NO01G00940.1, NO01G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00940.1
Unique NameNO01G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1544
Alignment locationchr1:237330..239611 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:237330..239611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G00940.1 vs.
Match: CBN75500.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 289.3 bits (739), Expect = 7.800e-75
Identity = 137/167 (82.04%), Postives = 151/167 (90.42%), Query Frame = 0
Query:    1 MSDYATELLRRQLHELNKNPPEGVSVGLV-DDSLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEEL 167
            MSDYATELLRRQL ELNKNPPEGVSVGL  DD++F WELL+VGPADTLYEGGFFKA+L FP DFPN PPTMTF +EM+HPNVY DGRVCISILHPPGED+FN+QETA+ERWRPILGVE IIVSV+SMLSDPNDESPANIDAAV +RNDR  FKK+ R +VRKSQ+ L
Sbjct:    1 MSDYATELLRRQLQELNKNPPEGVSVGLANDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFISEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 167          
The following BLAST results are available for this feature:
BLAST of NO01G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN75500.17.800e-7582.04conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00940NO01G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00940.1NO01G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00940.1.cds1NO01G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00940.1.cds2NO01G00940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00940.1.cds3NO01G00940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00940.1.cds4NO01G00940.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00940.1.cds5NO01G00940.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00940.1 ID=NO01G00940.1|Name=NO01G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
ACAGGCACCTTTTCCAAGGTCGACGAGGAGGCAGACGAAAGGGGTCGCCA
TCGCTAACAATAGGGGCATCAGCAGCAGGAGGAGCAGCAGCAGCCGGAGA
AGCAGCAGCAGCAGCATTGCGTCCCGTAGCACCAAGGACGTACACAGCCG
TTGCAGGACCACAGACCGCATTTTTTTTTCACCTTTTAATACCTTTTAAC
AGTCATAACCATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGC
ACGAGCTGAACAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGAT
GACAGCCTTTTTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCT
GTACGAAGGAGGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCC
CCAACATGCCTCCGACCATGACCTTCCAGACGGAGATGTGGCACCCTAAT
GTCTACGAGGACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGA
AGATCGCTTCAACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTC
TGGGGGTGGAAGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCT
AATGACGAGAGCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGA
CCGAGCAGGGTTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGG
AGGAGCTATAGGGAGGGAGGGAGGAAGGGAGGAAGGGAAGGGAGGCAAGG
CGCTGGGTTTGTACTTAGTTTTCAAGGAGGGGGAGAAGGAGGGAGGGGGG
GAAGGACAGTGTGGTGATGGGTCCATCGTATTGGTTACTCAAAAATGTCA
TGGCCACTACGAGGGGGGGCGTGAGCTTCATCAATGACGATAGGGAGGAT
GGCAAGCCGGAGATTTAGGAGGGTATATACATCATGAGATGAGATCAAAT
GTTTGGATGTGTAGGCCTAAGTAATTATACAGCATAACCCGAGACTGATT
GGACGACTCATGGAAGCGAATGTGTAGCCCTCTTTAAGAAGACATGTGAT
GTGATATGGGGGGGGGGGAGGGGGGGTTTAAAAGGCGTAGGGAAGGAGAC
TTGTGAGTACCGTTATGTCGGGGAGTCAGGGAGCTAGTGTCCGAGAACGT
GGCGTGAGGACGGAAGGAGGAACCATTGAGTGTAACAACAACAACGAACT
GCGCATACCCGGAGGAGAGACAAGAGGGAAGATGGCAATAGGAGAAAAAA
GGATAAGGGGGGAGGGCTGGCGACATCTTCCTTTCTCCCACCATCCCTCG
CCCCGCCCCGCCTCCCCCTTTTCCACCAGGGGAATAGACAATAGCAAAAA
GAAGATTGCGATGAAGCAGAAAAAGAAGAAGAGGAACAAGAAGCAACAGC
AGCAATAGCGACGATGAAGAGAAAGTAAGGATAGACGAAGGGCCTTACAA
AGCGGCATATTAGAGGGGGGGGGTGCGAAGAAAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
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protein sequence of NO01G00940.1

>NO01G00940.1-protein ID=NO01G00940.1-protein|Name=NO01G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MSDYATELLRRQLHELNKNPPEGVSVGLVDDSLFEWELLLVGPADTLYEG
GFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRF
NDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAG
FKKRVRAVVRKSQEEL*
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mRNA from alignment at chr1:237330..239611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00940.1 ID=NO01G00940.1|Name=NO01G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2282bp|location=Sequence derived from alignment at chr1:237330..239611+ (Nannochloropsis oceanica)
ACAGGCACCTTTTCCAAGGTCGACGAGGAGGCAGACGAAAGGGGTCGCCA TCGCTAACAATAGGGGCATCAGCAGCAGGAGGAGCAGCAGCAGCCGGAGA AGCAGCAGCAGCAGCATTGCGTCCCGTAGCACCAAGGACGTACACAGCCG TTGCAGGACCACAGACCGCATTTTTTTTTCACCTTTTAATACCTTTTAAC AGTCATAACCATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGC ACGGTACGTGGGTCTTACTTGAGGCGGAAGGAAGGGCTTTCAAGTGGGTG TCAACTTTCCTCCCTAATCTCCTTTCTTTACAGCCCTTTCTCTTGAATAC GCTCAGCTTCCACGTTTCCTGCTTGTTGAGGAAATCGCGGCAGTAATACG TCCTCGGAAATACTACTTCTCTTTTACTCAGCACCTTTTAACCTCCCTCC CTCCCCACGTCCCTCTCCCGGCACAGAGCTGAACAAGAACCCTCCTGAAG GCGTTTCAGTGGGCCTGGTCGATGACAGCCTTTTTGAATGGGAGCTGCTT CTCGTCGGACCGGCAGACACGCTGTACGAAGGTACTGGTGTCTTTACATG TATAAATATCTTTCGTTTTGGGTCTGCTATTCCCCTCTGGTCCTCACTCT CTCTCTTTCCCTCTCTCCCCTCCCTTCGTGCCTTCCATGCAGGAGGCTTT TTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACATGCCTCCGAC CATGACCTTCCAGACGGAGATGTGGCACCCTAATGGTGAGGAGGGCGGGA GGGAAAGAGGGAGGGCGGGAGAGATATTCATGGAAGGATGGAAGGAAAGA GGAAGAAGGTAAAGTGTGCAAGCAATGTGTTTCTCGTGCCGTATGTTCAT GAAGGACACATGCGGACTTTTTCCTGAAGCAAAAGCATGCATAGCGCAAT AACTAACTTCCCACCTCCTGCCCTTCTTTCCTCCCTTCCCTCCCTCCTTC CCTACCTCCGTCCCTCCCTCCTATGCCTTCTTCCTTTCAGTCTACGAGGA CGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGCTTCA ACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGTGGAA GCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACGAGAG CCCCGCGAATATCGACGCAGCGGTACGTCCATGCCCTCCCTCCTTTCCTC CCTCCCTCCCTCCCTCCCTCCTTCCTTCCCGACCTTGCATGGCCAACGAT ATAAAGAGCGACCGGGAGCCCACCTTCCCTTCCTCTCTCCTTCCCTCCCT CCCTCTTTCTTTACCTTGCAGGTTCAGTTTAGAAACGACCGAGCAGGGTT CAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCTATAGG GAGGGAGGGAGGAAGGGAGGAAGGGAAGGGAGGCAAGGCGCTGGGTTTGT ACTTAGTTTTCAAGGAGGGGGAGAAGGAGGGAGGGGGGGAAGGACAGTGT GGTGATGGGTCCATCGTATTGGTTACTCAAAAATGTCATGGCCACTACGA GGGGGGGCGTGAGCTTCATCAATGACGATAGGGAGGATGGCAAGCCGGAG ATTTAGGAGGGTATATACATCATGAGATGAGATCAAATGTTTGGATGTGT AGGCCTAAGTAATTATACAGCATAACCCGAGACTGATTGGACGACTCATG GAAGCGAATGTGTAGCCCTCTTTAAGAAGACATGTGATGTGATATGGGGG GGGGGGAGGGGGGGTTTAAAAGGCGTAGGGAAGGAGACTTGTGAGTACCG TTATGTCGGGGAGTCAGGGAGCTAGTGTCCGAGAACGTGGCGTGAGGACG GAAGGAGGAACCATTGAGTGTAACAACAACAACGAACTGCGCATACCCGG AGGAGAGACAAGAGGGAAGATGGCAATAGGAGAAAAAAGGATAAGGGGGG AGGGCTGGCGACATCTTCCTTTCTCCCACCATCCCTCGCCCCGCCCCGCC TCCCCCTTTTCCACCAGGGGAATAGACAATAGCAAAAAGAAGATTGCGAT GAAGCAGAAAAAGAAGAAGAGGAACAAGAAGCAACAGCAGCAATAGCGAC GATGAAGAGAAAGTAAGGATAGACGAAGGGCCTTACAAAGCGGCATATTA GAGGGGGGGGGTGCGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
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Coding sequence (CDS) from alignment at chr1:237330..239611+

>NO01G00940.1 ID=NO01G00940.1|Name=NO01G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at chr1:237330..239611+ (Nannochloropsis oceanica)
ATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGCACGAGCTGAA
CAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGATGACAGCCTTT
TTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCTGTACGAAGGA
GGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACATGCC
TCCGACCATGACCTTCCAGACGGAGATGTGGCACCCTAATGTCTACGAGG
ACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGCTTC
AACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGTGGA
AGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACGAGA
GCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGACCGAGCAGGG
TTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCTATA
G
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Synonyms
Publications