NO01G00880.1, NO01G00880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00880.1
Unique NameNO01G00880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1403
Alignment locationchr1:225841..227243 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:225841..227243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00880.1 vs.
Match: XP_005855136.1 (rrna processing protein, partial [Nannochloropsis gaditana CCMP526]; EKU21224.1 rrna processing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 240.7 bits (613), Expect = 8.100e-60
Identity = 198/400 (49.50%), Postives = 246/400 (61.50%), Query Frame = 0 
Query:   24 RNDTGKPRGDMQEKALSYMQRIRNRAEIEPSSDEDEEEGQGEVERRGDDDGKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGQHFGQGYDSDASVSSSSGS--------GSGKEEKQRQYATALKVVKTLPLVERLALMASGVEGGGGVGAGRGRKERRRAHQENNDKKFSHKSQDKEDVRKGINKHAPKEISSKKPVGRFRVVIEPSTSSTATAAGTHGTHGRRRKARDPRFDPAMGNVNYDAFRKAYGFLEEYEEREIQALQAALGKGGGEGGKEGQGKKKLAAMRKEGKGREGEVKQALSRLMQERSERQRFERRDAVLRATKKEERAKVAAGIKTPYYLKKKEKRRVELLDRYEHLAKEGRLGKALEKKRKRNAAKDHRWLPRSRRE 416
            R DT   +G  + +  +YMQRIR+RA IEPSS                                EEEEEEE  E     E+E     EE G+H G+G++S+ + SSS+          G G E  ++  +T    +K+LP+ ERL L+ASG  GGG     R R+ R    QE ND K   +  ++    KG NKHAPKE+SSKKPV R R V       +    G+ G    RRKARDPRFDPA+G VNY+AFRKAYGFLEEYE REIQ LQ ALGKG G G +  Q +      R+EG+GRE EVK+AL++L+Q R ER+ FER+++VL+  K+ ER+KV+AG K P+YLKKKEKRR+EL DRYE LAKEG+L   LEKKRKRNAAKDHRWLPRSRRE
Sbjct:   32 REDTPGKKGTKRGEEDAYMQRIRSRANIEPSS--------------------------------EEEEEEESLERVSWHEKEAGMPVEERGEHVGKGHESETTTSSSTDDSDASSDRDGEGDERDEQVRST----LKSLPMAERLVLLASGAHGGG-----RRRQLRVETVQECNDDKGKEEQPERS---KGHNKHAPKEVSSKKPVSRLRPVFP-----SGPVGGSQGK-AARRKARDPRFDPALGKVNYEAFRKAYGFLEEYEAREIQTLQTALGKGKGVGTRREQQQ-----TRREGRGREEEVKEALAKLVQRRREREGFERKESVLQERKRAERSKVSAG-KEPFYLKKKEKRRLELEDRYERLAKEGKLKAVLEKKRKRNAAKDHRWLPRSRRE 375
The following BLAST results are available for this feature:
BLAST of NO01G00880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855136.18.100e-6049.50rrna processing protein, partial [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00880NO01G00880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00880.1NO01G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00880.1.cds1NO01G00880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00880.1 ID=NO01G00880.1|Name=NO01G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1403bp
ACAGAAACCAAAGACAGACAAGCCTACGCAGCAGCAGCCCTACACGCTGT
CAAAGTCACGATGGGCAAGGTCCGATTCGACGACCTGGATAAATACAGAA
ACGACAAGCAGAAGAGAAAAGCAGTGGGCCGCAATGATACTGGTAAGCCT
CGCGGCGACATGCAAGAGAAAGCCTTGTCGTACATGCAGCGCATCCGCAA
TCGGGCCGAGATAGAGCCATCAAGTGACGAAGACGAAGAGGAGGGGCAAG
GGGAGGTAGAGAGGCGCGGGGACGATGACGGTAAAGAGGAGGAGGAGGAA
GAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAAGAGGAAGAGG
GGCAGCATTTCGGTCAAGGGTACGACTCGGATGCCTCTGTCTCATCGTCA
AGTGGCAGCGGCTCGGGAAAAGAGGAGAAACAGAGGCAATATGCGACCGC
CTTGAAGGTGGTGAAAACATTACCCTTGGTAGAAAGGCTGGCACTGATGG
CCTCGGGCGTTGAGGGAGGAGGAGGAGTGGGAGCAGGACGCGGACGGAAG
GAGCGCCGACGGGCCCATCAAGAGAACAATGACAAGAAATTTTCCCACAA
GAGCCAAGACAAAGAGGATGTCAGAAAGGGCATCAATAAACACGCGCCGA
AAGAAATTTCCTCCAAAAAACCTGTCGGTCGGTTTCGGGTCGTCATTGAG
CCGTCCACTTCCTCTACTGCCACTGCTGCCGGGACGCATGGTACGCACGG
ACGTCGTCGGAAAGCGCGTGATCCTCGCTTTGACCCTGCGATGGGTAACG
TTAATTATGACGCCTTTCGCAAGGCTTATGGATTTTTGGAGGAGTATGAG
GAAAGGGAAATCCAGGCATTACAAGCAGCGTTGGGGAAGGGGGGGGGGGA
GGGAGGGAAGGAGGGGCAAGGAAAGAAGAAGCTGGCGGCGATGAGAAAAG
AAGGGAAAGGGAGAGAGGGGGAGGTGAAGCAGGCGTTGAGTCGGCTGATG
CAGGAGAGGAGTGAACGGCAGCGGTTCGAGAGGAGAGATGCTGTTTTACG
TGCCACCAAGAAGGAGGAAAGAGCCAAGGTGGCCGCCGGGATCAAAACGC
CCTATTATCTAAAGAAGAAGGAGAAGAGGCGGGTGGAGCTGTTGGACCGT
TACGAGCATTTGGCGAAGGAGGGGAGGCTAGGCAAGGCCCTGGAGAAGAA
GAGGAAGAGAAACGCAGCGAAGGACCATAGATGGCTGCCACGGAGTAGGA
GGGAAGAGGGGCAGGGCGGGGATGAAGAGTAGAGGGGGTGGATGTAAAGA
CGATGGGGGGAAAGCGACGGAGAGAAAAGGAAACTAAATAAATGATTGTG
TTG
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protein sequence of NO01G00880.1

>NO01G00880.1-protein ID=NO01G00880.1-protein|Name=NO01G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MGKVRFDDLDKYRNDKQKRKAVGRNDTGKPRGDMQEKALSYMQRIRNRAE
IEPSSDEDEEEGQGEVERRGDDDGKEEEEEEEEEEEEEEEEEEEEEEEEE
EEEEEEEEEEEEEGQHFGQGYDSDASVSSSSGSGSGKEEKQRQYATALKV
VKTLPLVERLALMASGVEGGGGVGAGRGRKERRRAHQENNDKKFSHKSQD
KEDVRKGINKHAPKEISSKKPVGRFRVVIEPSTSSTATAAGTHGTHGRRR
KARDPRFDPAMGNVNYDAFRKAYGFLEEYEEREIQALQAALGKGGGEGGK
EGQGKKKLAAMRKEGKGREGEVKQALSRLMQERSERQRFERRDAVLRATK
KEERAKVAAGIKTPYYLKKKEKRRVELLDRYEHLAKEGRLGKALEKKRKR
NAAKDHRWLPRSRREEGQGGDEE*
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mRNA from alignment at chr1:225841..227243+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00880.1 ID=NO01G00880.1|Name=NO01G00880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1403bp|location=Sequence derived from alignment at chr1:225841..227243+ (Nannochloropsis oceanica)
ACAGAAACCAAAGACAGACAAGCCTACGCAGCAGCAGCCCTACACGCTGT
CAAAGTCACGATGGGCAAGGTCCGATTCGACGACCTGGATAAATACAGAA
ACGACAAGCAGAAGAGAAAAGCAGTGGGCCGCAATGATACTGGTAAGCCT
CGCGGCGACATGCAAGAGAAAGCCTTGTCGTACATGCAGCGCATCCGCAA
TCGGGCCGAGATAGAGCCATCAAGTGACGAAGACGAAGAGGAGGGGCAAG
GGGAGGTAGAGAGGCGCGGGGACGATGACGGTAAAGAGGAGGAGGAGGAA
GAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAAGAGGAAGAGG
GGCAGCATTTCGGTCAAGGGTACGACTCGGATGCCTCTGTCTCATCGTCA
AGTGGCAGCGGCTCGGGAAAAGAGGAGAAACAGAGGCAATATGCGACCGC
CTTGAAGGTGGTGAAAACATTACCCTTGGTAGAAAGGCTGGCACTGATGG
CCTCGGGCGTTGAGGGAGGAGGAGGAGTGGGAGCAGGACGCGGACGGAAG
GAGCGCCGACGGGCCCATCAAGAGAACAATGACAAGAAATTTTCCCACAA
GAGCCAAGACAAAGAGGATGTCAGAAAGGGCATCAATAAACACGCGCCGA
AAGAAATTTCCTCCAAAAAACCTGTCGGTCGGTTTCGGGTCGTCATTGAG
CCGTCCACTTCCTCTACTGCCACTGCTGCCGGGACGCATGGTACGCACGG
ACGTCGTCGGAAAGCGCGTGATCCTCGCTTTGACCCTGCGATGGGTAACG
TTAATTATGACGCCTTTCGCAAGGCTTATGGATTTTTGGAGGAGTATGAG
GAAAGGGAAATCCAGGCATTACAAGCAGCGTTGGGGAAGGGGGGGGGGGA
GGGAGGGAAGGAGGGGCAAGGAAAGAAGAAGCTGGCGGCGATGAGAAAAG
AAGGGAAAGGGAGAGAGGGGGAGGTGAAGCAGGCGTTGAGTCGGCTGATG
CAGGAGAGGAGTGAACGGCAGCGGTTCGAGAGGAGAGATGCTGTTTTACG
TGCCACCAAGAAGGAGGAAAGAGCCAAGGTGGCCGCCGGGATCAAAACGC
CCTATTATCTAAAGAAGAAGGAGAAGAGGCGGGTGGAGCTGTTGGACCGT
TACGAGCATTTGGCGAAGGAGGGGAGGCTAGGCAAGGCCCTGGAGAAGAA
GAGGAAGAGAAACGCAGCGAAGGACCATAGATGGCTGCCACGGAGTAGGA
GGGAAGAGGGGCAGGGCGGGGATGAAGAGTAGAGGGGGTGGATGTAAAGA
CGATGGGGGGAAAGCGACGGAGAGAAAAGGAAACTAAATAAATGATTGTG
TTG
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Coding sequence (CDS) from alignment at chr1:225841..227243+

>NO01G00880.1 ID=NO01G00880.1|Name=NO01G00880.1|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at chr1:225841..227243+ (Nannochloropsis oceanica)
ATGGGCAAGGTCCGATTCGACGACCTGGATAAATACAGAAACGACAAGCA
GAAGAGAAAAGCAGTGGGCCGCAATGATACTGGTAAGCCTCGCGGCGACA
TGCAAGAGAAAGCCTTGTCGTACATGCAGCGCATCCGCAATCGGGCCGAG
ATAGAGCCATCAAGTGACGAAGACGAAGAGGAGGGGCAAGGGGAGGTAGA
GAGGCGCGGGGACGATGACGGTAAAGAGGAGGAGGAGGAAGAGGAAGAGG
AAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAAGAGGAGGAGGAAGAGGAGGAGGAAGAAGAGGAAGAGGGGCAGCATTT
CGGTCAAGGGTACGACTCGGATGCCTCTGTCTCATCGTCAAGTGGCAGCG
GCTCGGGAAAAGAGGAGAAACAGAGGCAATATGCGACCGCCTTGAAGGTG
GTGAAAACATTACCCTTGGTAGAAAGGCTGGCACTGATGGCCTCGGGCGT
TGAGGGAGGAGGAGGAGTGGGAGCAGGACGCGGACGGAAGGAGCGCCGAC
GGGCCCATCAAGAGAACAATGACAAGAAATTTTCCCACAAGAGCCAAGAC
AAAGAGGATGTCAGAAAGGGCATCAATAAACACGCGCCGAAAGAAATTTC
CTCCAAAAAACCTGTCGGTCGGTTTCGGGTCGTCATTGAGCCGTCCACTT
CCTCTACTGCCACTGCTGCCGGGACGCATGGTACGCACGGACGTCGTCGG
AAAGCGCGTGATCCTCGCTTTGACCCTGCGATGGGTAACGTTAATTATGA
CGCCTTTCGCAAGGCTTATGGATTTTTGGAGGAGTATGAGGAAAGGGAAA
TCCAGGCATTACAAGCAGCGTTGGGGAAGGGGGGGGGGGAGGGAGGGAAG
GAGGGGCAAGGAAAGAAGAAGCTGGCGGCGATGAGAAAAGAAGGGAAAGG
GAGAGAGGGGGAGGTGAAGCAGGCGTTGAGTCGGCTGATGCAGGAGAGGA
GTGAACGGCAGCGGTTCGAGAGGAGAGATGCTGTTTTACGTGCCACCAAG
AAGGAGGAAAGAGCCAAGGTGGCCGCCGGGATCAAAACGCCCTATTATCT
AAAGAAGAAGGAGAAGAGGCGGGTGGAGCTGTTGGACCGTTACGAGCATT
TGGCGAAGGAGGGGAGGCTAGGCAAGGCCCTGGAGAAGAAGAGGAAGAGA
AACGCAGCGAAGGACCATAGATGGCTGCCACGGAGTAGGAGGGAAGAGGG
GCAGGGCGGGGATGAAGAGTAG
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Synonyms
Publications