NO01G00910.1, NO01G00910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00910.1
Unique NameNO01G00910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length465
Alignment locationchr1:228211..229204 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:228211..229204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G00910.1 vs.
Match: CCI44315.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 76.3 bits (186), Expect = 9.600e-11
Identity = 46/130 (35.38%), Postives = 64/130 (49.23%), Query Frame = 0
Query:   11 YAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQNQPP--PMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVIRCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYF 139
            YAKL GRI   DD+A         F+A+IT LP  LGR    P   P+  G              ++LG  K +SR HA I W+  K C+ + C  KNG+ VN    A ++   L+ ++ +R+GP   YF
Sbjct:   30 YAKLSGRI--ADDQA---------FEALITHLPTELGRGPIVPSSGPVASGSR------------ISLGEQKAISRQHAKILWNAEKCCFEMECLGKNGLFVNGSFIAKNQVIPLTSKTPIRIGPARLYF 136          
The following BLAST results are available for this feature:
BLAST of NO01G00910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CCI44315.19.600e-1135.38unnamed protein product [Albugo candida][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00910NO01G00910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00910.1NO01G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00910.1.cds1NO01G00910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00910.1.cds2NO01G00910.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00910.1.cds3NO01G00910.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00910.1 ID=NO01G00910.1|Name=NO01G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=465bp
ATGGAGGTGGAGGACGACGGCGACACAGGCTATGCCAAGCTCATCGGCCG
CATATTTTACGTCGACGATGAAGCACGGGCCAAAGGCGTCAGAGAAGAAG
ATTTCGACGCCATCATCACTGCACTGCCCGCACGCCTGGGCCGGCACCAG
AATCAACCCCCCCCTATGATGAAAGGAGAGGAGGGGGGAGGGAAGGAAGG
GGAGGGGGAAGGATGCTTCGTGGCCTTGGGAACCACCAAGAAGGTATCGA
GGCATCACGCGACGATAAATTGGGACTTTATTAAGGGGTGCTACGTCATT
CGGTGTTTTTCGAAGAATGGGATGACCGTCAACAAGAAGCACTACGCAAC
GGACGAGCAAGCAATTCTCTCCGACCGCTCAGCCGTCCGAATGGGCCCGG
TCAACTTCTATTTCCACCTGCCACCAACAGGGGGGAAGGGGAGGGAGGAA
GGGAGGAAGGTTTGA
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protein sequence of NO01G00910.1

>NO01G00910.1-protein ID=NO01G00910.1-protein|Name=NO01G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MEVEDDGDTGYAKLIGRIFYVDDEARAKGVREEDFDAIITALPARLGRHQ
NQPPPMMKGEEGGGKEGEGEGCFVALGTTKKVSRHHATINWDFIKGCYVI
RCFSKNGMTVNKKHYATDEQAILSDRSAVRMGPVNFYFHLPPTGGKGREE
GRKV*
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mRNA from alignment at chr1:228211..229204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00910.1 ID=NO01G00910.1|Name=NO01G00910.1|organism=Nannochloropsis oceanica|type=mRNA|length=994bp|location=Sequence derived from alignment at chr1:228211..229204- (Nannochloropsis oceanica)
ATGGAGGTGGAGGACGACGGCGACACAGGTAATCACTCTAGTGTGACTTC TACTTTTTAGCCCTCTACCTTCCACCCTCCCTCTCTCGCAACCTCTGTTC TCCATACTCCACCTCTGTGCCTCCTCGATTCCTCCCTCTCTTTCCATTTC GCCATTCAATAAGCACCTCAGAATTTCTGCCTTGTCCTTTTTGATAAACA TGCCGTTCATGATGCGGTCGATAATTTCTCTCTTGTACTGTCTCCAACTC ACTCCCTTGCCTCCCTCCCCCCCTTTGCCGGTTCTCTTTCCCTCCCTCCT CCAAGGCTATGCCAAGCTCATCGGCCGCATATTTTACGTCGACGATGAAG CACGGGCCAAAGGCGTCAGAGAAGAAGATTTCGACGCCATCATCACTGCA CTGCCCGCACGCCTGGGCCGGCACCAGAATCAACCCCCCCCTATGATGAA AGGAGAGGAGGGGGGAGGGAAGGAAGGGGAGGGGGAAGGATGCTTCGTGG CCTTGGGAACCACCAAGAAGGTATCGAGGCATCACGCGACGATAAATTGG GACTTTATTAAGGGGTGCTACGTCATTCGGTGTTTTTCGAAGAATGGGAT GGTACGGCTGGGGGGAGACCGCGGCAAGAAGATCGATGTCTCTCGTGGGT CAATAGGAAAGAAGGCCGAATGCACGCGAATACTCCTATCTCATCATTCA TCTTCCTCCCTTCTTTCTTCCTTCCTTTCTTCGATCGTGAGCCGAACGCA CTCCGAGACCGTGTGACAAGCCGCCCCTCCCTTCCTCCTTCCCTCCCTCC CTCCTTTCCTTGACCCAAACCTTTCCTCTCTCATTCTCCCTCCGTCCACG CAGACCGTCAACAAGAAGCACTACGCAACGGACGAGCAAGCAATTCTCTC CGACCGCTCAGCCGTCCGAATGGGCCCGGTCAACTTCTATTTCCACCTGC CACCAACAGGGGGGAAGGGGAGGGAGGAAGGGAGGAAGGTTTGA
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Coding sequence (CDS) from alignment at chr1:228211..229204-

>NO01G00910.1 ID=NO01G00910.1|Name=NO01G00910.1|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at chr1:228211..229204- (Nannochloropsis oceanica)
ATGGAGGTGGAGGACGACGGCGACACAGGCTATGCCAAGCTCATCGGCCG
CATATTTTACGTCGACGATGAAGCACGGGCCAAAGGCGTCAGAGAAGAAG
ATTTCGACGCCATCATCACTGCACTGCCCGCACGCCTGGGCCGGCACCAG
AATCAACCCCCCCCTATGATGAAAGGAGAGGAGGGGGGAGGGAAGGAAGG
GGAGGGGGAAGGATGCTTCGTGGCCTTGGGAACCACCAAGAAGGTATCGA
GGCATCACGCGACGATAAATTGGGACTTTATTAAGGGGTGCTACGTCATT
CGGTGTTTTTCGAAGAATGGGATGACCGTCAACAAGAAGCACTACGCAAC
GGACGAGCAAGCAATTCTCTCCGACCGCTCAGCCGTCCGAATGGGCCCGG
TCAACTTCTATTTCCACCTGCCACCAACAGGGGGGAAGGGGAGGGAGGAA
GGGAGGAAGGTTTGA
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Synonyms
Publications