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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:193240..195645 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00760.1 vs.
Match: EWM29010.1 (squalene epoxidase-like protein [Nannochloropsis gaditana]) HSP 1 Score: 841.6 bits (2173), Expect = 1.800e-240 Identity = 467/739 (63.19%), Postives = 555/739 (75.10%), Query Frame = 0
Query: 39 VASSLLLVSSLTLWQAWHQHQQTPLATTGNAVNTAKL---LLPVLGVLASLSFLCYTSLF---SSAQSQSSCDEPDTKITLGQKSTDSSFSPSTTTTSS---QLPSSSISNAEMLFRSGGVGGNRIPPRQAPSAGQTIIVVGAGTAGAAAAVGLAERGFKVLLFERDMTLQDRIVGELLQPGGVRALERLGLDECAKEGIDSVGVEGYVVFRPHKLEVEGGEEEVVKNIMLNYPAYDPASMKELFGVIDPCVSPSSSSSSSSSSLFSIPPSTEE-----VHGAGKTLSP-----HSITKARKTAGAVA---------TAATTVAQEHEPLRPKGRSFHNGRFVQRLRERALAEKNVTVIQGIVSRLVHEEDLTEGAKEGREKGKKQRVVGVEYKIETGRTLTNEEGVEVPEKETRRALAPLTIVADGLWSSLRTHVDKCAKPHQLSSFVGLIITHPFMSSPLPHAHCGHVVLAEPSPVLLYQISSTETRVLVDIHGKLPSASTGELASHLYTHILPQLPPCLQAPFAEAVARGNFKSMPNRAMPAAKLAKDGVILLGDALNMRHPLTGGGMTVALRDVEALCYLLEEPTADLTNPVAFRALKKRFATERKSWAATINVLANALHAVFSTPDGDLTRKDLRDACFDYLSIGGYCAGGPINLLSGLTPRPSILAMHFFLVAFHGVGKYVWPFPTLGGMVRMYDMLHVACQIIMPLLTVEGSTVLASWPVRTAIGVVFPYGK 750
+A +L S LW+A H+Q A+ + + A L +P+LG++ +S C ++ S + ++ DEP TK L + D S SPS + S + + SNA+ LF SGGVG R+PPR +P+AGQ+II++GAGTAGAAAAVGLAERGFKVLLFERDM+LQDRIVGELLQPGGVRALERLGLDECAKEGIDSV V+GYVVF P + + EGGE+ V++I+L YPAYDPA++KELFGVIDP SPSS ++ + S P +E+ VHGAG+ ++P +T A + + + Q L P+GRSFHNGRFVQRLR RALAE NVTV+ GIVSRL++ E RV+GVEYKI TGR + N +G EV EKE RRA+APLT+VADGLWSSLRTHVDK AKP QLSSFVGLI++HP M+SPLPH HCGHVVLA+PSPVLLYQISSTETRVLVDI G++PSASTG+LA +L THI PQLPP LQAPFA AVARG FKSMPNR+MPAA + +DGV+++GDALNMRHPLTGGGMTVALRDVEALCYLLE T DL NP A R LK RFA ERK+WAATINVLANALHAVFSTP G+ TRKDLRDACFDYLS+GGYCAGGPINLLSGLTPRPSILA+HFFLVAFHGV KY+WP P+ GG+ R Y+ML VAC+IIMPLL+VE STVLA+WPVR +G++FPYG+
Sbjct: 31 LARLAMLGSLAALWRA---HEQVSPASAHMSTSFALLDTPQVPMLGMVLVVSLTCLCLVYVRASKCAAWTTPDEPSTKTRLNEIKADRS-SPSFRSLPSGGGKEEDVATSNADRLFLSGGVGMQRVPPRLSPAAGQSIIIIGAGTAGAAAAVGLAERGFKVLLFERDMSLQDRIVGELLQPGGVRALERLGLDECAKEGIDSVHVDGYVVFTPPQHKKEGGEK--VQSILLKYPAYDPATLKELFGVIDP--SPSSPAADCPTLSLSPPRFSEKEGDKLVHGAGRAVTPPFPEGTKVTPAPNPPSSPCGHLSMPPSPSFPSAARQGPTSLHPQGRSFHNGRFVQRLRARALAEPNVTVVNGIVSRLLYAE----------PDSPTSRVIGVEYKIGTGRRVRNADGEEVEEKEVRRAMAPLTLVADGLWSSLRTHVDKAAKPTQLSSFVGLILSHPPMASPLPHPHCGHVVLADPSPVLLYQISSTETRVLVDIFGRMPSASTGDLAHYLSTHIQPQLPPVLQAPFAAAVARGEFKSMPNRSMPAANVDRDGVLMVGDALNMRHPLTGGGMTVALRDVEALCYLLETST-DLGNPAAMRVLKGRFARERKAWAATINVLANALHAVFSTPAGNPTRKDLRDACFDYLSVGGYCAGGPINLLSGLTPRPSILALHFFLVAFHGVRKYLWPVPSWGGLGRTYEMLQVACEIIMPLLSVEKSTVLAAWPVRALVGLIFPYGR 750
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00760.1 ID=NO01G00760.1|Name=NO01G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp
ATGGAGGCAAGCACGCCTACACAGGGCCAAGTGCCACACCGTCCATCATT
ATCATCAGAACCAACACCACCAGGATCTCCTAATAGTAGCGTGGGTGTCG
GCGGCTCCATCGTCGTCGCCTCCTCTTTGTTGTTGGTCTCCAGCCTCACC
CTCTGGCAGGCCTGGCACCAGCACCAGCAGACACCTTTGGCCACGACCGG
CAATGCCGTAAACACAGCCAAGCTCCTCCTTCCTGTCCTCGGTGTGCTTG
CATCGCTTTCTTTCCTCTGTTATACCTCTCTCTTCTCCTCTGCCCAGTCT
CAAAGCAGCTGTGACGAACCCGACACCAAAATTACTCTTGGGCAGAAAAG
CACCGACTCCTCCTTCTCCCCCTCCACCACCACCACCTCTTCTCAACTTC
CCTCCTCCTCTATCTCCAACGCCGAGATGCTCTTCCGCTCCGGTGGGGTG
GGGGGCAATCGCATTCCTCCCCGCCAAGCCCCTTCAGCCGGACAGACTAT
CATTGTGGTTGGAGCAGGTACCGCAGGAGCAGCCGCGGCCGTCGGGCTCG
CCGAACGAGGGTTCAAGGTGTTGTTGTTCGAGAGAGACATGACGCTGCAA
GACCGGATCGTAGGAGAATTGTTGCAGCCAGGGGGGGTGCGGGCGCTGGA
AAGACTGGGATTGGATGAATGCGCGAAGGAAGGCATTGACTCGGTGGGGG
TGGAGGGGTATGTGGTTTTTCGTCCTCACAAGCTGGAAGTGGAAGGAGGG
GAAGAGGAAGTTGTGAAGAACATTATGTTGAATTACCCGGCATACGACCC
TGCGTCAATGAAGGAGCTGTTTGGCGTGATCGATCCCTGCGTCAGCCCCT
CGTCCTCGTCCTCGTCCTCATCTTCGTCCTTGTTCTCCATCCCTCCTTCC
ACGGAAGAGGTCCATGGGGCCGGCAAGACGCTCTCCCCCCACTCAATAAC
TAAAGCCCGAAAAACCGCAGGAGCAGTAGCCACAGCAGCAACAACAGTCG
CACAAGAGCATGAGCCGTTACGGCCCAAAGGCCGCAGTTTTCACAACGGT
CGATTCGTCCAACGGTTGCGCGAGCGGGCGCTGGCGGAGAAAAATGTCAC
CGTCATCCAGGGAATTGTCAGTCGGCTCGTCCACGAAGAGGACTTGACGG
AGGGAGCGAAGGAGGGAAGGGAGAAGGGAAAGAAGCAACGCGTCGTGGGA
GTGGAATACAAGATCGAAACGGGTCGAACCCTCACCAACGAAGAGGGGGT
GGAAGTACCTGAAAAAGAGACCCGGAGGGCCCTGGCCCCCCTCACCATCG
TCGCCGACGGCCTCTGGTCCTCTCTCCGGACCCACGTCGATAAATGCGCG
AAGCCTCACCAGCTTTCCTCCTTTGTTGGCCTGATAATCACCCACCCATT
CATGTCCTCCCCCCTCCCCCACGCCCATTGCGGCCACGTCGTCCTAGCCG
AGCCTTCCCCAGTCCTGCTCTACCAAATCTCCTCCACTGAGACCCGAGTC
CTCGTCGACATCCACGGCAAGCTGCCCTCCGCCTCGACTGGAGAGCTGGC
CTCCCACCTCTACACCCACATCCTCCCCCAACTCCCTCCCTGTCTCCAAG
CTCCTTTCGCCGAGGCCGTCGCCCGCGGGAACTTCAAGTCCATGCCGAAC
CGTGCCATGCCTGCTGCGAAGCTGGCCAAGGATGGCGTCATTCTCCTCGG
GGATGCGCTGAACATGCGACACCCGCTCACAGGGGGTGGGATGACGGTGG
CCCTCCGTGACGTCGAGGCATTGTGTTATTTGTTGGAAGAACCAACCGCG
GACCTTACCAACCCCGTCGCTTTCCGCGCGCTCAAAAAGCGCTTTGCCAC
GGAACGAAAATCGTGGGCTGCCACGATCAATGTGCTGGCCAATGCCCTGC
ACGCGGTCTTCTCCACCCCAGATGGAGACCTGACCCGGAAGGATCTAAGA
GACGCGTGTTTTGATTACCTTTCCATTGGCGGCTATTGCGCCGGCGGTCC
TATTAACTTGCTCTCGGGCCTAACGCCTCGTCCGTCCATCTTGGCGATGC
ATTTCTTCCTGGTGGCGTTTCACGGGGTGGGGAAGTACGTCTGGCCGTTT
CCTACCCTCGGGGGTATGGTCCGCATGTACGACATGCTGCATGTCGCGTG
TCAGATTATCATGCCTTTGCTGACGGTGGAGGGATCGACGGTGCTGGCCT
CGTGGCCAGTGCGGACGGCGATTGGGGTGGTGTTCCCCTATGGGAAGTGA back to topprotein sequence of NO01G00760.1 >NO01G00760.1-protein ID=NO01G00760.1-protein|Name=NO01G00760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=750bp
MEASTPTQGQVPHRPSLSSEPTPPGSPNSSVGVGGSIVVASSLLLVSSLT
LWQAWHQHQQTPLATTGNAVNTAKLLLPVLGVLASLSFLCYTSLFSSAQS
QSSCDEPDTKITLGQKSTDSSFSPSTTTTSSQLPSSSISNAEMLFRSGGV
GGNRIPPRQAPSAGQTIIVVGAGTAGAAAAVGLAERGFKVLLFERDMTLQ
DRIVGELLQPGGVRALERLGLDECAKEGIDSVGVEGYVVFRPHKLEVEGG
EEEVVKNIMLNYPAYDPASMKELFGVIDPCVSPSSSSSSSSSSLFSIPPS
TEEVHGAGKTLSPHSITKARKTAGAVATAATTVAQEHEPLRPKGRSFHNG
RFVQRLRERALAEKNVTVIQGIVSRLVHEEDLTEGAKEGREKGKKQRVVG
VEYKIETGRTLTNEEGVEVPEKETRRALAPLTIVADGLWSSLRTHVDKCA
KPHQLSSFVGLIITHPFMSSPLPHAHCGHVVLAEPSPVLLYQISSTETRV
LVDIHGKLPSASTGELASHLYTHILPQLPPCLQAPFAEAVARGNFKSMPN
RAMPAAKLAKDGVILLGDALNMRHPLTGGGMTVALRDVEALCYLLEEPTA
DLTNPVAFRALKKRFATERKSWAATINVLANALHAVFSTPDGDLTRKDLR
DACFDYLSIGGYCAGGPINLLSGLTPRPSILAMHFFLVAFHGVGKYVWPF
PTLGGMVRMYDMLHVACQIIMPLLTVEGSTVLASWPVRTAIGVVFPYGK* back to topmRNA from alignment at chr1:193240..195645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00760.1 ID=NO01G00760.1|Name=NO01G00760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2406bp|location=Sequence derived from alignment at chr1:193240..195645- (Nannochloropsis oceanica)
ATGGAGGCAAGCACGCCTACACAGGGCCAAGTGCCACACCGTCCATCATT
ATCATCAGAACCAACACCACCAGGATCTCCTAATAGTAGCGTGGGTGTCG
GCGGCTCCATCGTCGTCGCCTCCTCTTTGTTGTTGGTCTCCAGCCTCACC
CTCTGGCAGGCCTGGCACCAGCACCAGCAGACACCTTTGGCCACGACCGG
CAATGCCGTAAACACAGCCAAGGTTCGTACATACATGTCCTTCCCTCTGC
TGTTTATCGTCAAAACTGCAATCTGGGTCCATTCACGGGTCATGCTTCTC
TGCCTGCCCCCCCCCCTTCTAATTCCCTCTCTCCCTTTCTCCATGCATCC
ATCCATCCCTCCATCCATCACCCCGCAGCTCCTCCTTCCTGTCCTCGGTG
TGCTTGCATCGCTTTCTTTCCTCTGTTATACCTCTCTCTTCTCCTCTGCC
CAGTCTCAAAGCAGCTGTGACGAACCCGACACCAAAATTACTCTTGGGCA
GAAAAGCACCGACTCCTCCTTCTCCCCCTCCACCACCACCACCTCTTCTC
AACTTCCCTCCTCCTCTATCTCCAACGCCGAGATGCTCTTCCGCTCCGGT
GGGGTGGGGGGCAATCGCATTCCTCCCCGCCAAGCCCCTTCAGCCGGACA
GACTATCATTGTGGTTGGAGCAGGTACCGCAGGAGCAGCCGCGGCCGTCG
GGCTCGCCGAACGAGGGTTCAAGGTGTTGTTGTTCGAGAGAGACATGACG
CTGCAAGACCGGATCGTAGGAGAATTGTTGCAGCCAGGGGGGGTGCGGGC
GCTGGAAAGACTGGGATTGGATGAATGCGCGAAGGAAGGCATTGACTCGG
TGGGGGTGGAGGGGTATGTGGTTTTTCGTCCTCACAAGCTGGAAGTGGAA
GGAGGGGAAGAGGAAGTTGTGAAGAACATTATGTTGAATTACCCGGCATA
CGACCCTGCGTCAATGAAGGAGCTGTTTGGCGTGATCGATCCCTGCGTCA
GCCCCTCGTCCTCGTCCTCGTCCTCATCTTCGTCCTTGTTCTCCATCCCT
CCTTCCACGGAAGAGGTCCATGGGGCCGGCAAGACGCTCTCCCCCCACTC
AATAACTAAAGCCCGAAAAACCGCAGGAGCAGTAGCCACAGCAGCAACAA
CAGTCGCACAAGAGCATGAGCCGTTACGGCCCAAAGGCCGCAGTTTTCAC
AACGGTCGATTCGTCCAACGGTTGCGCGAGCGGGCGCTGGCGGAGAAAAA
TGTCACCGTCATCCAGGGAATTGTCAGTCGGCTCGTCCACGAAGAGGACT
TGACGGAGGGAGCGAAGGAGGGAAGGGAGAAGGGAAAGAAGCAACGCGTC
GTGGGAGTGGAATACAAGATCGAAACGGGTCGAACCCTCACCAACGAAGA
GGGGGTGGAAGTACCTGAAAAAGAGACCCGGAGGGCCCTGGCCCCCCTCA
CCATCGTCGCCGACGGCCTCTGGTCCTCTCTCCGGACCCACGTCGATAAA
TGCGCGAAGCCTCACCAGCTTTCCTCCTTTGTTGGCCTGATAATCACCCA
CCCATTCATGTCCTCCCCCCTCCCCCACGCCCATTGCGGCCACGTCGTCC
TAGCCGAGCCTTCCCCAGTCCTGCTCTACCAAATCTCCTCCACTGAGACC
CGAGTCCTCGTCGACATCCACGGCAAGCTGCCCTCCGCCTCGACTGGAGA
GCTGGCCTCCCACCTCTACACCCACATCCTCCCCCAACTCCCTCCCTGTC
TCCAAGCTCCTTTCGCCGAGGCCGTCGCCCGCGGGAACTTCAAGTCCATG
CCGAACCGTGCCATGCCTGCTGCGAAGCTGGCCAAGGATGGCGTCATTCT
CCTCGGGGATGCGCTGAACATGCGACACCCGCTCACAGGGGGTGGGATGA
CGGTGGCCCTCCGTGACGTCGAGGCATTGTGTTATTTGTTGGAAGAACCA
ACCGCGGACCTTACCAACCCCGTCGCTTTCCGCGCGCTCAAAAAGCGCTT
TGCCACGGAACGAAAATCGTGGGCTGCCACGATCAATGTGCTGGCCAATG
CCCTGCACGCGGTCTTCTCCACCCCAGATGGAGACCTGACCCGGAAGGAT
CTAAGAGACGCGTGTTTTGATTACCTTTCCATTGGCGGCTATTGCGCCGG
CGGTCCTATTAACTTGCTCTCGGGCCTAACGCCTCGTCCGTCCATCTTGG
CGATGCATTTCTTCCTGGTGGCGTTTCACGGGGTGGGGAAGTACGTCTGG
CCGTTTCCTACCCTCGGGGGTATGGTCCGCATGTACGACATGCTGCATGT
CGCGTGTCAGATTATCATGCCTTTGCTGACGGTGGAGGGATCGACGGTGC
TGGCCTCGTGGCCAGTGCGGACGGCGATTGGGGTGGTGTTCCCCTATGGG
AAGTGA back to topCoding sequence (CDS) from alignment at chr1:193240..195645- >NO01G00760.1 ID=NO01G00760.1|Name=NO01G00760.1|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at chr1:193240..195645- (Nannochloropsis oceanica)
ATGGAGGCAAGCACGCCTACACAGGGCCAAGTGCCACACCGTCCATCATT
ATCATCAGAACCAACACCACCAGGATCTCCTAATAGTAGCGTGGGTGTCG
GCGGCTCCATCGTCGTCGCCTCCTCTTTGTTGTTGGTCTCCAGCCTCACC
CTCTGGCAGGCCTGGCACCAGCACCAGCAGACACCTTTGGCCACGACCGG
CAATGCCGTAAACACAGCCAAGCTCCTCCTTCCTGTCCTCGGTGTGCTTG
CATCGCTTTCTTTCCTCTGTTATACCTCTCTCTTCTCCTCTGCCCAGTCT
CAAAGCAGCTGTGACGAACCCGACACCAAAATTACTCTTGGGCAGAAAAG
CACCGACTCCTCCTTCTCCCCCTCCACCACCACCACCTCTTCTCAACTTC
CCTCCTCCTCTATCTCCAACGCCGAGATGCTCTTCCGCTCCGGTGGGGTG
GGGGGCAATCGCATTCCTCCCCGCCAAGCCCCTTCAGCCGGACAGACTAT
CATTGTGGTTGGAGCAGGTACCGCAGGAGCAGCCGCGGCCGTCGGGCTCG
CCGAACGAGGGTTCAAGGTGTTGTTGTTCGAGAGAGACATGACGCTGCAA
GACCGGATCGTAGGAGAATTGTTGCAGCCAGGGGGGGTGCGGGCGCTGGA
AAGACTGGGATTGGATGAATGCGCGAAGGAAGGCATTGACTCGGTGGGGG
TGGAGGGGTATGTGGTTTTTCGTCCTCACAAGCTGGAAGTGGAAGGAGGG
GAAGAGGAAGTTGTGAAGAACATTATGTTGAATTACCCGGCATACGACCC
TGCGTCAATGAAGGAGCTGTTTGGCGTGATCGATCCCTGCGTCAGCCCCT
CGTCCTCGTCCTCGTCCTCATCTTCGTCCTTGTTCTCCATCCCTCCTTCC
ACGGAAGAGGTCCATGGGGCCGGCAAGACGCTCTCCCCCCACTCAATAAC
TAAAGCCCGAAAAACCGCAGGAGCAGTAGCCACAGCAGCAACAACAGTCG
CACAAGAGCATGAGCCGTTACGGCCCAAAGGCCGCAGTTTTCACAACGGT
CGATTCGTCCAACGGTTGCGCGAGCGGGCGCTGGCGGAGAAAAATGTCAC
CGTCATCCAGGGAATTGTCAGTCGGCTCGTCCACGAAGAGGACTTGACGG
AGGGAGCGAAGGAGGGAAGGGAGAAGGGAAAGAAGCAACGCGTCGTGGGA
GTGGAATACAAGATCGAAACGGGTCGAACCCTCACCAACGAAGAGGGGGT
GGAAGTACCTGAAAAAGAGACCCGGAGGGCCCTGGCCCCCCTCACCATCG
TCGCCGACGGCCTCTGGTCCTCTCTCCGGACCCACGTCGATAAATGCGCG
AAGCCTCACCAGCTTTCCTCCTTTGTTGGCCTGATAATCACCCACCCATT
CATGTCCTCCCCCCTCCCCCACGCCCATTGCGGCCACGTCGTCCTAGCCG
AGCCTTCCCCAGTCCTGCTCTACCAAATCTCCTCCACTGAGACCCGAGTC
CTCGTCGACATCCACGGCAAGCTGCCCTCCGCCTCGACTGGAGAGCTGGC
CTCCCACCTCTACACCCACATCCTCCCCCAACTCCCTCCCTGTCTCCAAG
CTCCTTTCGCCGAGGCCGTCGCCCGCGGGAACTTCAAGTCCATGCCGAAC
CGTGCCATGCCTGCTGCGAAGCTGGCCAAGGATGGCGTCATTCTCCTCGG
GGATGCGCTGAACATGCGACACCCGCTCACAGGGGGTGGGATGACGGTGG
CCCTCCGTGACGTCGAGGCATTGTGTTATTTGTTGGAAGAACCAACCGCG
GACCTTACCAACCCCGTCGCTTTCCGCGCGCTCAAAAAGCGCTTTGCCAC
GGAACGAAAATCGTGGGCTGCCACGATCAATGTGCTGGCCAATGCCCTGC
ACGCGGTCTTCTCCACCCCAGATGGAGACCTGACCCGGAAGGATCTAAGA
GACGCGTGTTTTGATTACCTTTCCATTGGCGGCTATTGCGCCGGCGGTCC
TATTAACTTGCTCTCGGGCCTAACGCCTCGTCCGTCCATCTTGGCGATGC
ATTTCTTCCTGGTGGCGTTTCACGGGGTGGGGAAGTACGTCTGGCCGTTT
CCTACCCTCGGGGGTATGGTCCGCATGTACGACATGCTGCATGTCGCGTG
TCAGATTATCATGCCTTTGCTGACGGTGGAGGGATCGACGGTGCTGGCCT
CGTGGCCAGTGCGGACGGCGATTGGGGTGGTGTTCCCCTATGGGAAGTGA back to top
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