NO01G00650.1, NO01G00650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00650.1
Unique NameNO01G00650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1467
Alignment locationchr1:168098..170097 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:168098..170097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00650.1 vs.
Match: XP_008875030.1 (hypothetical protein H310_10422 [Aphanomyces invadans]; ETV96238.1 hypothetical protein H310_10422 [Aphanomyces invadans])

HSP 1 Score: 147.9 bits (372), Expect = 8.200e-32
Identity = 83/219 (37.90%), Postives = 115/219 (52.51%), Query Frame = 0 
Query:  270 DWCKQCGMKKPLRAHHCTHCNRCVHTFDHHCHFLATCVGERNHCRFLLFLMAQNTACYSALQVVGTGFARRGSPDLVDYVLANLLPLSLSLLLWCLYGIAFLLLVLHIFLAVSSLTSYEFTKGPERIVYLRRHGGEEEGGGGGRGEGGDGDVFDLPFSEGLCMNVVSFCCVRDGIWSSLMGKEWRPAVWAKKEEEEEEGGERSRDVCRYPYRNVYWSCC 489
            ++C  C ++ PLRA+HC  CNRCV TFDHHC F+ +CVGE+NHCRF  FL+  +   YS L VV +GF    +  L  ++  N + L   L  +     A+ L   H FL +++ T+ E  KGP+ + YLR   G  E               DLPFS GL  N+  FCC+R G  + L  + W PA W    + E      S ++C   + N Y+SCC
Sbjct:   55 EFCTVCQLQPPLRAYHCAFCNRCVATFDHHCFFIGSCVGEKNHCRFWWFLLLTSLEVYSCLGVVHSGF--HSATSLQGWLQLNSIALVAVLFFYTFAATAYSLCGFHTFLMLTNSTTRELGKGPDNLAYLR---GTRE--------------CDLPFSNGLVRNLGGFCCLRAGCPTILRRQPWSPAAWKPVGKIE----RNSANICDNLWENQYYSCC 250
The following BLAST results are available for this feature:
BLAST of NO01G00650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008875030.18.200e-3237.90hypothetical protein H310_10422 [Aphanomyces invad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00650NO01G00650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00650.1NO01G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00650.1.cds1NO01G00650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00650.1.cds2NO01G00650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00650.1.cds3NO01G00650.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00650.1.cds4NO01G00650.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00650.1.cds5NO01G00650.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00650.1 ID=NO01G00650.1|Name=NO01G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1467bp
ATGGCGTGCAAAACCGTGAGGGGCACTGAATTGCGACGCGTCAACGACGA
CGATAAGAAGAAGGGAAAGCTAGAGGAGGAGCACGATTCGCTTGTGGAGG
TAATGTCGGCAGAAGCAGAACAAAATGGCATACCTTGGCCTCGACAAAAA
CCCAAGCCTCTGCCGCGCTCCCGAACGTCCCAACGACGCGAACGGAACAA
AGCGTGCGCTACCTACCTGGCATCAAATCTCGTCGTCACGGTGCTATTGG
CCCTGGTTCCGGACCGCACCTATTTACATGAACGAAAAGATTTGTGGGGC
TTTTTTGCCGTATCGGTCGGGACGACAGTCATTTTGTTTTTGGTGTTACA
GGCGAGTAGTCCGGGATACGTGGCTCGAGAGGAGGCATCGGAAGGGAGGG
AGGATGAGGACGGGAGATTGCGTTTGTTGGAGGGAGGAGAGATTGAAATG
TGGGAAGTTGGTCAGGAGAAGGGTAATAAAGAGGAGGAAGGAGATGATCA
AGTGTTGTTGCGGGGGCCTCGGTATTGGAGGCAGCGCAAACATAGACCCC
TGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAG
GAGAGGGAGGAGGAGGAGGGGGAGGAGGAAGAGGAGAAGGAGGAGAAGGA
GGGAGAGGAGCAGCAACAGGGAGAGCTCCAGCAGCTGCAGCAGCAGCAGC
ACCAAGGTGCAGTACCAACAGCTGATTCAAGTTATAGCGCCGATTGGAAC
CATCCCGATTTGAGGAGAGGTAGGAGGAGAGCAGGGCGGATGTCGACCAC
TCCAGACGACTGGTGCAAGCAGTGTGGGATGAAGAAGCCTTTGCGTGCTC
ACCACTGCACGCACTGCAACCGCTGTGTCCATACTTTCGACCACCACTGC
CACTTCCTCGCTACGTGCGTGGGAGAGCGGAACCATTGCCGTTTCCTTCT
CTTCCTCATGGCGCAGAACACGGCGTGTTACTCGGCTTTGCAAGTCGTCG
GGACGGGCTTCGCACGCAGAGGAAGCCCTGACTTGGTCGACTACGTCCTT
GCCAACCTCCTCCCCCTCTCCCTCTCCCTCCTCCTCTGGTGCTTGTACGG
CATAGCCTTCCTCCTTCTCGTCCTTCACATCTTCCTTGCTGTCTCCTCCC
TCACGTCCTACGAATTTACCAAAGGGCCTGAGAGAATTGTGTATCTACGA
AGACATGGAGGAGAGGAGGAGGGAGGAGGAGGAGGAAGGGGAGAGGGAGG
GGACGGTGATGTATTTGACCTTCCATTCAGTGAGGGCTTGTGCATGAATG
TTGTGTCCTTCTGTTGTGTGAGGGATGGGATATGGTCGAGCTTGATGGGG
AAGGAGTGGCGGCCTGCGGTGTGGGCGAAAAAAGAGGAGGAAGAGGAGGA
GGGGGGGGAAAGGTCTAGGGACGTGTGTCGCTATCCGTATCGGAACGTAT
ATTGGTCGTGTTGTTGA
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protein sequence of NO01G00650.1

>NO01G00650.1-protein ID=NO01G00650.1-protein|Name=NO01G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MACKTVRGTELRRVNDDDKKKGKLEEEHDSLVEVMSAEAEQNGIPWPRQK
PKPLPRSRTSQRRERNKACATYLASNLVVTVLLALVPDRTYLHERKDLWG
FFAVSVGTTVILFLVLQASSPGYVAREEASEGREDEDGRLRLLEGGEIEM
WEVGQEKGNKEEEGDDQVLLRGPRYWRQRKHRPLQQQQQQQQQQQQQQEE
EREEEEGEEEEEKEEKEGEEQQQGELQQLQQQQHQGAVPTADSSYSADWN
HPDLRRGRRRAGRMSTTPDDWCKQCGMKKPLRAHHCTHCNRCVHTFDHHC
HFLATCVGERNHCRFLLFLMAQNTACYSALQVVGTGFARRGSPDLVDYVL
ANLLPLSLSLLLWCLYGIAFLLLVLHIFLAVSSLTSYEFTKGPERIVYLR
RHGGEEEGGGGGRGEGGDGDVFDLPFSEGLCMNVVSFCCVRDGIWSSLMG
KEWRPAVWAKKEEEEEEGGERSRDVCRYPYRNVYWSCC*
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mRNA from alignment at chr1:168098..170097+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00650.1 ID=NO01G00650.1|Name=NO01G00650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2000bp|location=Sequence derived from alignment at chr1:168098..170097+ (Nannochloropsis oceanica)
ATGGCGTGCAAAACCGTGAGGTCAGGCACGGTCGAGATGAATTGGACACA
TCAACTCGATCGCCGAGTCGTCCCAATTCTTCAAACCATTTTCGTGACCC
CACTATCCACCATCACCCACACACATAACATTCAAGCAGGGGCACTGAAT
TGCGACGCGTCAACGACGACGATAAGAAGAAGGGAAAGCTAGAGGAGGAG
CACGATTCGCTTGTGGAGGTAATGTCGGCAGAAGCAGAACAAAATGGCAT
ACCTTGGCCTCGACAAAAACCCAAGCCTCTGCCGCGCTCCCGAACGTCCC
AACGACGCGAAGTAAGTAAATTGAGATTAGGCAAAGGAAAGATGCGGTCT
TATTATTATTTTTAATCTTTATAAAGAGGCAGTGCCAAAGAAGCCGTTCA
CCGACCCACCCTCACACCCTCCATCCCTCCCCATTGCCACACAAAAGCGG
AACAAAGCGTGCGCTACCTACCTGGCATCAAATCTCGTCGTCACGGTGCT
ATTGGCCCTGGTTCCGGACCGCACCTATTTACATGAACGAAAAGATTTGT
GGGGCTTTTTTGCCGTATCGGTCGGGACGACAGTCATTTTGTTTTTGGTG
TTACAGGCGAGTAGTCCGGGATACGTGGCTCGAGAGGAGGCATCGGAAGG
GAGGGAGGATGAGGACGGGAGATTGCGTTTGTTGGAGGGAGGAGAGATTG
AAATGTGGGAAGTTGGTCAGGAGAAGGGTAATAAAGAGGAGGAAGGAGAT
GATCAAGTGTTGTTGCGGGGGCCTCGGTATTGGAGGCAGCGCAAACATAG
ACCCCTGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGG
AGGAGGAGAGGGAGGAGGAGGAGGGGGAGGAGGAAGAGGAGAAGGAGGAG
AAGGAGGGAGAGGAGCAGCAACAGGGAGAGCTCCAGCAGCTGCAGCAGCA
GCAGCACCAAGGTGCAGTACCAACAGCTGATTCAAGTTATAGCGCCGATT
GGAACCATCCCGATTTGAGGAGAGGTAGGAGGAGAGCAGGGCGGATGTCG
ACCACTCCAGACGACTGGTGCAAGCAGTGTGGGATGAAGAAGGTAGTTGA
TGAATGTGGAAAGGAGGGAGCGAGGGTTGAGGGTACAACAACACACAACA
ACAAGAGGAATGCTACTTCTGTTATTATTTACTTCATACCTCCCTCTGTC
TCTCCTCTTCCTCATCTATACCAGCCTTTGCGTGCTCACCACTGCACGCA
CTGCAACCGCTGTGTCCATACTTTCGACCACCACTGCCACTTCCTCGCTA
CGTGCGTGGGAGAGCGGAACCATTGCCGTTTCCTTCTCTTCCTCATGGCG
CAGAACACGGCGTGTTACTCGGCTTTGCAAGTCGTCGGGACGGGCTTCGC
ACGCAGGTACAGGGAGAGGGCGGGCAGGCGGGCGGGCGGGCGGGCGGGAG
GGAGGGAGGGAAACGTTGGGAACCTCCCTTAATGGACGCGATGGGAGCCG
ATTCATCTCATTTCTCCCCTCTCTCTCTTTCCCCCCTTCCCTCCCCTCCT
AGAGGAAGCCCTGACTTGGTCGACTACGTCCTTGCCAACCTCCTCCCCCT
CTCCCTCTCCCTCCTCCTCTGGTGCTTGTACGGCATAGCCTTCCTCCTTC
TCGTCCTTCACATCTTCCTTGCTGTCTCCTCCCTCACGTCCTACGAATTT
ACCAAAGGGCCTGAGAGAATTGTGTATCTACGAAGACATGGAGGAGAGGA
GGAGGGAGGAGGAGGAGGAAGGGGAGAGGGAGGGGACGGTGATGTATTTG
ACCTTCCATTCAGTGAGGGCTTGTGCATGAATGTTGTGTCCTTCTGTTGT
GTGAGGGATGGGATATGGTCGAGCTTGATGGGGAAGGAGTGGCGGCCTGC
GGTGTGGGCGAAAAAAGAGGAGGAAGAGGAGGAGGGGGGGGAAAGGTCTA
GGGACGTGTGTCGCTATCCGTATCGGAACGTATATTGGTCGTGTTGTTGA
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Coding sequence (CDS) from alignment at chr1:168098..170097+

>NO01G00650.1 ID=NO01G00650.1|Name=NO01G00650.1|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at chr1:168098..170097+ (Nannochloropsis oceanica)
ATGGCGTGCAAAACCGTGAGGGGCACTGAATTGCGACGCGTCAACGACGA
CGATAAGAAGAAGGGAAAGCTAGAGGAGGAGCACGATTCGCTTGTGGAGG
TAATGTCGGCAGAAGCAGAACAAAATGGCATACCTTGGCCTCGACAAAAA
CCCAAGCCTCTGCCGCGCTCCCGAACGTCCCAACGACGCGAACGGAACAA
AGCGTGCGCTACCTACCTGGCATCAAATCTCGTCGTCACGGTGCTATTGG
CCCTGGTTCCGGACCGCACCTATTTACATGAACGAAAAGATTTGTGGGGC
TTTTTTGCCGTATCGGTCGGGACGACAGTCATTTTGTTTTTGGTGTTACA
GGCGAGTAGTCCGGGATACGTGGCTCGAGAGGAGGCATCGGAAGGGAGGG
AGGATGAGGACGGGAGATTGCGTTTGTTGGAGGGAGGAGAGATTGAAATG
TGGGAAGTTGGTCAGGAGAAGGGTAATAAAGAGGAGGAAGGAGATGATCA
AGTGTTGTTGCGGGGGCCTCGGTATTGGAGGCAGCGCAAACATAGACCCC
TGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAG
GAGAGGGAGGAGGAGGAGGGGGAGGAGGAAGAGGAGAAGGAGGAGAAGGA
GGGAGAGGAGCAGCAACAGGGAGAGCTCCAGCAGCTGCAGCAGCAGCAGC
ACCAAGGTGCAGTACCAACAGCTGATTCAAGTTATAGCGCCGATTGGAAC
CATCCCGATTTGAGGAGAGGTAGGAGGAGAGCAGGGCGGATGTCGACCAC
TCCAGACGACTGGTGCAAGCAGTGTGGGATGAAGAAGCCTTTGCGTGCTC
ACCACTGCACGCACTGCAACCGCTGTGTCCATACTTTCGACCACCACTGC
CACTTCCTCGCTACGTGCGTGGGAGAGCGGAACCATTGCCGTTTCCTTCT
CTTCCTCATGGCGCAGAACACGGCGTGTTACTCGGCTTTGCAAGTCGTCG
GGACGGGCTTCGCACGCAGAGGAAGCCCTGACTTGGTCGACTACGTCCTT
GCCAACCTCCTCCCCCTCTCCCTCTCCCTCCTCCTCTGGTGCTTGTACGG
CATAGCCTTCCTCCTTCTCGTCCTTCACATCTTCCTTGCTGTCTCCTCCC
TCACGTCCTACGAATTTACCAAAGGGCCTGAGAGAATTGTGTATCTACGA
AGACATGGAGGAGAGGAGGAGGGAGGAGGAGGAGGAAGGGGAGAGGGAGG
GGACGGTGATGTATTTGACCTTCCATTCAGTGAGGGCTTGTGCATGAATG
TTGTGTCCTTCTGTTGTGTGAGGGATGGGATATGGTCGAGCTTGATGGGG
AAGGAGTGGCGGCCTGCGGTGTGGGCGAAAAAAGAGGAGGAAGAGGAGGA
GGGGGGGGAAAGGTCTAGGGACGTGTGTCGCTATCCGTATCGGAACGTAT
ATTGGTCGTGTTGTTGA
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Synonyms
Publications