NO01G00930.1, NO01G00930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00930.1
Unique NameNO01G00930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1459
Alignment locationchr1:232886..235582 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:232886..235582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00930.1 vs.
Match: EWM29020.1 (Tyrosine-protein phosphatase family, C-terminal domain protein [Nannochloropsis gaditana])

HSP 1 Score: 515.8 bits (1327), Expect = 1.300e-142
Identity = 306/432 (70.83%), Postives = 341/432 (78.94%), Query Frame = 0 
Query:    1 MRVSNCMSMILFPLLLAVAVDAFVPLPPACALASFSSSFPAISSSPSTSILLSSEGRIRRSLASSTGRCSFCRPATAAASLDGMSDTPPSTPASSSPSSTPSSDAP---------AAAAAAAAVAAALASGEIKLQKVKNIRDLSSVKGSGIQPGRIYRTGYLSKASPEDIKFIREKVNFKTLIDLRSEKELGMDDQMNSSVYEGYDTWSWAKGAEKVRIDSPHSSPEDQKKALQRHLISVIDEGVYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGAAIKRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDPAAIAEDYVLSDSAYADLSDEKAMVGALEQ-NNLDPAKFLRAPRSVIEHTLAYIQKKFGSIEGYLDQIGFTEAQRSRLKAALRD 423
            M+ S  ++++LFP L+A  VD F+PLPP CA AS S+S     SSPS++ L + E R R   + S  R      A++AASL GMSD+  S+ +SS+ SS+PSS  P         AAAAAAAA A  + +G IKL++VKNIRDLSSV+GSGI+ GRIYRTGYLSKAS EDIKFIRE   FKTLIDLRSEKELGMDDQMNSS  +        K AE VR+D   +    Q   LQRH ISVIDEG+YQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSG A++RVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVD  AIAEDYVLSD+AYADLSD KAMVGALEQ NNLDP KFLRAPRSVIEHTLAYI+KKFGSIEGYLDQIGFTE +R  LK ALR+
Sbjct:    1 MKASVRVAVLLFPFLIAAVVDGFIPLPPTCAWASSSAS-----SSPSSN-LPAFEDRARIPCSPSGARHRALNIASSAASLGGMSDSSSSSSSSSTSSSSPSSSPPSPSSTPPSDAAAAAAAAAAVGMVTGGIKLERVKNIRDLSSVRGSGIKAGRIYRTGYLSKASEEDIKFIRETAKFKTLIDLRSEKELGMDDQMNSSATK---RGCGGKNAETVRVDPSPAPSTGQTSVLQRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDSGAIAEDYVLSDTAYADLSDAKAMVGALEQVNNLDPEKFLRAPRSVIEHTLAYIEKKFGSIEGYLDQIGFTEDKRVALKKALRE 423
The following BLAST results are available for this feature:
BLAST of NO01G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29020.11.300e-14270.83Tyrosine-protein phosphatase family, C-terminal do... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00930NO01G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00930.1NO01G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00930.1.cds1NO01G00930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00930.1.cds2NO01G00930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00930.1.cds3NO01G00930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00930.1.cds4NO01G00930.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00930.1.cds5NO01G00930.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00930.1.cds6NO01G00930.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00930.1.cds7NO01G00930.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00930.1.cds8NO01G00930.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00930.1 ID=NO01G00930.1|Name=NO01G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1459bp
ACAGAGACGTTTCTTAGTTCTCAGGCTTTCACGCGCCCAAGCACACAGAA
CTCCTTTCCTCCCTCCCTTAAAAAGCTTCCACGAGGCGACCTCCCCACCC
CCTTCCTCCCGTTCCTTGTTTCAGAGTTCGAAAACCGGAGCACCCACACT
CAGCGGTAAAACGATCTGTTATCCATGAGGGTCAGCAATTGCATGTCGAT
GATCCTCTTCCCCCTTCTACTAGCCGTCGCTGTCGATGCCTTTGTGCCCC
TTCCCCCTGCCTGTGCCTTGGCCTCCTTCTCCTCCTCTTTTCCTGCAATC
TCCTCTTCCCCTTCTACCAGCATTTTGCTCTCTAGCGAAGGAAGGATAAG
AAGATCACTGGCATCATCCACTGGCCGCTGCTCTTTTTGTCGCCCTGCCA
CCGCTGCCGCCTCCCTGGATGGAATGAGCGACACCCCCCCCTCTACCCCC
GCCTCCTCCTCCCCCTCCTCCACTCCCTCCTCCGACGCCCCCGCCGCTGC
GGCAGCAGCTGCCGCAGTCGCAGCCGCACTTGCCTCTGGGGAGATTAAGC
TGCAAAAAGTGAAAAACATTCGTGATTTGTCCTCTGTGAAGGGCTCGGGG
ATTCAACCCGGGCGGATCTATAGGACGGGATATTTGAGCAAGGCTTCGCC
GGAGGATATAAAATTCATCAGGGAGAAGGTCAACTTCAAGACCCTCATTG
ATCTGCGCTCAGAGAAAGAGCTTGGGATGGATGACCAAATGAACAGCAGC
GTCTACGAGGGTTACGACACCTGGTCTTGGGCAAAAGGGGCCGAGAAAGT
CCGCATCGACTCCCCCCACTCCTCCCCCGAAGACCAAAAAAAGGCTTTAC
AACGTCATCTCATCAGTGTCATTGATGAGGGCGTTTACCAGCGCGGGGTT
TTCAAGAGGCTGGCCAAGCGGAAGAAGGCTGCCGCCCTCTTCCTCATCAC
GGGCGGGGCCGTGAGCAAGCGGGCCCGTCGTCGCGCCCGCTCCATTTTCC
TTAATTACATCAACGACGCCGGTCTCCCCCTCCTCAACGATCTGCTGCTG
AATTACTCGGGCGCGGCGATCAAGCGTGTTCTGGAGCTCCTGTCGGACAA
GGAAAGATACCCTATTGCCCTCTACTGCACCGCGGGGAAGGACAGGACCG
GTCTGGTCATCCTTCTCTTGCTGGCCTCGCTGGGAGTCGATCCCGCGGCC
ATAGCCGAGGACTACGTTCTATCGGACTCGGCCTACGCGGACTTGAGCGA
CGAAAAAGCCATGGTTGGGGCGTTGGAACAGAACAACTTGGACCCCGCCA
AGTTCTTGCGGGCGCCCCGATCCGTCATCGAGCACACCCTGGCTTACATC
CAAAAGAAATTCGGGTCTATCGAAGGATATTTGGATCAAATCGGCTTCAC
AGAGGCCCAGAGGTCGCGGCTCAAGGCGGCTTTAAGGGACGAGTAGAAGG
AGGGAGGGA
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protein sequence of NO01G00930.1

>NO01G00930.1-protein ID=NO01G00930.1-protein|Name=NO01G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MRVSNCMSMILFPLLLAVAVDAFVPLPPACALASFSSSFPAISSSPSTSI
LLSSEGRIRRSLASSTGRCSFCRPATAAASLDGMSDTPPSTPASSSPSST
PSSDAPAAAAAAAAVAAALASGEIKLQKVKNIRDLSSVKGSGIQPGRIYR
TGYLSKASPEDIKFIREKVNFKTLIDLRSEKELGMDDQMNSSVYEGYDTW
SWAKGAEKVRIDSPHSSPEDQKKALQRHLISVIDEGVYQRGVFKRLAKRK
KAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGAAIK
RVLELLSDKERYPIALYCTAGKDRTGLVILLLLASLGVDPAAIAEDYVLS
DSAYADLSDEKAMVGALEQNNLDPAKFLRAPRSVIEHTLAYIQKKFGSIE
GYLDQIGFTEAQRSRLKAALRDE*
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mRNA from alignment at chr1:232886..235582+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00930.1 ID=NO01G00930.1|Name=NO01G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2697bp|location=Sequence derived from alignment at chr1:232886..235582+ (Nannochloropsis oceanica)
ACAGAGACGTTTCTTAGTTCTCAGGCTTTCACGCGCCCAAGCACACAGAA
CTCCTTTCCTCCCTCCCTTAAAAAGCTTCCACGAGGCGACCTCCCCACCC
CCTTCCTCCCGTTCCTTGTTTCAGAGTTCGAAAACCGGAGCACCCACACT
CAGCGGTAAAACGATCTGTTATCCATGAGGGTCAGCAATTGCATGTCGAT
GATCCTCTTCCCCCTTCTACTAGCCGTCGCTGTCGATGCCTTTGTGCCCC
TTCCCCCTGCCTGTGCCTTGGCCTCCTTCTCCTCCTCTTTTCCTGCAATC
TCCTCTTCCCCTTCTACCAGCATTTTGCTCTCTAGCGAAGGAAGGATAAG
AAGATCACTGGCATCATCCACTGGCCGCTGCTCTTTTTGTCGCCCTGCCA
CCGCTGCCGCCTCCCTGGATGGAATGAGGTACGTCTTGGTCGCGAGTCTG
GTCATGCCCACTCCTTTCCTCCACCCCTCCCTCCACCCCTCCTTTTTTGC
GTTCACAGTGCCACCCGATCTCACGTCCGTCACTCTCTCCTCTCTCACAC
CCCTACCTTTGAAATCACATCAGCGACACCCCCCCCTCTACCCCCGCCTC
CTCCTCCCCCTCCTCCACTCCCTCCTCCGACGCCCCCGCCGCTGCGGCAG
CAGCTGCCGCAGTCGCAGCCGCACTTGCCTCTGGGGAGATTAAGCTGCAA
AAAGTGAAAAACATTCGTGATTTGTCCTCTGTGAAGGGCTCGGGGATTCA
ACCCGGGCGGATCTATAGGACGGGATATTTGAGCAAGGCTTCGCCGGAGG
ATGTAAGAAGGGAGGGAGGGAGGGAAGGAAGGAGGTCATGTAGGAAGTGA
GGGAGGATATGGAGAGATGTTAAGGACTGTTCGTGTCCTGCCACCATTTG
TACATCTTGTTGTCATCGATTACTCATATTTCACGTTTTTCTCTTCCCTC
CTTCCCTCCCTCCCTCCCTCTCAGATAAAATTCATCAGGGAGAAGGTCAA
CTTCAAGACCCTCATTGATCTGCGCTCAGAGAAAGAGGTTAGGCAAAGAT
AATGCGGGGAGGGAGATGGAGAGGGAGGGGAGGAGGGAGGGGTAAAAGCA
GTGCACCCACGTAAAAGTTGTTTCATTAATAGAGATAATGGGATATGAAT
ACGCGTGTACCTCTTCGTTTCACCGATTTTAATTACATGTACACACACCG
TAATAACAGCTTGGGATGGATGACCAAATGAACAGCAGCGTCTACGAGGG
TACGTGCACTCTATTTCTTCCTCCCTCCTTCCCTCCTTCCCTCTCTCCCT
CGTTCACCCATCACCCCCCTCCCTCCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCAGGTTACGACACCTGGTCTTGGGC
AAAAGGGGCCGAGAAAGTCCGCATCGACTCCCCCCACTCCTCCCCCGAAG
ACCAAAAAAAGGCTTTACAACGTCATCTCATCAGTGTCATTGATGAGGGC
GTTTACCAGCGCGGGGTTTTCAAGAGGCTGGCCAAGCGGAAGAAGGTACG
TGCGTACCTGCCCCTCCCTCCCTCCTCCCTTTCACCCTCCTCTCCCTCCC
TTCCACCCCCCCTCCCTCTCCCTCGGTACGTCAACTTCCCTTCCTCCGTC
CGTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCAGGCTGCCGCCCTCTTCC
TCATCACGGGCGGGGCCGTGAGCAAGCGGGCCCGTCGTCGCGCCCGCTCC
ATTTTCCTTAATTACATCAACGACGCCGGTCTCCCCCTCCTCAACGATCT
GCTGCTGAATTACTCGGGCGCGGCGATCAAGCGTGTTCTGGAGCTCCTGT
CGGACAAGGAAAGATACCCTATTGCCCTCTACTGCACCGCGGGGAAGGAC
AGGTAGACACCAAAACACAAACCCTCTCTTCCCTCCCTCCTCCTCTTCGT
TCCTCCCTCCCTCCCTTCCTCCGTCCCTCCTGCCTTTTCTTCGCTGTCTC
TCTCTCTCGCCCCATGGAGATGGTCACTCAGCCCTTCCTCCCTCCCTTCC
TCCCTCCCTTCCTCCCTCCCTCAGGACCGGTCTGGTCATCCTTCTCTTGC
TGGCCTCGCTGGGAGTCGATCCCGCGGCCATAGCCGAGGACTACGTTCTA
TCGGACTCGGCCTACGCGGACTTGAGCGACGAAAAAGCCATGGTTGGGGC
GTTGGAACAGGTGCCTCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTTC
CCTTCATCTCTGTCTTCCCTCCCTTCAATTTTTTTTCAAGTTCCTACCTA
TCTCTAATTCCATCCCTCTTATTTTCCAATCTCTCTATGTTGTATCATCT
TTCGAATCTCTCCATCTAAATCCCAATTCAATCTCTCAATCCCCATTGGA
CCCCGCCAAGTTCTTGCGGGTGCCTTATCCCAATACCATCTCTCTAACCA
CTTTACCTGACCCTTACACATCTTTCGAATCTCTCCATCTAAATCCCAAC
GCCCTCTCTCAATGCCCAGAACAACTTGGACCCCGCCAAGTTCTTGCGGG
CGCCCCGATCCGTCATCGAGCACACCCTGGCTTACATCCAAAAGAAATTC
GGGTCTATCGAAGGATATTTGGATCAAATCGGCTTCACAGAGGCCCAGAG
GTCGCGGCTCAAGGCGGCTTTAAGGGACGAGTAGAAGGAGGGAGGGA
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Coding sequence (CDS) from alignment at chr1:232886..235582+

>NO01G00930.1 ID=NO01G00930.1|Name=NO01G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at chr1:232886..235582+ (Nannochloropsis oceanica)
ATGAGGGTCAGCAATTGCATGTCGATGATCCTCTTCCCCCTTCTACTAGC
CGTCGCTGTCGATGCCTTTGTGCCCCTTCCCCCTGCCTGTGCCTTGGCCT
CCTTCTCCTCCTCTTTTCCTGCAATCTCCTCTTCCCCTTCTACCAGCATT
TTGCTCTCTAGCGAAGGAAGGATAAGAAGATCACTGGCATCATCCACTGG
CCGCTGCTCTTTTTGTCGCCCTGCCACCGCTGCCGCCTCCCTGGATGGAA
TGAGCGACACCCCCCCCTCTACCCCCGCCTCCTCCTCCCCCTCCTCCACT
CCCTCCTCCGACGCCCCCGCCGCTGCGGCAGCAGCTGCCGCAGTCGCAGC
CGCACTTGCCTCTGGGGAGATTAAGCTGCAAAAAGTGAAAAACATTCGTG
ATTTGTCCTCTGTGAAGGGCTCGGGGATTCAACCCGGGCGGATCTATAGG
ACGGGATATTTGAGCAAGGCTTCGCCGGAGGATATAAAATTCATCAGGGA
GAAGGTCAACTTCAAGACCCTCATTGATCTGCGCTCAGAGAAAGAGCTTG
GGATGGATGACCAAATGAACAGCAGCGTCTACGAGGGTTACGACACCTGG
TCTTGGGCAAAAGGGGCCGAGAAAGTCCGCATCGACTCCCCCCACTCCTC
CCCCGAAGACCAAAAAAAGGCTTTACAACGTCATCTCATCAGTGTCATTG
ATGAGGGCGTTTACCAGCGCGGGGTTTTCAAGAGGCTGGCCAAGCGGAAG
AAGGCTGCCGCCCTCTTCCTCATCACGGGCGGGGCCGTGAGCAAGCGGGC
CCGTCGTCGCGCCCGCTCCATTTTCCTTAATTACATCAACGACGCCGGTC
TCCCCCTCCTCAACGATCTGCTGCTGAATTACTCGGGCGCGGCGATCAAG
CGTGTTCTGGAGCTCCTGTCGGACAAGGAAAGATACCCTATTGCCCTCTA
CTGCACCGCGGGGAAGGACAGGACCGGTCTGGTCATCCTTCTCTTGCTGG
CCTCGCTGGGAGTCGATCCCGCGGCCATAGCCGAGGACTACGTTCTATCG
GACTCGGCCTACGCGGACTTGAGCGACGAAAAAGCCATGGTTGGGGCGTT
GGAACAGAACAACTTGGACCCCGCCAAGTTCTTGCGGGCGCCCCGATCCG
TCATCGAGCACACCCTGGCTTACATCCAAAAGAAATTCGGGTCTATCGAA
GGATATTTGGATCAAATCGGCTTCACAGAGGCCCAGAGGTCGCGGCTCAA
GGCGGCTTTAAGGGACGAGTAG
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Synonyms
Publications