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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:237330..239611 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00940.1 vs.
Match: CBN75500.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 289.3 bits (739), Expect = 7.800e-75 Identity = 137/167 (82.04%), Postives = 151/167 (90.42%), Query Frame = 0
Query: 1 MSDYATELLRRQLHELNKNPPEGVSVGLV-DDSLFEWELLLVGPADTLYEGGFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRFNDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAGFKKRVRAVVRKSQEEL 167
MSDYATELLRRQL ELNKNPPEGVSVGL DD++F WELL+VGPADTLYEGGFFKA+L FP DFPN PPTMTF +EM+HPNVY DGRVCISILHPPGED+FN+QETA+ERWRPILGVE IIVSV+SMLSDPNDESPANIDAAV +RNDR FKK+ R +VRKSQ+ L
Sbjct: 1 MSDYATELLRRQLQELNKNPPEGVSVGLANDDNMFMWELLIVGPADTLYEGGFFKAKLEFPKDFPNNPPTMTFISEMFHPNVYPDGRVCISILHPPGEDKFNEQETAEERWRPILGVEGIIVSVVSMLSDPNDESPANIDAAVMWRNDREAFKKKSRLLVRKSQDAL 167
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00940.1 ID=NO01G00940.1|Name=NO01G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp ACAGGCACCTTTTCCAAGGTCGACGAGGAGGCAGACGAAAGGGGTCGCCA TCGCTAACAATAGGGGCATCAGCAGCAGGAGGAGCAGCAGCAGCCGGAGA AGCAGCAGCAGCAGCATTGCGTCCCGTAGCACCAAGGACGTACACAGCCG TTGCAGGACCACAGACCGCATTTTTTTTTCACCTTTTAATACCTTTTAAC AGTCATAACCATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGC ACGAGCTGAACAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGAT GACAGCCTTTTTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCT GTACGAAGGAGGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCC CCAACATGCCTCCGACCATGACCTTCCAGACGGAGATGTGGCACCCTAAT GTCTACGAGGACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGA AGATCGCTTCAACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTC TGGGGGTGGAAGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCT AATGACGAGAGCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGA CCGAGCAGGGTTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGG AGGAGCTATAGGGAGGGAGGGAGGAAGGGAGGAAGGGAAGGGAGGCAAGG CGCTGGGTTTGTACTTAGTTTTCAAGGAGGGGGAGAAGGAGGGAGGGGGG GAAGGACAGTGTGGTGATGGGTCCATCGTATTGGTTACTCAAAAATGTCA TGGCCACTACGAGGGGGGGCGTGAGCTTCATCAATGACGATAGGGAGGAT GGCAAGCCGGAGATTTAGGAGGGTATATACATCATGAGATGAGATCAAAT GTTTGGATGTGTAGGCCTAAGTAATTATACAGCATAACCCGAGACTGATT GGACGACTCATGGAAGCGAATGTGTAGCCCTCTTTAAGAAGACATGTGAT GTGATATGGGGGGGGGGGAGGGGGGGTTTAAAAGGCGTAGGGAAGGAGAC TTGTGAGTACCGTTATGTCGGGGAGTCAGGGAGCTAGTGTCCGAGAACGT GGCGTGAGGACGGAAGGAGGAACCATTGAGTGTAACAACAACAACGAACT GCGCATACCCGGAGGAGAGACAAGAGGGAAGATGGCAATAGGAGAAAAAA GGATAAGGGGGGAGGGCTGGCGACATCTTCCTTTCTCCCACCATCCCTCG CCCCGCCCCGCCTCCCCCTTTTCCACCAGGGGAATAGACAATAGCAAAAA GAAGATTGCGATGAAGCAGAAAAAGAAGAAGAGGAACAAGAAGCAACAGC AGCAATAGCGACGATGAAGAGAAAGTAAGGATAGACGAAGGGCCTTACAA AGCGGCATATTAGAGGGGGGGGGTGCGAAGAAAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG back to topprotein sequence of NO01G00940.1 >NO01G00940.1-protein ID=NO01G00940.1-protein|Name=NO01G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp MSDYATELLRRQLHELNKNPPEGVSVGLVDDSLFEWELLLVGPADTLYEG GFFKARLAFPTDFPNMPPTMTFQTEMWHPNVYEDGRVCISILHPPGEDRF NDQETADERWRPILGVEAIIVSVISMLSDPNDESPANIDAAVQFRNDRAG FKKRVRAVVRKSQEEL* back to topmRNA from alignment at chr1:237330..239611+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00940.1 ID=NO01G00940.1|Name=NO01G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2282bp|location=Sequence derived from alignment at chr1:237330..239611+ (Nannochloropsis oceanica) ACAGGCACCTTTTCCAAGGTCGACGAGGAGGCAGACGAAAGGGGTCGCCA
TCGCTAACAATAGGGGCATCAGCAGCAGGAGGAGCAGCAGCAGCCGGAGA
AGCAGCAGCAGCAGCATTGCGTCCCGTAGCACCAAGGACGTACACAGCCG
TTGCAGGACCACAGACCGCATTTTTTTTTCACCTTTTAATACCTTTTAAC
AGTCATAACCATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGC
ACGGTACGTGGGTCTTACTTGAGGCGGAAGGAAGGGCTTTCAAGTGGGTG
TCAACTTTCCTCCCTAATCTCCTTTCTTTACAGCCCTTTCTCTTGAATAC
GCTCAGCTTCCACGTTTCCTGCTTGTTGAGGAAATCGCGGCAGTAATACG
TCCTCGGAAATACTACTTCTCTTTTACTCAGCACCTTTTAACCTCCCTCC
CTCCCCACGTCCCTCTCCCGGCACAGAGCTGAACAAGAACCCTCCTGAAG
GCGTTTCAGTGGGCCTGGTCGATGACAGCCTTTTTGAATGGGAGCTGCTT
CTCGTCGGACCGGCAGACACGCTGTACGAAGGTACTGGTGTCTTTACATG
TATAAATATCTTTCGTTTTGGGTCTGCTATTCCCCTCTGGTCCTCACTCT
CTCTCTTTCCCTCTCTCCCCTCCCTTCGTGCCTTCCATGCAGGAGGCTTT
TTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACATGCCTCCGAC
CATGACCTTCCAGACGGAGATGTGGCACCCTAATGGTGAGGAGGGCGGGA
GGGAAAGAGGGAGGGCGGGAGAGATATTCATGGAAGGATGGAAGGAAAGA
GGAAGAAGGTAAAGTGTGCAAGCAATGTGTTTCTCGTGCCGTATGTTCAT
GAAGGACACATGCGGACTTTTTCCTGAAGCAAAAGCATGCATAGCGCAAT
AACTAACTTCCCACCTCCTGCCCTTCTTTCCTCCCTTCCCTCCCTCCTTC
CCTACCTCCGTCCCTCCCTCCTATGCCTTCTTCCTTTCAGTCTACGAGGA
CGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGCTTCA
ACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGTGGAA
GCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACGAGAG
CCCCGCGAATATCGACGCAGCGGTACGTCCATGCCCTCCCTCCTTTCCTC
CCTCCCTCCCTCCCTCCCTCCTTCCTTCCCGACCTTGCATGGCCAACGAT
ATAAAGAGCGACCGGGAGCCCACCTTCCCTTCCTCTCTCCTTCCCTCCCT
CCCTCTTTCTTTACCTTGCAGGTTCAGTTTAGAAACGACCGAGCAGGGTT
CAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCTATAGG
GAGGGAGGGAGGAAGGGAGGAAGGGAAGGGAGGCAAGGCGCTGGGTTTGT
ACTTAGTTTTCAAGGAGGGGGAGAAGGAGGGAGGGGGGGAAGGACAGTGT
GGTGATGGGTCCATCGTATTGGTTACTCAAAAATGTCATGGCCACTACGA
GGGGGGGCGTGAGCTTCATCAATGACGATAGGGAGGATGGCAAGCCGGAG
ATTTAGGAGGGTATATACATCATGAGATGAGATCAAATGTTTGGATGTGT
AGGCCTAAGTAATTATACAGCATAACCCGAGACTGATTGGACGACTCATG
GAAGCGAATGTGTAGCCCTCTTTAAGAAGACATGTGATGTGATATGGGGG
GGGGGGAGGGGGGGTTTAAAAGGCGTAGGGAAGGAGACTTGTGAGTACCG
TTATGTCGGGGAGTCAGGGAGCTAGTGTCCGAGAACGTGGCGTGAGGACG
GAAGGAGGAACCATTGAGTGTAACAACAACAACGAACTGCGCATACCCGG
AGGAGAGACAAGAGGGAAGATGGCAATAGGAGAAAAAAGGATAAGGGGGG
AGGGCTGGCGACATCTTCCTTTCTCCCACCATCCCTCGCCCCGCCCCGCC
TCCCCCTTTTCCACCAGGGGAATAGACAATAGCAAAAAGAAGATTGCGAT
GAAGCAGAAAAAGAAGAAGAGGAACAAGAAGCAACAGCAGCAATAGCGAC
GATGAAGAGAAAGTAAGGATAGACGAAGGGCCTTACAAAGCGGCATATTA
GAGGGGGGGGGTGCGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG back to topCoding sequence (CDS) from alignment at chr1:237330..239611+ >NO01G00940.1 ID=NO01G00940.1|Name=NO01G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=501bp|location=Sequence derived from alignment at chr1:237330..239611+ (Nannochloropsis oceanica) ATGTCAGACTACGCGACGGAGCTCCTCAGACGGCAGCTGCACGAGCTGAA CAAGAACCCTCCTGAAGGCGTTTCAGTGGGCCTGGTCGATGACAGCCTTT TTGAATGGGAGCTGCTTCTCGTCGGACCGGCAGACACGCTGTACGAAGGA GGCTTTTTCAAGGCCCGCTTGGCCTTTCCGACAGACTTCCCCAACATGCC TCCGACCATGACCTTCCAGACGGAGATGTGGCACCCTAATGTCTACGAGG ACGGCCGCGTCTGCATCTCCATCCTTCATCCTCCCGGGGAAGATCGCTTC AACGACCAAGAAACAGCAGATGAGCGATGGCGGCCCATTCTGGGGGTGGA AGCCATCATCGTGTCTGTGATTAGCATGCTCTCTGACCCTAATGACGAGA GCCCCGCGAATATCGACGCAGCGGTTCAGTTTAGAAACGACCGAGCAGGG TTCAAAAAACGTGTGCGCGCCGTCGTCCGCAAGTCGCAGGAGGAGCTATA G back to top
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