NO01G00620.1, NO01G00620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00620.1
Unique NameNO01G00620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1869
Alignment locationchr1:163175..165043 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:163175..165043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G00620.1 vs.
Match: EWM28986.1 (hypothetical protein Naga_100501g3 [Nannochloropsis gaditana])

HSP 1 Score: 293.5 bits (750), Expect = 1.500e-75
Identity = 174/377 (46.15%), Postives = 232/377 (61.54%), Query Frame = 0
Query:    6 NSIVFLALGSLGDLLPLLAIARRIAQQDHDQLD--------------VVVVTHAQYLSRLHALLHQSSNPLSPLRLV-LRGIPTPPLPLPNAGPSHVQHELDACLAACRIHTPIALLAFNLVAKFGIHLAELLSIPSYVLLHPSLAPPSPEPSLAYVRSMLGANLFKMMLRVEESEERFKEMTHWMLSLFLPVYHTFRERHGLCPCISSPSFQPSSSSSSSSSSLSLTARLALTGGTPLLYGVSEFFFPKPGYWPKAAVFCGAWRW-EEEDVR-----EGKEEWKEKWMPSEALQRFVEGEEGKEDTEATTCALARKGGEGEGKEGAMALPVLPASLPRPPLICLDMGSCVEVGLRTRSEWEGLIEGVVEALRRAFP 362
            ++++FLALGSLGD+LP+LA+A R  ++    LD              +V +TH  YL RL  LL ++   LS   ++ + GI +PPLPL  AGP  V  EL+ CLAA R H PIALLA NLVA+FG+H+ E+L   S  +L PSL PP+P PS   +R++LG    +++   +   +R + M + MLSLFLP YH FRERHGL PC+SSPS  P+  ++S +      A  AL G  P LYGVSE FFPKPGYWP+++VFCGAW W +EE+V      EG +E  E W+P E L+RFVEGE      ++ T    R+   G+GK   + +    A    PPLICLDMGS +E  L  R EWE L+E V+ AL++ FP
Sbjct:   11 HTVIFLALGSLGDVLPVLAVAHRFGRR----LDRRGPCPSRRKHLPALVFITHTLYLPRLKTLLERALPRLSQAPVLHIEGIDSPPLPLRRAGPVSVPDELEQCLAASRGHAPIALLACNLVARFGVHIGEILGAASSAVLAPSLPPPTPSPSPTLLRNLLGPKFLRLL--EDTGTDRLRYMEYGMLSLFLPAYHAFRERHGLSPCLSSPSAPPAPRTASQA------ALYALRGNLPFLYGVSEGFFPKPGYWPESSVFCGAWTWAQEEEVGREGGWEGGQEDGEGWVPDEELRRFVEGEGWPPKKKSATEGNVRRVSGGDGK---VKVSARTAGSSLPPLICLDMGSMIETELMGREEWEALVEEVLVALKKVFP 372          
The following BLAST results are available for this feature:
BLAST of NO01G00620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28986.11.500e-7546.15hypothetical protein Naga_100501g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00620NO01G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00620.1NO01G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00620.1.cds1NO01G00620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00620.1 ID=NO01G00620.1|Name=NO01G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp
ATGGCGTCCACTTCAAACAGCATCGTCTTCCTTGCCCTTGGCTCCCTAGG
GGACCTCTTGCCGCTCCTTGCCATAGCCCGGCGTATCGCGCAGCAGGATC
ATGACCAGCTCGATGTGGTCGTCGTCACCCACGCTCAATACCTGTCCCGT
CTCCATGCGCTCCTCCACCAATCTTCCAATCCTCTTTCCCCCCTCCGCCT
CGTCCTCCGAGGCATCCCCACACCGCCCTTACCCCTACCAAACGCCGGCC
CCTCCCACGTTCAACACGAACTCGACGCCTGCCTCGCCGCCTGTCGCATT
CACACCCCTATTGCCCTCCTCGCTTTTAATCTCGTCGCCAAGTTTGGCAT
TCACCTCGCCGAGCTCCTCTCTATCCCTTCCTACGTCCTCCTCCACCCCT
CCCTCGCCCCTCCCTCGCCCGAGCCCTCCCTCGCATATGTCAGGTCCATG
TTGGGCGCAAATTTATTCAAGATGATGCTAAGGGTAGAGGAAAGCGAAGA
GAGATTCAAGGAAATGACGCACTGGATGCTCAGCCTCTTCCTGCCTGTCT
ATCACACCTTTCGAGAGCGGCACGGCCTGTGTCCCTGCATCTCCTCGCCG
TCCTTCCAGCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCCTCTCACT
CACTGCTCGTCTAGCCCTGACGGGTGGCACGCCCCTCCTGTACGGTGTCA
GTGAATTCTTCTTCCCCAAACCCGGCTACTGGCCAAAGGCGGCCGTTTTC
TGTGGCGCCTGGAGGTGGGAGGAGGAGGACGTGAGGGAGGGGAAGGAGGA
ATGGAAGGAGAAATGGATGCCTTCGGAGGCTCTGCAGCGGTTTGTGGAAG
GCGAGGAAGGGAAGGAGGACACAGAGGCGACGACATGTGCGCTGGCACGT
AAAGGAGGAGAAGGAGAAGGAAAAGAGGGAGCAATGGCACTACCAGTGCT
TCCTGCCTCCCTTCCCCGTCCCCCATTGATCTGTCTGGACATGGGTTCGT
GCGTGGAGGTTGGACTTCGGACACGGAGTGAATGGGAGGGATTGATTGAG
GGTGTGGTGGAGGCGCTGCGACGCGCTTTCCCTGGAGGGGGAGGAGGAGG
AGGGAGAGAGGGAGGGAGGGGGGGAGGATCACCTGACAACCCTGAGAAAG
GGGAGAAGAGGACAGGATATGGCAGCGGGGGCTTTCGTTTGCTGTTGCTG
CACTTCCCTCCCTCCTCTTCACTGGGGGCGGAGGTGGCGTTGGAGAAAGA
CGAGGAATGGGGGGTTGATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGAAGCTGACGTGCGATGATATTCTGCGTCTTCCAGTTGAAGAATAC
GTTCCTCACTCCTGGCTTTTCCCTCGTTGTCACCTCGTGCTGCATCACGG
AGGGTTGGGCTCAACGATGGCGTGCATAGGCGCAAGAGGAGGTGGAGGAG
GAGGAGGAGGAGGAAAAGAGGAAGGAGGAGAAGGAGGAGGAGGAGGAGGA
GGCGAAGGAGGAGGCGAGGGAGGAGAAGGAGGAGGGAGGGGGGTTCCTCA
ACTGGTGCTGCCATGTACGGAGGAGCAGCGTGTTTGGGGGGAACGTGTCG
CCTATCTGGGCATAGGGGCAGTGATGGGGAGGGAGGGAGAGCAGGACGGA
GGGATAGAGGAAGCGGTGTACCAGGCGTTGAAGGGATTGGAGCGAGGGAG
GGAGATCTGTCTGAAGACGATAAGGCGGTATGCAGGGTGGTTGAGGGAGG
AGGATGGGGTGGGAAGGGCAGTGGAGGTGTTGATGGAAGAGATGAGCAGG
AGGAGAAAGAAGAGGAGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGGGAGGAGGAATGA
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protein sequence of NO01G00620.1

>NO01G00620.1-protein ID=NO01G00620.1-protein|Name=NO01G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MASTSNSIVFLALGSLGDLLPLLAIARRIAQQDHDQLDVVVVTHAQYLSR
LHALLHQSSNPLSPLRLVLRGIPTPPLPLPNAGPSHVQHELDACLAACRI
HTPIALLAFNLVAKFGIHLAELLSIPSYVLLHPSLAPPSPEPSLAYVRSM
LGANLFKMMLRVEESEERFKEMTHWMLSLFLPVYHTFRERHGLCPCISSP
SFQPSSSSSSSSSSLSLTARLALTGGTPLLYGVSEFFFPKPGYWPKAAVF
CGAWRWEEEDVREGKEEWKEKWMPSEALQRFVEGEEGKEDTEATTCALAR
KGGEGEGKEGAMALPVLPASLPRPPLICLDMGSCVEVGLRTRSEWEGLIE
GVVEALRRAFPGGGGGGGREGGRGGGSPDNPEKGEKRTGYGSGGFRLLLL
HFPPSSSLGAEVALEKDEEWGVDEQQQQQQQQQQQKLTCDDILRLPVEEY
VPHSWLFPRCHLVLHHGGLGSTMACIGARGGGGGGGGGKEEGGEGGGGGG
GEGGGEGGEGGGRGVPQLVLPCTEEQRVWGERVAYLGIGAVMGREGEQDG
GIEEAVYQALKGLERGREICLKTIRRYAGWLREEDGVGRAVEVLMEEMSR
RRKKRRKEEEEEEEEEEEGEEE*
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mRNA from alignment at chr1:163175..165043+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00620.1 ID=NO01G00620.1|Name=NO01G00620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp|location=Sequence derived from alignment at chr1:163175..165043+ (Nannochloropsis oceanica)
ATGGCGTCCACTTCAAACAGCATCGTCTTCCTTGCCCTTGGCTCCCTAGG GGACCTCTTGCCGCTCCTTGCCATAGCCCGGCGTATCGCGCAGCAGGATC ATGACCAGCTCGATGTGGTCGTCGTCACCCACGCTCAATACCTGTCCCGT CTCCATGCGCTCCTCCACCAATCTTCCAATCCTCTTTCCCCCCTCCGCCT CGTCCTCCGAGGCATCCCCACACCGCCCTTACCCCTACCAAACGCCGGCC CCTCCCACGTTCAACACGAACTCGACGCCTGCCTCGCCGCCTGTCGCATT CACACCCCTATTGCCCTCCTCGCTTTTAATCTCGTCGCCAAGTTTGGCAT TCACCTCGCCGAGCTCCTCTCTATCCCTTCCTACGTCCTCCTCCACCCCT CCCTCGCCCCTCCCTCGCCCGAGCCCTCCCTCGCATATGTCAGGTCCATG TTGGGCGCAAATTTATTCAAGATGATGCTAAGGGTAGAGGAAAGCGAAGA GAGATTCAAGGAAATGACGCACTGGATGCTCAGCCTCTTCCTGCCTGTCT ATCACACCTTTCGAGAGCGGCACGGCCTGTGTCCCTGCATCTCCTCGCCG TCCTTCCAGCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCCTCTCACT CACTGCTCGTCTAGCCCTGACGGGTGGCACGCCCCTCCTGTACGGTGTCA GTGAATTCTTCTTCCCCAAACCCGGCTACTGGCCAAAGGCGGCCGTTTTC TGTGGCGCCTGGAGGTGGGAGGAGGAGGACGTGAGGGAGGGGAAGGAGGA ATGGAAGGAGAAATGGATGCCTTCGGAGGCTCTGCAGCGGTTTGTGGAAG GCGAGGAAGGGAAGGAGGACACAGAGGCGACGACATGTGCGCTGGCACGT AAAGGAGGAGAAGGAGAAGGAAAAGAGGGAGCAATGGCACTACCAGTGCT TCCTGCCTCCCTTCCCCGTCCCCCATTGATCTGTCTGGACATGGGTTCGT GCGTGGAGGTTGGACTTCGGACACGGAGTGAATGGGAGGGATTGATTGAG GGTGTGGTGGAGGCGCTGCGACGCGCTTTCCCTGGAGGGGGAGGAGGAGG AGGGAGAGAGGGAGGGAGGGGGGGAGGATCACCTGACAACCCTGAGAAAG GGGAGAAGAGGACAGGATATGGCAGCGGGGGCTTTCGTTTGCTGTTGCTG CACTTCCCTCCCTCCTCTTCACTGGGGGCGGAGGTGGCGTTGGAGAAAGA CGAGGAATGGGGGGTTGATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGAAGCTGACGTGCGATGATATTCTGCGTCTTCCAGTTGAAGAATAC GTTCCTCACTCCTGGCTTTTCCCTCGTTGTCACCTCGTGCTGCATCACGG AGGGTTGGGCTCAACGATGGCGTGCATAGGCGCAAGAGGAGGTGGAGGAG GAGGAGGAGGAGGAAAAGAGGAAGGAGGAGAAGGAGGAGGAGGAGGAGGA GGCGAAGGAGGAGGCGAGGGAGGAGAAGGAGGAGGGAGGGGGGTTCCTCA ACTGGTGCTGCCATGTACGGAGGAGCAGCGTGTTTGGGGGGAACGTGTCG CCTATCTGGGCATAGGGGCAGTGATGGGGAGGGAGGGAGAGCAGGACGGA GGGATAGAGGAAGCGGTGTACCAGGCGTTGAAGGGATTGGAGCGAGGGAG GGAGATCTGTCTGAAGACGATAAGGCGGTATGCAGGGTGGTTGAGGGAGG AGGATGGGGTGGGAAGGGCAGTGGAGGTGTTGATGGAAGAGATGAGCAGG AGGAGAAAGAAGAGGAGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA GGAGGGGGAGGAGGAATGA
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Coding sequence (CDS) from alignment at chr1:163175..165043+

>NO01G00620.1 ID=NO01G00620.1|Name=NO01G00620.1|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at chr1:163175..165043+ (Nannochloropsis oceanica)
ATGGCGTCCACTTCAAACAGCATCGTCTTCCTTGCCCTTGGCTCCCTAGG
GGACCTCTTGCCGCTCCTTGCCATAGCCCGGCGTATCGCGCAGCAGGATC
ATGACCAGCTCGATGTGGTCGTCGTCACCCACGCTCAATACCTGTCCCGT
CTCCATGCGCTCCTCCACCAATCTTCCAATCCTCTTTCCCCCCTCCGCCT
CGTCCTCCGAGGCATCCCCACACCGCCCTTACCCCTACCAAACGCCGGCC
CCTCCCACGTTCAACACGAACTCGACGCCTGCCTCGCCGCCTGTCGCATT
CACACCCCTATTGCCCTCCTCGCTTTTAATCTCGTCGCCAAGTTTGGCAT
TCACCTCGCCGAGCTCCTCTCTATCCCTTCCTACGTCCTCCTCCACCCCT
CCCTCGCCCCTCCCTCGCCCGAGCCCTCCCTCGCATATGTCAGGTCCATG
TTGGGCGCAAATTTATTCAAGATGATGCTAAGGGTAGAGGAAAGCGAAGA
GAGATTCAAGGAAATGACGCACTGGATGCTCAGCCTCTTCCTGCCTGTCT
ATCACACCTTTCGAGAGCGGCACGGCCTGTGTCCCTGCATCTCCTCGCCG
TCCTTCCAGCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTTCCCTCTCACT
CACTGCTCGTCTAGCCCTGACGGGTGGCACGCCCCTCCTGTACGGTGTCA
GTGAATTCTTCTTCCCCAAACCCGGCTACTGGCCAAAGGCGGCCGTTTTC
TGTGGCGCCTGGAGGTGGGAGGAGGAGGACGTGAGGGAGGGGAAGGAGGA
ATGGAAGGAGAAATGGATGCCTTCGGAGGCTCTGCAGCGGTTTGTGGAAG
GCGAGGAAGGGAAGGAGGACACAGAGGCGACGACATGTGCGCTGGCACGT
AAAGGAGGAGAAGGAGAAGGAAAAGAGGGAGCAATGGCACTACCAGTGCT
TCCTGCCTCCCTTCCCCGTCCCCCATTGATCTGTCTGGACATGGGTTCGT
GCGTGGAGGTTGGACTTCGGACACGGAGTGAATGGGAGGGATTGATTGAG
GGTGTGGTGGAGGCGCTGCGACGCGCTTTCCCTGGAGGGGGAGGAGGAGG
AGGGAGAGAGGGAGGGAGGGGGGGAGGATCACCTGACAACCCTGAGAAAG
GGGAGAAGAGGACAGGATATGGCAGCGGGGGCTTTCGTTTGCTGTTGCTG
CACTTCCCTCCCTCCTCTTCACTGGGGGCGGAGGTGGCGTTGGAGAAAGA
CGAGGAATGGGGGGTTGATGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGAAGCTGACGTGCGATGATATTCTGCGTCTTCCAGTTGAAGAATAC
GTTCCTCACTCCTGGCTTTTCCCTCGTTGTCACCTCGTGCTGCATCACGG
AGGGTTGGGCTCAACGATGGCGTGCATAGGCGCAAGAGGAGGTGGAGGAG
GAGGAGGAGGAGGAAAAGAGGAAGGAGGAGAAGGAGGAGGAGGAGGAGGA
GGCGAAGGAGGAGGCGAGGGAGGAGAAGGAGGAGGGAGGGGGGTTCCTCA
ACTGGTGCTGCCATGTACGGAGGAGCAGCGTGTTTGGGGGGAACGTGTCG
CCTATCTGGGCATAGGGGCAGTGATGGGGAGGGAGGGAGAGCAGGACGGA
GGGATAGAGGAAGCGGTGTACCAGGCGTTGAAGGGATTGGAGCGAGGGAG
GGAGATCTGTCTGAAGACGATAAGGCGGTATGCAGGGTGGTTGAGGGAGG
AGGATGGGGTGGGAAGGGCAGTGGAGGTGTTGATGGAAGAGATGAGCAGG
AGGAGAAAGAAGAGGAGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGGGAGGAGGAATGA
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Synonyms
Publications