NO01G00600.1, NO01G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00600.1
Unique NameNO01G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1239
Alignment locationchr1:160574..161812 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:160574..161812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00600.1 vs.
Match: BAW99689.1 (lysophosphatidate acyltransferase 1 [Nannochloropsis sp. NIES-2145])

HSP 1 Score: 607.4 bits (1565), Expect = 3.200e-170
Identity = 287/288 (99.65%), Postives = 287/288 (99.65%), Query Frame = 0 
Query:  125 MPSSSSSSWSSSWQRYIDLFTPGKLPRALIMINHLSWADSFVLSPWLHAHNSVNGDTCWPMWRGFINMPLGWIAYMSECPVLGYGKEMDLETIRKSVSRFFQRRMTKFFLFPEGAVFRECMLQKSHEYAQANNLPLLDHCLLPKHGAFLEAGQALHRQGMETLVDITIAYPPTSSLYNAPFNVIDLVKYHPTPLYVHLNVRTFDMREIPWEEEDKVRQWLTRRFEEKDRFLDDYYKGKGGVMVEGGKEEGPRWRDLTLDVLLWMGVQVVMYTVLYALGARVLGRMTVR 413
            MPSSSSSSWSSSWQRYIDLFTPGKLPRALIMINHLSWADSFVLSPWLHAHNSVNGDTCWPMWRGFINMPLGWIAYMSECPVLGYGKEMDLETIRKSVSRFFQRRMTKFFLFPEGAVFRECMLQKSHEYAQANNLPLLDHCLLPKHGAFLEAGQALHRQGMETLVDITIAYPPTSSLYNAPFNVIDLVKYHPTPLYVHLNVRTFDMREIPWEEEDKVRQWLTRRFEEKDRFLDDYYKGKGGVMVEGGKEEGPRWRDL LDVLLWMGVQVVMYTVLYALGARVLGRMTVR
Sbjct:    1 MPSSSSSSWSSSWQRYIDLFTPGKLPRALIMINHLSWADSFVLSPWLHAHNSVNGDTCWPMWRGFINMPLGWIAYMSECPVLGYGKEMDLETIRKSVSRFFQRRMTKFFLFPEGAVFRECMLQKSHEYAQANNLPLLDHCLLPKHGAFLEAGQALHRQGMETLVDITIAYPPTSSLYNAPFNVIDLVKYHPTPLYVHLNVRTFDMREIPWEEEDKVRQWLTRRFEEKDRFLDDYYKGKGGVMVEGGKEEGPRWRDLALDVLLWMGVQVVMYTVLYALGARVLGRMTVR 288
The following BLAST results are available for this feature:
BLAST of NO01G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
BAW99689.13.200e-17099.65lysophosphatidate acyltransferase 1 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00600NO01G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00600.1NO01G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00600.1.cds1NO01G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00600.1 ID=NO01G00600.1|Name=NO01G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp
ATGGGGACGCCAACAACGCCGTCCACGCCCCAACGAAATGGTGAGCGGCT
CGAGACCCGACCCTTGGACACGTCGAGCGACAAAGTAAATGGTGGCGCCG
GCGGCAGCAAAACCCATGAGGTCTCGGCATCCATCTCGGCCGATTTATTA
GGCTACTTCCTCGCGGTACTCATTCTCCTAAACTTCTGGTCGGCCGCATT
TTTGGAACTAGTCATGTACGTGGTGTTTGCGCCGATGTATCCACCAATAT
GGCACGCAACCCGCATCCTTGGCGTTCGCTTCGGCTGGCTCCCCCCTATG
ATCTTCCTCAAGTGGGCCAACATTCGACTGCGGGTCACAGGGCACGCTGC
AGCAGCTTCTGGCCTGGGGACCATGCCTTCTTCTTCCTCCTCCTCCTGGT
CCTCGTCATGGCAACGGTACATCGACCTTTTCACCCCCGGCAAGCTTCCC
CGTGCCTTGATCATGATCAACCACCTCTCGTGGGCAGATTCCTTCGTCCT
CTCCCCTTGGCTGCATGCCCACAACAGCGTCAACGGCGATACCTGTTGGC
CAATGTGGCGGGGGTTCATCAACATGCCCTTGGGATGGATTGCCTACATG
TCAGAATGCCCTGTTTTAGGGTACGGGAAAGAGATGGACCTCGAGACAAT
CCGCAAGAGCGTTTCGCGTTTTTTTCAACGGAGGATGACGAAGTTTTTCC
TCTTCCCCGAGGGCGCCGTTTTTCGGGAATGTATGCTTCAGAAATCCCAC
GAATACGCCCAAGCTAACAACCTTCCCCTGCTCGATCACTGCCTGCTGCC
AAAGCACGGTGCCTTCCTCGAGGCTGGCCAAGCGCTGCATCGGCAGGGAA
TGGAGACACTAGTGGACATAACCATTGCCTACCCCCCAACTTCCTCCCTG
TACAATGCACCTTTCAATGTCATAGACTTGGTCAAATATCATCCAACGCC
ACTGTATGTGCATTTGAATGTGCGGACGTTCGATATGCGGGAGATCCCCT
GGGAGGAGGAGGATAAGGTGCGGCAGTGGCTTACGCGTCGGTTTGAAGAG
AAGGATCGTTTCTTGGACGATTACTACAAGGGAAAGGGAGGGGTGATGGT
GGAGGGGGGGAAGGAGGAAGGGCCCCGATGGAGAGATTTGACATTGGATG
TACTGCTGTGGATGGGGGTACAAGTGGTCATGTATACAGTGTTGTACGCG
CTGGGGGCGAGGGTGCTGGGGAGGATGACGGTGAGGTGA
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protein sequence of NO01G00600.1

>NO01G00600.1-protein ID=NO01G00600.1-protein|Name=NO01G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MGTPTTPSTPQRNGERLETRPLDTSSDKVNGGAGGSKTHEVSASISADLL
GYFLAVLILLNFWSAAFLELVMYVVFAPMYPPIWHATRILGVRFGWLPPM
IFLKWANIRLRVTGHAAAASGLGTMPSSSSSSWSSSWQRYIDLFTPGKLP
RALIMINHLSWADSFVLSPWLHAHNSVNGDTCWPMWRGFINMPLGWIAYM
SECPVLGYGKEMDLETIRKSVSRFFQRRMTKFFLFPEGAVFRECMLQKSH
EYAQANNLPLLDHCLLPKHGAFLEAGQALHRQGMETLVDITIAYPPTSSL
YNAPFNVIDLVKYHPTPLYVHLNVRTFDMREIPWEEEDKVRQWLTRRFEE
KDRFLDDYYKGKGGVMVEGGKEEGPRWRDLTLDVLLWMGVQVVMYTVLYA
LGARVLGRMTVR*
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mRNA from alignment at chr1:160574..161812+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00600.1 ID=NO01G00600.1|Name=NO01G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at chr1:160574..161812+ (Nannochloropsis oceanica)
ATGGGGACGCCAACAACGCCGTCCACGCCCCAACGAAATGGTGAGCGGCT
CGAGACCCGACCCTTGGACACGTCGAGCGACAAAGTAAATGGTGGCGCCG
GCGGCAGCAAAACCCATGAGGTCTCGGCATCCATCTCGGCCGATTTATTA
GGCTACTTCCTCGCGGTACTCATTCTCCTAAACTTCTGGTCGGCCGCATT
TTTGGAACTAGTCATGTACGTGGTGTTTGCGCCGATGTATCCACCAATAT
GGCACGCAACCCGCATCCTTGGCGTTCGCTTCGGCTGGCTCCCCCCTATG
ATCTTCCTCAAGTGGGCCAACATTCGACTGCGGGTCACAGGGCACGCTGC
AGCAGCTTCTGGCCTGGGGACCATGCCTTCTTCTTCCTCCTCCTCCTGGT
CCTCGTCATGGCAACGGTACATCGACCTTTTCACCCCCGGCAAGCTTCCC
CGTGCCTTGATCATGATCAACCACCTCTCGTGGGCAGATTCCTTCGTCCT
CTCCCCTTGGCTGCATGCCCACAACAGCGTCAACGGCGATACCTGTTGGC
CAATGTGGCGGGGGTTCATCAACATGCCCTTGGGATGGATTGCCTACATG
TCAGAATGCCCTGTTTTAGGGTACGGGAAAGAGATGGACCTCGAGACAAT
CCGCAAGAGCGTTTCGCGTTTTTTTCAACGGAGGATGACGAAGTTTTTCC
TCTTCCCCGAGGGCGCCGTTTTTCGGGAATGTATGCTTCAGAAATCCCAC
GAATACGCCCAAGCTAACAACCTTCCCCTGCTCGATCACTGCCTGCTGCC
AAAGCACGGTGCCTTCCTCGAGGCTGGCCAAGCGCTGCATCGGCAGGGAA
TGGAGACACTAGTGGACATAACCATTGCCTACCCCCCAACTTCCTCCCTG
TACAATGCACCTTTCAATGTCATAGACTTGGTCAAATATCATCCAACGCC
ACTGTATGTGCATTTGAATGTGCGGACGTTCGATATGCGGGAGATCCCCT
GGGAGGAGGAGGATAAGGTGCGGCAGTGGCTTACGCGTCGGTTTGAAGAG
AAGGATCGTTTCTTGGACGATTACTACAAGGGAAAGGGAGGGGTGATGGT
GGAGGGGGGGAAGGAGGAAGGGCCCCGATGGAGAGATTTGACATTGGATG
TACTGCTGTGGATGGGGGTACAAGTGGTCATGTATACAGTGTTGTACGCG
CTGGGGGCGAGGGTGCTGGGGAGGATGACGGTGAGGTGA
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Coding sequence (CDS) from alignment at chr1:160574..161812+

>NO01G00600.1 ID=NO01G00600.1|Name=NO01G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at chr1:160574..161812+ (Nannochloropsis oceanica)
ATGGGGACGCCAACAACGCCGTCCACGCCCCAACGAAATGGTGAGCGGCT
CGAGACCCGACCCTTGGACACGTCGAGCGACAAAGTAAATGGTGGCGCCG
GCGGCAGCAAAACCCATGAGGTCTCGGCATCCATCTCGGCCGATTTATTA
GGCTACTTCCTCGCGGTACTCATTCTCCTAAACTTCTGGTCGGCCGCATT
TTTGGAACTAGTCATGTACGTGGTGTTTGCGCCGATGTATCCACCAATAT
GGCACGCAACCCGCATCCTTGGCGTTCGCTTCGGCTGGCTCCCCCCTATG
ATCTTCCTCAAGTGGGCCAACATTCGACTGCGGGTCACAGGGCACGCTGC
AGCAGCTTCTGGCCTGGGGACCATGCCTTCTTCTTCCTCCTCCTCCTGGT
CCTCGTCATGGCAACGGTACATCGACCTTTTCACCCCCGGCAAGCTTCCC
CGTGCCTTGATCATGATCAACCACCTCTCGTGGGCAGATTCCTTCGTCCT
CTCCCCTTGGCTGCATGCCCACAACAGCGTCAACGGCGATACCTGTTGGC
CAATGTGGCGGGGGTTCATCAACATGCCCTTGGGATGGATTGCCTACATG
TCAGAATGCCCTGTTTTAGGGTACGGGAAAGAGATGGACCTCGAGACAAT
CCGCAAGAGCGTTTCGCGTTTTTTTCAACGGAGGATGACGAAGTTTTTCC
TCTTCCCCGAGGGCGCCGTTTTTCGGGAATGTATGCTTCAGAAATCCCAC
GAATACGCCCAAGCTAACAACCTTCCCCTGCTCGATCACTGCCTGCTGCC
AAAGCACGGTGCCTTCCTCGAGGCTGGCCAAGCGCTGCATCGGCAGGGAA
TGGAGACACTAGTGGACATAACCATTGCCTACCCCCCAACTTCCTCCCTG
TACAATGCACCTTTCAATGTCATAGACTTGGTCAAATATCATCCAACGCC
ACTGTATGTGCATTTGAATGTGCGGACGTTCGATATGCGGGAGATCCCCT
GGGAGGAGGAGGATAAGGTGCGGCAGTGGCTTACGCGTCGGTTTGAAGAG
AAGGATCGTTTCTTGGACGATTACTACAAGGGAAAGGGAGGGGTGATGGT
GGAGGGGGGGAAGGAGGAAGGGCCCCGATGGAGAGATTTGACATTGGATG
TACTGCTGTGGATGGGGGTACAAGTGGTCATGTATACAGTGTTGTACGCG
CTGGGGGCGAGGGTGCTGGGGAGGATGACGGTGAGGTGA
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Synonyms
Publications