NO01G00740.1, NO01G00740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00740.1
Unique NameNO01G00740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length378
Alignment locationchr1:189009..189615 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:189009..189615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G00740.1 vs.
Match: EWM29006.1 (Uncharacterized protein Naga_100851g2 [Nannochloropsis gaditana])

HSP 1 Score: 200.7 bits (509), Expect = 2.700e-48
Identity = 95/124 (76.61%), Postives = 110/124 (88.71%), Query Frame = 0
Query:    1 MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSFPCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALICPETGRRFSIVGGVVDMMMKDEEV 125
            MRLLSHNVLRNTAKGVV+G+PLKIEA QI+VRDTEPDL F+RHLLPT+SFP LRSAA+DLGLD AAFP S +  L +DE FL+ALHK LFDVHVLEG+L+CPE+GRRFSI GG+ DMM+ DEE+
Sbjct:    1 MRLLSHNVLRNTAKGVVDGYPLKIEAAQIDVRDTEPDLTFIRHLLPTISFPVLRSAAEDLGLDAAAFPASYSTTLGEDEAFLRALHKALFDVHVLEGSLVCPESGRRFSIRGGIPDMMLTDEEL 124          
The following BLAST results are available for this feature:
BLAST of NO01G00740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29006.12.700e-4876.61Uncharacterized protein Naga_100851g2 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00740NO01G00740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00740.1NO01G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00740.1.cds1NO01G00740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00740.1.cds2NO01G00740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00740.1 ID=NO01G00740.1|Name=NO01G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=378bp
ATGCGCCTCCTCAGCCACAATGTCCTGCGCAACACGGCCAAGGGTGTGGT
GGAAGGTTTCCCACTCAAAATCGAGGCCCAGCAAATAGAAGTACGAGACA
CCGAGCCCGATCTGCCCTTCATGCGTCACCTCCTCCCCACCCTCTCCTTC
CCCTGTCTTCGCTCCGCCGCCAAAGATTTGGGATTAGACGTCGCTGCGTT
TCCTGAATCACTTACTGAGGCCTTGGCACAGGATGAGGAGTTCTTGAAGG
CATTGCACAAGACGCTGTTTGACGTGCATGTGCTGGAAGGGGCGCTGATC
TGTCCGGAGACGGGAAGGCGATTTTCCATCGTCGGGGGTGTTGTCGATAT
GATGATGAAGGACGAGGAGGTGGTTTGA
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protein sequence of NO01G00740.1

>NO01G00740.1-protein ID=NO01G00740.1-protein|Name=NO01G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSF
PCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALI
CPETGRRFSIVGGVVDMMMKDEEVV*
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mRNA from alignment at chr1:189009..189615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00740.1 ID=NO01G00740.1|Name=NO01G00740.1|organism=Nannochloropsis oceanica|type=mRNA|length=607bp|location=Sequence derived from alignment at chr1:189009..189615+ (Nannochloropsis oceanica)
ATGCGCCTCCTCAGCCACAATGTCCTGCGCAACACGGCCAAGGGTGTGGT GGAAGGTTTCCCACTCAAAATCGAGGCCCAGCAAATAGAAGTACGTATGG TGGCCGCTCTGCTCCCTATCGACCTTCCAACCCGACTCTCTTCCACCAAG CCCCCCCGCTTTTCCTTCCTCTCGGACAGCACGGCCGTCCAGCCATCGTA TCTTTTATTGTCTTTCAATCCATGCCTCCCGCGCGATTGTTTACAACAGC TATTCATAGGACCCGCTTCATTCCTATTCCAATCATCCATCTTCCCCATC CCACCCTAAACCCAACCAGGTACGAGACACCGAGCCCGATCTGCCCTTCA TGCGTCACCTCCTCCCCACCCTCTCCTTCCCCTGTCTTCGCTCCGCCGCC AAAGATTTGGGATTAGACGTCGCTGCGTTTCCTGAATCACTTACTGAGGC CTTGGCACAGGATGAGGAGTTCTTGAAGGCATTGCACAAGACGCTGTTTG ACGTGCATGTGCTGGAAGGGGCGCTGATCTGTCCGGAGACGGGAAGGCGA TTTTCCATCGTCGGGGGTGTTGTCGATATGATGATGAAGGACGAGGAGGT GGTTTGA
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Coding sequence (CDS) from alignment at chr1:189009..189615+

>NO01G00740.1 ID=NO01G00740.1|Name=NO01G00740.1|organism=Nannochloropsis oceanica|type=CDS|length=378bp|location=Sequence derived from alignment at chr1:189009..189615+ (Nannochloropsis oceanica)
ATGCGCCTCCTCAGCCACAATGTCCTGCGCAACACGGCCAAGGGTGTGGT
GGAAGGTTTCCCACTCAAAATCGAGGCCCAGCAAATAGAAGTACGAGACA
CCGAGCCCGATCTGCCCTTCATGCGTCACCTCCTCCCCACCCTCTCCTTC
CCCTGTCTTCGCTCCGCCGCCAAAGATTTGGGATTAGACGTCGCTGCGTT
TCCTGAATCACTTACTGAGGCCTTGGCACAGGATGAGGAGTTCTTGAAGG
CATTGCACAAGACGCTGTTTGACGTGCATGTGCTGGAAGGGGCGCTGATC
TGTCCGGAGACGGGAAGGCGATTTTCCATCGTCGGGGGTGTTGTCGATAT
GATGATGAAGGACGAGGAGGTGGTTTGA
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Synonyms
Publications