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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:206773..209518 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00820.1 vs.
Match: EWM29012.1 (RNA helicase DEAD-box type [Nannochloropsis gaditana]) HSP 1 Score: 727.6 bits (1877), Expect = 3.500e-206 Identity = 406/643 (63.14%), Postives = 478/643 (74.34%), Query Frame = 0
Query: 46 STTTTTTMISLVYLLLFHHHGVMATVATNPFGRSSSSSSGSRSSRGSTAFLWLPQQQHRLLSTTSSSRRHHPHEY-----WP--TPAHMLTQRRHYATAGSSSSSFDEDLPANTGTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTRPAPDVLVCTPATLSFFDRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGG-EGKEDDEDAASLPLPLPKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEESLDRSFSRQRGFRKKVKKYGRDYYRKPGGAYRGEGWEEEAKGRRVKGGKVVFEEGREGEEREEEGRRG 681
+TTTTTT++S+ YL+L H H AT+ GR S+S GSR S AF+ P R L + + HEY WP T R + G+ S EDL ANTGTFG +PFA+LGLSPWL +AL+ AGK STHIQAL+LP+IL G +VVIGSETGAGKTLAYLLPV++LAHRA ART + + + YY ER+ ALK GA G E + LAED+PWE PFAIVLVPN QLSEQVL+M E+L G+GE E R++AL GSV+ WP+ +R APDVLVCTPATLS FDR++ LF V ++VVDEADMLLEGDYGRHL+RILVAFKRADKLH RSEP TQYVLAAATLP+YGLKSVEELV+KRFPSA+RV+TD+MH+HHP+LTQ+FVEAP L+ KI ML +VL++L+ KG EGG EG ++ E A + LPKTM+FLNTA AAAR A+ A FPSVAFHK++R +RE NL++FRSN VPLLVCTDLA+RGLDIPDV+QV+QVEFAPNVVQHLHRIGRAVRAGREGRAVNFYD G+ DLVESLQLA ++L+RSFSRQRGFRKK+KKYGRDYYR PGGAYRG GWEEEAKGR GR+GE EEGR G
Sbjct: 39 TTTTTTTVLSIFYLILSHSHSSTATLVDKRAGRGSTS--GSRCSSSKRAFIQ-PSTPGRHLPKDHTGL-YVGHEYMSHLSWPLGTKTRPCGGVRRCTSMGTPSQG--EDLTANTGTFGENIPFAALGLSPWLTAALSGAGKATSTHIQALALPTILAGENVVIGSETGAGKTLAYLLPVMELAHRAHAARTAMKEKALAYYQERRGALKEGAGGRERVGEYSSLAEDYPWEAPFAIVLVPNGQLSEQVLRMAGEVL----GQGEGEENVRVEALKGSVDVWPYRVGSRAAPDVLVCTPATLSSFDREVNLFGEVNILVVDEADMLLEGDYGRHLERILVAFKRADKLHTARSEPLTQYVLAAATLPSYGLKSVEELVKKRFPSAVRVHTDLMHKHHPQLTQVFVEAPEDLEGKIAMLLQVLEKLRTKGEEARRAEGGKEGGKEGEGEAQATI-LPKTMVFLNTATAAARTQIAVQAAGFPSVAFHKEVRREEREANLQRFRSNQVPLLVCTDLAARGLDIPDVRQVVQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDLGAHDLVESLQLAQADTLERSFSRQRGFRKKIKKYGRDYYRLPGGAYRGPGWEEEAKGR-----------GRKGEGGGEEGRGG 659
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00820.1 ID=NO01G00820.1|Name=NO01G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2662bp
CGTCACTCTATCGTTGCTTTATTTACGTTTGGGTTCGCCTATCGCATTCC
AATAAAGGCTATGGACAATTTTTCACATTGCATCAGCAGTGGCAACTTGG
CGTGGCCCAGAAGGTAATCAGGAGCATTCTCACCTCCAGGAAGCTTTGAA
AAACAAACCCTCTTCAGTCCTGTCATGCTCGAGCAAGCAGTCGGGCAAGG
CTTGCGGCGGCATGGTGATTGCCCTAGGACGCCCACTTTAGATCTGCTCG
CGGCGGGCATGAGCCTAGATATAGAGGTAGGTGCCAAGGGAGCAGGAGTC
CCCCTGTCTCGCTCAGATAAACCCAAGAGGCCATGGTTACATGTCATTTA
CGCGGACAAGCTCGTCAGAATCAAGGTTGAAAGACGACGTACGCGCCTGA
GCGCGGTGATGACGACTCGTCGGATGTTGCCTCGCTCCCGAAATGTGGCC
TCTCTCACACTCATCTCATTTCTCCCCGGCACACCATACAACGATACGCT
GACACAGCTGCAGAGGAGACGCAATGCGCGTCTTTTCGTCGAGGTCACGG
GCTTGGGGCCTGGAATGGCGCACCACTACAAACGGTAGTGCAACAGCAAC
TTTCGCCTTGCCCCACTGCACCAGTACCAGTAGCCGCCCAGCCCAACCAT
CATCAGGCTCGACCACCACCACCACCACGATGATCAGCTTGGTCTACCTT
CTGCTATTTCACCATCACGGCGTCATGGCAACGGTCGCCACGAACCCCTT
CGGACGCAGTAGCAGCAGTAGCAGCGGCAGCAGAAGCAGCAGGGGTAGCA
CGGCCTTTCTATGGCTGCCGCAGCAACAGCATCGCCTCCTGTCTACCACC
AGCAGCAGCCGGCGGCACCACCCGCATGAGTATTGGCCTACTCCAGCCCA
CATGCTTACACAAAGAAGACACTACGCCACGGCGGGTTCCTCCTCCTCGT
CCTTTGACGAGGACCTACCAGCCAACACAGGCACGTTTGGAGCCCAAGTC
CCCTTCGCCTCCCTTGGCCTTTCCCCCTGGCTTGTCTCCGCGTTGAACGC
CGCAGGAAAACCCATCTCGACGCATATCCAGGCCCTGAGCCTCCCGTCCA
TCCTGGAGGGCAACGACGTGGTGATAGGGAGTGAAACTGGAGCAGGCAAG
ACGCTGGCCTACCTTCTCCCTGTCTTGGACCTTGCTCACCGCGCAGCCCC
CGCTCGGACCGAGGCCCAGATACGCGAGATGGAATATTATATGGAGCGGA
AAGCCGCATTGAAAGGCGGGGCAGCGGGTTGGGAGGGGGATAATCGCTTG
ACGCCTTTGGCGGAGGACTTTCCGTGGGAGACCCCGTTTGCAATCGTCCT
CGTCCCCAACAGGCAGTTAAGTGAGCAGGTGCTGCAGATGGGCAGGGAGT
TGTTGACACAACAGAAAGGAGAGGGGGAGCGTGAGGGAAGACCGAGAATC
GATGCGTTGGCGGGGAGTGTGGAGGAGTGGCCGTTTCACCCGAAGACACG
GCCGGCGCCGGATGTGCTTGTGTGCACCCCGGCTACTTTATCATTTTTCG
ATAGGGACATTGGGCTGTTTAGTCGGGTGGGAATGGTGGTGGTGGATGAG
GCCGACATGCTGCTGGAGGGCGACTATGGGCGGCACTTGGATAGGATTTT
GGTGGCCTTCAAACGCGCCGATAAACTCCACGTGATCCGCTCAGAGCCCT
CCACCCAATACGTTCTGGCGGCGGCCACTCTCCCTACCTACGGGTTGAAG
TCCGTCGAGGAACTCGTCCGGAAACGGTTTCCCTCGGCGATGCGTGTAAA
TACGGACATGATGCACAGGCACCATCCGAAGCTCACTCAATTGTTTGTCG
AAGCTCCGATAGGACTGGATGAAAAGATTGGTATGCTCAAAAAGGTGTTG
CAGAGATTGCAGGAGAAGGGACGAGCATTAGCAGCGAAGGAGGGAGGAGA
AGGGAAGGAGGACGACGAGGACGCTGCTTCTCTCCCTCTCCCTCTTCCCA
AGACGATGATTTTCCTCAACACGGCCCAAGCGGCCGCAAGGGTGCATGAC
GCCCTGGCACAGGCAGACTTCCCCTCCGTTGCCTTTCACAAGGACATCCG
TTCCAGTGACCGCGAAGAGAACCTGCGGCAATTCCGCTCCAATTCTGTGC
CGTTATTGGTGTGTACAGACCTGGCGTCTCGGGGCTTGGACATACCGGAC
GTTAAGCAGGTGATTCAAGTTGAATTTGCGCCTAATGTTGTGCAGCACCT
CCATCGGATAGGGAGGGCCGTCAGGGCAGGGAGGGAGGGAAGAGCTGTGA
ATTTTTATGATGAAGGGTCGACGGATTTGGTGGAAAGCCTGCAACTGGCC
GGGGAGGAGAGCCTGGATCGGTCGTTTTCCCGACAGCGAGGGTTCAGGAA
GAAGGTGAAGAAATACGGGCGGGATTATTATAGGAAGCCGGGGGGGGCAT
ATAGAGGGGAAGGGTGGGAGGAGGAGGCAAAAGGGCGCCGTGTGAAGGGG
GGGAAGGTCGTGTTTGAGGAGGGGAGGGAAGGAGAGGAGAGGGAGGAGGA
GGGAAGGAGAGGAGGAGGATGACGAGGAGAAGGAGGAAGAGGAGGAGGAG
GAGGAGGAGGACCAGAAAGAGGGCGGTTGGAATTGGTGGCTTGAGAAGGG
AATAAGAAAAGC back to topprotein sequence of NO01G00820.1 >NO01G00820.1-protein ID=NO01G00820.1-protein|Name=NO01G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=683bp
MRVFSSRSRAWGLEWRTTTNGSATATFALPHCTSTSSRPAQPSSGSTTTT
TTMISLVYLLLFHHHGVMATVATNPFGRSSSSSSGSRSSRGSTAFLWLPQ
QQHRLLSTTSSSRRHHPHEYWPTPAHMLTQRRHYATAGSSSSSFDEDLPA
NTGTFGAQVPFASLGLSPWLVSALNAAGKPISTHIQALSLPSILEGNDVV
IGSETGAGKTLAYLLPVLDLAHRAAPARTEAQIREMEYYMERKAALKGGA
AGWEGDNRLTPLAEDFPWETPFAIVLVPNRQLSEQVLQMGRELLTQQKGE
GEREGRPRIDALAGSVEEWPFHPKTRPAPDVLVCTPATLSFFDRDIGLFS
RVGMVVVDEADMLLEGDYGRHLDRILVAFKRADKLHVIRSEPSTQYVLAA
ATLPTYGLKSVEELVRKRFPSAMRVNTDMMHRHHPKLTQLFVEAPIGLDE
KIGMLKKVLQRLQEKGRALAAKEGGEGKEDDEDAASLPLPLPKTMIFLNT
AQAAARVHDALAQADFPSVAFHKDIRSSDREENLRQFRSNSVPLLVCTDL
ASRGLDIPDVKQVIQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYDEGST
DLVESLQLAGEESLDRSFSRQRGFRKKVKKYGRDYYRKPGGAYRGEGWEE
EAKGRRVKGGKVVFEEGREGEEREEEGRRGGG* back to topmRNA from alignment at chr1:206773..209518+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00820.1 ID=NO01G00820.1|Name=NO01G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2746bp|location=Sequence derived from alignment at chr1:206773..209518+ (Nannochloropsis oceanica)
CGTCACTCTATCGTTGCTTTATTTACGTTTGGGTTCGCCTATCGCATTCC
AATAAAGGCTATGGACAATTTTTCACATTGCATCAGCAGTGGCAACTTGG
CGTGGCCCAGAAGGTAATCAGGAGCATTCTCACCTCCAGGAAGCTTTGAA
AAACAAACCCTCTTCAGTCCTGTCATGCTCGAGCAAGCAGTCGGGCAAGG
CTTGCGGCGGCATGGTGATTGCCCTAGGACGCCCACTTTAGATCTGCTCG
CGGCGGGCATGAGCCTAGATATAGAGGTAGGTGCCAAGGGAGCAGGAGTC
CCCCTGTCTCGCTCAGATAAACCCAAGAGGCCATGGTTACATGTCATTTA
CGCGGACAAGCTCGTCAGAATCAAGGTTGAAAGACGACGTACGCGCCTGA
GCGCGGTGATGACGACTCGTCGGATGTTGCCTCGCTCCCGAAATGTGGCC
TCTCTCACACTCATCTCATTTCTCCCCGGCACACCATACAACGATACGCT
GACACAGCTGCAGAGGAGACGCAATGCGCGTCTTTTCGTCGAGGTCACGG
GCTTGGGGCCTGGAATGGCGCACCACTACAAACGGTAGTGCAACAGCAAC
TTTCGCCTTGCCCCACTGCACCAGTACCAGTAGCCGCCCAGCCCAACCAT
CATCAGGCTCGACCACCACCACCACCACGATGATCAGCTTGGTCTACCTT
CTGCTATTTCACCATCACGGCGTCATGGCAACGGTCGCCACGAACCCCTT
CGGACGCAGTAGCAGCAGTAGCAGCGGCAGCAGAAGCAGCAGGGGTAGCA
CGGCCTTTCTATGGCTGCCGCAGCAACAGCATCGCCTCCTGTCTACCACC
AGCAGCAGCCGGCGGCACCACCCGCATGAGTATTGGCCTACTCCAGCCCA
CATGCTTACACAAAGAAGACACTACGCCACGGCGGGTTCCTCCTCCTCGT
CCTTTGACGAGGACCTACCAGCCAACACAGGCACGTTTGGAGCCCAAGTC
CCCTTCGCCTCCCTTGGCCTTTCCCCCTGGCTTGTCTCCGCGTTGAACGC
CGCAGGAAAACCCATCTCGACGCATATCCAGGCCCTGAGCCTCCCGTCCA
TCCTGGAGGGCAACGACGTGGTGATAGGGAGTGAAACTGGAGCAGGCAAG
ACGCTGGCCTACCTTCTCCCTGTCTTGGACCTTGCTCACCGCGCAGCCCC
CGCTCGGACCGAGGCCCAGATACGCGAGATGGAATATTATATGGAGCGGA
AAGCCGCATTGAAAGGCGGGGCAGCGGGTTGGGAGGGGGATAATCGCTTG
ACGCCTTTGGCGGAGGACTTTCCGTGGGAGACCCCGTTTGCAATCGTCCT
CGTCCCCAACAGGCAGTTAAGTGAGCAGGTGCTGCAGATGGGCAGGGAGT
TGTTGACACAACAGAAAGGAGAGGGGGAGCGTGAGGGAAGACCGAGAATC
GATGCGTTGGCGGGGAGTGTGGAGGAGTGGCCGTTTCACCCGAAGACACG
GCCGGCGCCGGATGTGCTTGTGTGCACCCCGGCTACTTTATCATTTTTCG
ATAGGGACATTGGGCTGTTTAGTCGGGTGGGAATGGTGGTGGTGGATGAG
GCCGACATGCTGCTGGAGGGCGACTATGGGCGGCACTTGGATAGGATTTT
GGTGGCCTTCAAACGGTGAGGAAAAGGGAGGGAGGGAGAAAGGGTTATCA
TTTCATAAACTACTCACCTATCCCCCATTCCGTCCCTTGCTCCCTCAAGC
GCCGATAAACTCCACGTGATCCGCTCAGAGCCCTCCACCCAATACGTTCT
GGCGGCGGCCACTCTCCCTACCTACGGGTTGAAGTCCGTCGAGGAACTCG
TCCGGAAACGGTTTCCCTCGGCGATGCGTGTAAATACGGACATGATGCAC
AGGCACCATCCGAAGCTCACTCAATTGTTTGTCGAAGCTCCGATAGGACT
GGATGAAAAGATTGGTATGCTCAAAAAGGTGTTGCAGAGATTGCAGGAGA
AGGGACGAGCATTAGCAGCGAAGGAGGGAGGAGAAGGGAAGGAGGACGAC
GAGGACGCTGCTTCTCTCCCTCTCCCTCTTCCCAAGACGATGATTTTCCT
CAACACGGCCCAAGCGGCCGCAAGGGTGCATGACGCCCTGGCACAGGCAG
ACTTCCCCTCCGTTGCCTTTCACAAGGACATCCGTTCCAGTGACCGCGAA
GAGAACCTGCGGCAATTCCGCTCCAATTCTGTGCCGTTATTGGTGTGTAC
AGACCTGGCGTCTCGGGGCTTGGACATACCGGACGTTAAGCAGGTGATTC
AAGTTGAATTTGCGCCTAATGTTGTGCAGCACCTCCATCGGATAGGGAGG
GCCGTCAGGGCAGGGAGGGAGGGAAGAGCTGTGAATTTTTATGATGAAGG
GTCGACGGATTTGGTGGAAAGCCTGCAACTGGCCGGGGAGGAGAGCCTGG
ATCGGTCGTTTTCCCGACAGCGAGGGTTCAGGAAGAAGGTGAAGAAATAC
GGGCGGGATTATTATAGGAAGCCGGGGGGGGCATATAGAGGGGAAGGGTG
GGAGGAGGAGGCAAAAGGGCGCCGTGTGAAGGGGGGGAAGGTCGTGTTTG
AGGAGGGGAGGGAAGGAGAGGAGAGGGAGGAGGAGGGAAGGAGAGGAGGA
GGATGACGAGGAGAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGACCAGA
AAGAGGGCGGTTGGAATTGGTGGCTTGAGAAGGGAATAAGAAAAGC back to topCoding sequence (CDS) from alignment at chr1:206773..209518+ >NO01G00820.1 ID=NO01G00820.1|Name=NO01G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=2049bp|location=Sequence derived from alignment at chr1:206773..209518+ (Nannochloropsis oceanica)
ATGCGCGTCTTTTCGTCGAGGTCACGGGCTTGGGGCCTGGAATGGCGCAC
CACTACAAACGGTAGTGCAACAGCAACTTTCGCCTTGCCCCACTGCACCA
GTACCAGTAGCCGCCCAGCCCAACCATCATCAGGCTCGACCACCACCACC
ACCACGATGATCAGCTTGGTCTACCTTCTGCTATTTCACCATCACGGCGT
CATGGCAACGGTCGCCACGAACCCCTTCGGACGCAGTAGCAGCAGTAGCA
GCGGCAGCAGAAGCAGCAGGGGTAGCACGGCCTTTCTATGGCTGCCGCAG
CAACAGCATCGCCTCCTGTCTACCACCAGCAGCAGCCGGCGGCACCACCC
GCATGAGTATTGGCCTACTCCAGCCCACATGCTTACACAAAGAAGACACT
ACGCCACGGCGGGTTCCTCCTCCTCGTCCTTTGACGAGGACCTACCAGCC
AACACAGGCACGTTTGGAGCCCAAGTCCCCTTCGCCTCCCTTGGCCTTTC
CCCCTGGCTTGTCTCCGCGTTGAACGCCGCAGGAAAACCCATCTCGACGC
ATATCCAGGCCCTGAGCCTCCCGTCCATCCTGGAGGGCAACGACGTGGTG
ATAGGGAGTGAAACTGGAGCAGGCAAGACGCTGGCCTACCTTCTCCCTGT
CTTGGACCTTGCTCACCGCGCAGCCCCCGCTCGGACCGAGGCCCAGATAC
GCGAGATGGAATATTATATGGAGCGGAAAGCCGCATTGAAAGGCGGGGCA
GCGGGTTGGGAGGGGGATAATCGCTTGACGCCTTTGGCGGAGGACTTTCC
GTGGGAGACCCCGTTTGCAATCGTCCTCGTCCCCAACAGGCAGTTAAGTG
AGCAGGTGCTGCAGATGGGCAGGGAGTTGTTGACACAACAGAAAGGAGAG
GGGGAGCGTGAGGGAAGACCGAGAATCGATGCGTTGGCGGGGAGTGTGGA
GGAGTGGCCGTTTCACCCGAAGACACGGCCGGCGCCGGATGTGCTTGTGT
GCACCCCGGCTACTTTATCATTTTTCGATAGGGACATTGGGCTGTTTAGT
CGGGTGGGAATGGTGGTGGTGGATGAGGCCGACATGCTGCTGGAGGGCGA
CTATGGGCGGCACTTGGATAGGATTTTGGTGGCCTTCAAACGCGCCGATA
AACTCCACGTGATCCGCTCAGAGCCCTCCACCCAATACGTTCTGGCGGCG
GCCACTCTCCCTACCTACGGGTTGAAGTCCGTCGAGGAACTCGTCCGGAA
ACGGTTTCCCTCGGCGATGCGTGTAAATACGGACATGATGCACAGGCACC
ATCCGAAGCTCACTCAATTGTTTGTCGAAGCTCCGATAGGACTGGATGAA
AAGATTGGTATGCTCAAAAAGGTGTTGCAGAGATTGCAGGAGAAGGGACG
AGCATTAGCAGCGAAGGAGGGAGGAGAAGGGAAGGAGGACGACGAGGACG
CTGCTTCTCTCCCTCTCCCTCTTCCCAAGACGATGATTTTCCTCAACACG
GCCCAAGCGGCCGCAAGGGTGCATGACGCCCTGGCACAGGCAGACTTCCC
CTCCGTTGCCTTTCACAAGGACATCCGTTCCAGTGACCGCGAAGAGAACC
TGCGGCAATTCCGCTCCAATTCTGTGCCGTTATTGGTGTGTACAGACCTG
GCGTCTCGGGGCTTGGACATACCGGACGTTAAGCAGGTGATTCAAGTTGA
ATTTGCGCCTAATGTTGTGCAGCACCTCCATCGGATAGGGAGGGCCGTCA
GGGCAGGGAGGGAGGGAAGAGCTGTGAATTTTTATGATGAAGGGTCGACG
GATTTGGTGGAAAGCCTGCAACTGGCCGGGGAGGAGAGCCTGGATCGGTC
GTTTTCCCGACAGCGAGGGTTCAGGAAGAAGGTGAAGAAATACGGGCGGG
ATTATTATAGGAAGCCGGGGGGGGCATATAGAGGGGAAGGGTGGGAGGAG
GAGGCAAAAGGGCGCCGTGTGAAGGGGGGGAAGGTCGTGTTTGAGGAGGG
GAGGGAAGGAGAGGAGAGGGAGGAGGAGGGAAGGAGAGGAGGAGGATGA back to top
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