGCGAGGAAGAAGGGGCGGGGGGCGGTAAAAGGTGGTGGAAAGAAGAA
GAAGTAA
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Synonyms
Publications