NO01G00950.1, NO01G00950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00950.1
Unique NameNO01G00950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2311
Alignment locationchr1:239955..242494 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:239955..242494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00950.1 vs.
Match: XP_011026535.1 (PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Populus euphratica])

HSP 1 Score: 134.4 bits (337), Expect = 1.200e-27
Identity = 58/122 (47.54%), Postives = 86/122 (70.49%), Query Frame = 0 
Query:    7 RKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTACSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYAEPEAGQEQRIRDWIRQKYIEKRWHAHST 129
            ++EER+ K ++ L KLP N+RC +C    PQYV  TF TF+CT+CSGIHREF+HRVKS+S++ F  +EV AL+ GGNE    +YL HWDP+    P+    Q++RD+I+  Y+++R++   +
Sbjct:    6 KEEERIEKIIRGLLKLPENRRCINCNSLGPQYVCTTFFTFVCTSCSGIHREFTHRVKSVSMAKFNAEEVSALQAGGNERARQIYLKHWDPQRNQLPDGSNLQKLRDFIKHVYMDRRYNGEKS 127
The following BLAST results are available for this feature:
BLAST of NO01G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_011026535.11.200e-2747.54PREDICTED: probable ADP-ribosylation factor GTPase... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00950NO01G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00950.1NO01G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00950.1.cds1NO01G00950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00950.1.cds2NO01G00950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00950.1 ID=NO01G00950.1|Name=NO01G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2311bp
AGCGAACGTTGCCTTCCCCTTCGAAATTCGGAGGCCCGCGAGTCTTGCAT
GCCGACCCTGAACATCACCGACCATGCTCCGCATTACACCTATGCACAGC
CAACACGCGTTGATCTGTCATGTTTGGTGCTTGTGGCATGCTTTCTGGTT
CTGGCCACCGTGGTTTTGGTCACACAATTCCGTATGTACGCGCCATCGTC
ATTTCCTTCCCAACGGCACATCTCAATTCCCTTGCCTTTAGACACGTGAT
CCCAGTACAGGAGTATCAGCAATAAGCCTCATTGTGTACACACACACGAC
ATTAACAAGGAAAATTTCCACTCACTCTTCTTCAGCAGGCGGGATGGCGG
GGTTGGACAAGCGAAAGGAGGAGCGCCTCATCAAGGCTGTTAAGGACTTG
AGCAAACTCCCTCCCAATAAGCGCTGCGCAGACTGCACAGAGAAGCTGCC
GCAGTACGTAAACCTCACGTTCAGCACCTTCATTTGCACAGCGTGCTCGG
GCATCCATCGCGAGTTCTCTCACCGTGTTAAGAGTATCTCCCTCTCCACC
TTCACCCTCGATGAGGTCAAGGCCTTAAAAGACGGAGGAAACGAAGCTTG
CGCCGCTCTCTATCTTGCCCATTGGGACCCGAGAGATTATGCAGAGCCGG
AAGCAGGGCAAGAACAACGAATCCGTGACTGGATCAGGCAGAAGTACATT
GAGAAAAGGTGGCATGCTCATAGTACCTACCATCCCGGAGGAGGAAAGGG
CGGGGACGGAAGGGGGAGGACGACCTTAGGTGGCAGCGCCGGGGGTGGAG
TGGGGAGGGTGGGGGGGGGAGGAGGAGGGAGAGAGGGAGGGAGGGAGGAG
ATGTATGACCCACACCCGACGTCGTTGAGTCGGAGGCAGCAATCTGCGTC
CTCTTCCTTGTCGTCGACAAGGGCGACGGGAGGAGAAAAAGGAACAGGAG
GAGCATCGACCAGTCACCCAGATGATCGAGAAGTAGAGGAAGGGAGGGAG
GGGGGGCTGGGTCGGAGTAGAAGGAAGCAGCAGCAGGGGATGGACTTGTT
GGATTTGGTGTTTGCGCCTGGCTCGCCAGAACGCAAGCAGCAGCCGCAGC
AGAAGAAGGAGGAGACAACAGGGGCTTTTGCGTCTGATCCCTTTGCAAGC
TCTTCAGGATGGGCGGGGAGTACAGGGGGGGGACAATCCGCCATCAGCTT
CAACAATACACCACCCCCGCCGCAGCAGCCTCCCCTCCCTCCCCACCTCC
AACAGCATCCCTCCTCCTCTTCATCGCAATTTGGCGCCGACTTCTTTTCT
GCCCCTCAATTTCCCTCTCCTCCCCAGCCGCAACCTTCCACCTTTTACCC
TTCCCCACCTCCTCCGCCTCCGCAGCAGCAGCAGCAGCAGTACCAGCAGC
AGAGGCAGCCGCAGCCGGTTTACGGTGACATGCCTACTCCTCCCCCGGCA
CCTTTAACCCTCCCTCAGCAAGTAGGGGAAGGATTTCAAGGCTACCCCTC
CGTCACTGCCCCCCCGCCGGCCCCGCCTCCTCCTCCCCAACAGCAGCAGC
AACAACAACAACCAGCCTATGCTGGCGGCTGGCCCCGGCAACAGCAGCAC
CAGCAGCAACAACAAGGACAGCAGCAGCCTCCGTTCCCACAGCAGCAGCA
ACAACAGCCTACCCCCCCGCGATCCTTCCCCTCCTCTTACCCCCCTAAAC
TCCCTCCCGGCATGGTCCGCTTCACCCCTCCCTCCCCCCCTCCCTCCCGT
TCCCCCATCCAAACCCTCTCCATCGAAGATGCCTTTGGGAACCTGGACAT
ATCCACCAGCGGCACTACCACCCTACCTTTCCCCCCCACACACACCTCCG
CCCATCCCCAGCCCCCCATCGCCCCCTCCCTTCCTACCTTCCAGACGGGT
GAAGCTGTGATTTACACGGACTCCCAAGGCAAAAAAACCCGGACGGTAAT
CAAAGAAGTCCACATGGATGATTACCCTCCTTACTACACTATCACACTCG
CCAACGGCTCAGAGCGACAGACGGATTTCCACCATGTTTCCAAAATTCAT
GCTCCTCTTCCTCCTGCCCCCGCTCCTCCTCGCGCAACTGCCACTCCCGC
CACGCAGCAGCAGCAGCAGCAGCCGCCGCCTTGGGAGAAACAGCAAGCGG
CGGTGCCGGCGTCGGGATCACACCTGCAACAACAATTGCAGCCGCAGCAG
CACAATCCGTTTTTGGCTTCTGCCGTTCCTCCTGGTGCTGCTCCTTTTCC
TCCCCCTCCTCCACCGGCAAGTGGGAATCCGTTCGATATGTTTTAGAGGA
GGGGAGATAAA
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protein sequence of NO01G00950.1

>NO01G00950.1-protein ID=NO01G00950.1-protein|Name=NO01G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MAGLDKRKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTA
CSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYA
EPEAGQEQRIRDWIRQKYIEKRWHAHSTYHPGGGKGGDGRGRTTLGGSAG
GGVGRVGGGGGGREGGREEMYDPHPTSLSRRQQSASSSLSSTRATGGEKG
TGGASTSHPDDREVEEGREGGLGRSRRKQQQGMDLLDLVFAPGSPERKQQ
PQQKKEETTGAFASDPFASSSGWAGSTGGGQSAISFNNTPPPPQQPPLPP
HLQQHPSSSSSQFGADFFSAPQFPSPPQPQPSTFYPSPPPPPPQQQQQQY
QQQRQPQPVYGDMPTPPPAPLTLPQQVGEGFQGYPSVTAPPPAPPPPPQQ
QQQQQQPAYAGGWPRQQQHQQQQQGQQQPPFPQQQQQQPTPPRSFPSSYP
PKLPPGMVRFTPPSPPPSRSPIQTLSIEDAFGNLDISTSGTTTLPFPPTH
TSAHPQPPIAPSLPTFQTGEAVIYTDSQGKKTRTVIKEVHMDDYPPYYTI
TLANGSERQTDFHHVSKIHAPLPPAPAPPRATATPATQQQQQQPPPWEKQ
QAAVPASGSHLQQQLQPQQHNPFLASAVPPGAAPFPPPPPPASGNPFDMF
*
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mRNA from alignment at chr1:239955..242494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00950.1 ID=NO01G00950.1|Name=NO01G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2540bp|location=Sequence derived from alignment at chr1:239955..242494- (Nannochloropsis oceanica)
AGCGAACGTTGCCTTCCCCTTCGAAATTCGGAGGCCCGCGAGTCTTGCAT
GCCGACCCTGAACATCACCGACCATGCTCCGCATTACACCTATGCACAGC
CAACACGCGTTGATCTGTCATGTTTGGTGCTTGTGGCATGCTTTCTGGTT
CTGGCCACCGTGGTTTTGGTCACACAATTCCGTATGTACGCGCCATCGTC
ATTTCCTTCCCAACGGCACATCTCAATTCCCTTGCCTTTAGACACGTGAT
CCCAGTACAGGAGTATCAGCAATAAGCCTCATTGTGTACACACACACGAC
ATTAACAAGGAAAATTTCCACTCACTCTTCTTCAGCAGGCGGGATGGCGG
GGTTGGACAAGCGAAAGGAGGAGCGCCTCATCAAGGCTGTTAAGGACTTG
AGCAAACTCCCTCCCAATAAGCGCTGCGCAGACTGCACAGAGAAGCTGCC
GCAGTACGTAAACCTCACGTTCAGCACCTTCATTTGCACAGGTACAGGAT
TTCGGGGATGGGCGGTAGTTTGGGATGTGGGTGGGCGCGATGGCTGCGTA
TTCACTTGCGCTCCGCTGGTGCCTTCGTCATGTACGCTTGCTTACTTGGG
ATAAGGCGTGCCTTCTTATTATTTTGTTTGCGTGCGCGCGCGCAGAAATG
GCCTCTAAGGCAGTTGCATCCGCCCTTGCGGTTCATCTCCCCATTCACCC
CTCCCTATCTTCACCTACAGCGTGCTCGGGCATCCATCGCGAGTTCTCTC
ACCGTGTTAAGAGTATCTCCCTCTCCACCTTCACCCTCGATGAGGTCAAG
GCCTTAAAAGACGGAGGAAACGAAGCTTGCGCCGCTCTCTATCTTGCCCA
TTGGGACCCGAGAGATTATGCAGAGCCGGAAGCAGGGCAAGAACAACGAA
TCCGTGACTGGATCAGGCAGAAGTACATTGAGAAAAGGTGGCATGCTCAT
AGTACCTACCATCCCGGAGGAGGAAAGGGCGGGGACGGAAGGGGGAGGAC
GACCTTAGGTGGCAGCGCCGGGGGTGGAGTGGGGAGGGTGGGGGGGGGAG
GAGGAGGGAGAGAGGGAGGGAGGGAGGAGATGTATGACCCACACCCGACG
TCGTTGAGTCGGAGGCAGCAATCTGCGTCCTCTTCCTTGTCGTCGACAAG
GGCGACGGGAGGAGAAAAAGGAACAGGAGGAGCATCGACCAGTCACCCAG
ATGATCGAGAAGTAGAGGAAGGGAGGGAGGGGGGGCTGGGTCGGAGTAGA
AGGAAGCAGCAGCAGGGGATGGACTTGTTGGATTTGGTGTTTGCGCCTGG
CTCGCCAGAACGCAAGCAGCAGCCGCAGCAGAAGAAGGAGGAGACAACAG
GGGCTTTTGCGTCTGATCCCTTTGCAAGCTCTTCAGGATGGGCGGGGAGT
ACAGGGGGGGGACAATCCGCCATCAGCTTCAACAATACACCACCCCCGCC
GCAGCAGCCTCCCCTCCCTCCCCACCTCCAACAGCATCCCTCCTCCTCTT
CATCGCAATTTGGCGCCGACTTCTTTTCTGCCCCTCAATTTCCCTCTCCT
CCCCAGCCGCAACCTTCCACCTTTTACCCTTCCCCACCTCCTCCGCCTCC
GCAGCAGCAGCAGCAGCAGTACCAGCAGCAGAGGCAGCCGCAGCCGGTTT
ACGGTGACATGCCTACTCCTCCCCCGGCACCTTTAACCCTCCCTCAGCAA
GTAGGGGAAGGATTTCAAGGCTACCCCTCCGTCACTGCCCCCCCGCCGGC
CCCGCCTCCTCCTCCCCAACAGCAGCAGCAACAACAACAACCAGCCTATG
CTGGCGGCTGGCCCCGGCAACAGCAGCACCAGCAGCAACAACAAGGACAG
CAGCAGCCTCCGTTCCCACAGCAGCAGCAACAACAGCCTACCCCCCCGCG
ATCCTTCCCCTCCTCTTACCCCCCTAAACTCCCTCCCGGCATGGTCCGCT
TCACCCCTCCCTCCCCCCCTCCCTCCCGTTCCCCCATCCAAACCCTCTCC
ATCGAAGATGCCTTTGGGAACCTGGACATATCCACCAGCGGCACTACCAC
CCTACCTTTCCCCCCCACACACACCTCCGCCCATCCCCAGCCCCCCATCG
CCCCCTCCCTTCCTACCTTCCAGACGGGTGAAGCTGTGATTTACACGGAC
TCCCAAGGCAAAAAAACCCGGACGGTAATCAAAGAAGTCCACATGGATGA
TTACCCTCCTTACTACACTATCACACTCGCCAACGGCTCAGAGCGACAGA
CGGATTTCCACCATGTTTCCAAAATTCATGCTCCTCTTCCTCCTGCCCCC
GCTCCTCCTCGCGCAACTGCCACTCCCGCCACGCAGCAGCAGCAGCAGCA
GCCGCCGCCTTGGGAGAAACAGCAAGCGGCGGTGCCGGCGTCGGGATCAC
ACCTGCAACAACAATTGCAGCCGCAGCAGCACAATCCGTTTTTGGCTTCT
GCCGTTCCTCCTGGTGCTGCTCCTTTTCCTCCCCCTCCTCCACCGGCAAG
TGGGAATCCGTTCGATATGTTTTAGAGGAGGGGAGATAAA
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Coding sequence (CDS) from alignment at chr1:239955..242494-

>NO01G00950.1 ID=NO01G00950.1|Name=NO01G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at chr1:239955..242494- (Nannochloropsis oceanica)
ATGGCGGGGTTGGACAAGCGAAAGGAGGAGCGCCTCATCAAGGCTGTTAA
GGACTTGAGCAAACTCCCTCCCAATAAGCGCTGCGCAGACTGCACAGAGA
AGCTGCCGCAGTACGTAAACCTCACGTTCAGCACCTTCATTTGCACAGCG
TGCTCGGGCATCCATCGCGAGTTCTCTCACCGTGTTAAGAGTATCTCCCT
CTCCACCTTCACCCTCGATGAGGTCAAGGCCTTAAAAGACGGAGGAAACG
AAGCTTGCGCCGCTCTCTATCTTGCCCATTGGGACCCGAGAGATTATGCA
GAGCCGGAAGCAGGGCAAGAACAACGAATCCGTGACTGGATCAGGCAGAA
GTACATTGAGAAAAGGTGGCATGCTCATAGTACCTACCATCCCGGAGGAG
GAAAGGGCGGGGACGGAAGGGGGAGGACGACCTTAGGTGGCAGCGCCGGG
GGTGGAGTGGGGAGGGTGGGGGGGGGAGGAGGAGGGAGAGAGGGAGGGAG
GGAGGAGATGTATGACCCACACCCGACGTCGTTGAGTCGGAGGCAGCAAT
CTGCGTCCTCTTCCTTGTCGTCGACAAGGGCGACGGGAGGAGAAAAAGGA
ACAGGAGGAGCATCGACCAGTCACCCAGATGATCGAGAAGTAGAGGAAGG
GAGGGAGGGGGGGCTGGGTCGGAGTAGAAGGAAGCAGCAGCAGGGGATGG
ACTTGTTGGATTTGGTGTTTGCGCCTGGCTCGCCAGAACGCAAGCAGCAG
CCGCAGCAGAAGAAGGAGGAGACAACAGGGGCTTTTGCGTCTGATCCCTT
TGCAAGCTCTTCAGGATGGGCGGGGAGTACAGGGGGGGGACAATCCGCCA
TCAGCTTCAACAATACACCACCCCCGCCGCAGCAGCCTCCCCTCCCTCCC
CACCTCCAACAGCATCCCTCCTCCTCTTCATCGCAATTTGGCGCCGACTT
CTTTTCTGCCCCTCAATTTCCCTCTCCTCCCCAGCCGCAACCTTCCACCT
TTTACCCTTCCCCACCTCCTCCGCCTCCGCAGCAGCAGCAGCAGCAGTAC
CAGCAGCAGAGGCAGCCGCAGCCGGTTTACGGTGACATGCCTACTCCTCC
CCCGGCACCTTTAACCCTCCCTCAGCAAGTAGGGGAAGGATTTCAAGGCT
ACCCCTCCGTCACTGCCCCCCCGCCGGCCCCGCCTCCTCCTCCCCAACAG
CAGCAGCAACAACAACAACCAGCCTATGCTGGCGGCTGGCCCCGGCAACA
GCAGCACCAGCAGCAACAACAAGGACAGCAGCAGCCTCCGTTCCCACAGC
AGCAGCAACAACAGCCTACCCCCCCGCGATCCTTCCCCTCCTCTTACCCC
CCTAAACTCCCTCCCGGCATGGTCCGCTTCACCCCTCCCTCCCCCCCTCC
CTCCCGTTCCCCCATCCAAACCCTCTCCATCGAAGATGCCTTTGGGAACC
TGGACATATCCACCAGCGGCACTACCACCCTACCTTTCCCCCCCACACAC
ACCTCCGCCCATCCCCAGCCCCCCATCGCCCCCTCCCTTCCTACCTTCCA
GACGGGTGAAGCTGTGATTTACACGGACTCCCAAGGCAAAAAAACCCGGA
CGGTAATCAAAGAAGTCCACATGGATGATTACCCTCCTTACTACACTATC
ACACTCGCCAACGGCTCAGAGCGACAGACGGATTTCCACCATGTTTCCAA
AATTCATGCTCCTCTTCCTCCTGCCCCCGCTCCTCCTCGCGCAACTGCCA
CTCCCGCCACGCAGCAGCAGCAGCAGCAGCCGCCGCCTTGGGAGAAACAG
CAAGCGGCGGTGCCGGCGTCGGGATCACACCTGCAACAACAATTGCAGCC
GCAGCAGCACAATCCGTTTTTGGCTTCTGCCGTTCCTCCTGGTGCTGCTC
CTTTTCCTCCCCCTCCTCCACCGGCAAGTGGGAATCCGTTCGATATGTTT
TAG
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Synonyms
Publications