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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:147776..150151 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00550.1 vs.
Match: EWM28998.1 (hypothetical protein Naga_100373g6 [Nannochloropsis gaditana]) HSP 1 Score: 86.3 bits (212), Expect = 4.700e-13 Identity = 255/819 (31.14%), Postives = 346/819 (42.25%), Query Frame = 0
Query: 1 MLNRRQAFRRCKVRRRHASYGTAL-----APTPTS--SPPKITATDAIKRCG-SQDSYTSTCCSNSSCSDRSSGSTSDGPEGQSQGSSPPDSP-----LSGDMRMEGMGLGGIMLGSPSSTTSSSSSSPLS--YSHDQARLSPPPRVPGPGPYSILSLPPSPLLRDEAERNPPPPSSLPTMQPQDTEWQQRHQTPSSSTSSSTSSSRNSSSGFSSCSSRSSNSNSSSSSSTSRGGGSRLARWWHLLGHPTFLSPLALWSSPVYYCDLPPLRRPRRSHRSPSCRAPAAWEGGTKKDVHVVVDGTKSGAGMPPPALALPPPAHFSTRS-KEGAATAASAAVA--------AAAGAASGRLG--LPSSSFVTSDRGSCSVSC--APAGAGYMDAGLDGK---WLEGEEEEDGGWEGGKEEGRE--GGEPEEERPTSAARREGIKE---------GEVDDDGDEEEEIDNISPL-SGAASFFSPFTEDEEEAEEEDEADEEEEDPA--------------QVRFSDVDRIVLIPARCDYDEETKELLWWALEDYVGFKKRSLRLLNMGKKEFVTLDPIELKWEEEERRMEGREVEEEEEEEE----EDDKKEKEEEVEEEEEEEEEEEEGEEEEEEEAVPVTDRAQSVMMGEGERGCSPSPATDQPSSRESSSSVDSSIPVRLMKALSGEEIDLSVSAQLKEGGRGGGNASSSPLLTRGLVEETSGPVPSIYSFISHNTPSHLLTLPHGRTRAHRRYSSLSSSPVEGAFSSLPLSFQSLLLSSGKGGRKEGEEAAAAAAAAGRRYDYLVGALDLATALGVGRK 759
MLNRRQAFRRCKVRRR + T AP S SP + D C S+ S+ S S+ SSG TS G + SPP SP L G E + G L SPSST SS +SSP S + Q+RL PP + P SPL + +R SS P P+ S R + +++ +L WWH+L PTF SPL+LWSSP ++ D PP R S S + V K +P P+L PA FS+ + + GA T A A A AS G +P +SFV+ S +C A A + M A + L G E G G +EEG + G +E P RR+G K+ G+ + G++ + + PL S A +P + A + P+ +V FS+V+R+VLIPA D D TK+ L+W L DYV FK R+LRL+ +GKK F+ LD IEL WE E+R E E EE E E+ K+ KEE +E E + + G+ E P+ V E P PAT PS + + + +P + + + + S SA ++ G ++ LL LV+ S P PS+ S++SH PSHL + HRRYSSL SSP EG + SG+G + GE+ A A R LV LDLA + GR+
Sbjct: 1 MLNRRQAFRRCKVRRRRVPFETNRGIGYSAPKLDSEQSPSSCASIDGGSPCRKSESSHCSNLFEGSNDDSNSSGCTSPGFDSTC---SPPPSPSWTEALEGTDSCESATMLGTPLSSPSSTPSSPTSSPWSAAFLEYQSRL-PPEYYEEHAAAAAREWPVSPLRYGKPKRELWS-SSPPPPPPR-----------------------------KSLKERLAFLGWGDRPVSAQRRREKLTPWWHVLSFPTFPSPLSLWSSPAFFAD-PPFHDFRAQSLSSSTTTSLSTSSHPSGPDDV---AQKHPRRLPSPSL----PATFSSDAWRSGAVTGAGGTGAKLPKPSEKAFRPPASTPCGAAVPPASFVSISSAPASAACDRALARSIAMPASSTPEAQAALSGTESRQVGGAGREEEGNQENAGYTQEGSP---RRRKGKKQRKRNREKKGGKQKETGEKAAGTETLPPLPSPATDTGAPPSTARAAPSSSPAATADAPVPSPTPLTAPARPRAVPRVHFSEVERVVLIPALGDMDAGTKDALFWGLMDYVAFKDRTLRLMGLGKKNFMELDAIELVWEAEDRGEELTLAEAEEMLEAARAVEERKEVKEEGEDETEGSQAQGTAGKAVETGLVAPLPIAVVEVEAAALEPSLIPRPAT--PSPPLGAPAPTAHLPPEVSEGV----LRRSTSASSEDVG-------TALLLHDTLVDPPSFP-PSLGSYLSHENPSHL-----RHRQRHRRYSSLCSSPAEG---------RKARYRSGEGREEGGEDGKEEALRAREREAALVMWLDLAVSSLGGRR 746
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00550.1 ID=NO01G00550.1|Name=NO01G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2376bp ATGTTGAACCGTCGCCAGGCCTTCCGCCGCTGCAAGGTCCGCCGGAGGCA TGCCAGCTATGGTACAGCACTAGCTCCCACCCCTACAAGTAGCCCCCCCA AAATCACCGCCACGGACGCGATAAAGCGGTGTGGAAGCCAAGACAGCTAT ACCAGCACCTGCTGCAGCAACTCGAGTTGCAGTGATCGCAGCAGTGGGAG CACGAGTGACGGGCCCGAGGGCCAAAGCCAAGGTTCATCTCCTCCTGACA GCCCGCTGTCGGGAGATATGAGAATGGAGGGCATGGGCCTCGGCGGTATC ATGCTAGGCTCCCCTTCGTCCACCACCTCCTCCTCCTCGTCCTCTCCCTT GTCCTACTCTCACGATCAAGCGCGGTTGTCACCACCTCCACGCGTTCCAG GACCAGGACCATATTCCATCCTGTCGTTGCCACCCTCCCCGCTACTCCGG GACGAGGCAGAGAGGAACCCTCCGCCACCATCATCACTTCCGACCATGCA GCCACAAGATACAGAATGGCAGCAGAGACACCAGACACCTAGCAGTAGTA CCAGCAGTAGTACCAGCAGCAGCCGCAACAGCAGCAGTGGCTTCAGCAGT TGCAGTTCGAGAAGCAGCAACAGCAACAGCAGCAGTAGCAGCAGCACCAG CAGGGGAGGGGGCTCGCGCTTGGCACGATGGTGGCATCTGTTGGGTCATC CTACTTTCCTCTCTCCCCTCGCACTCTGGTCTAGCCCTGTCTACTACTGC GACCTTCCCCCACTCCGTCGCCCGCGTCGCTCGCATCGATCACCGTCCTG CCGTGCTCCTGCAGCCTGGGAGGGAGGAACAAAAAAGGACGTTCACGTGG TCGTCGATGGGACGAAGAGCGGAGCAGGAATGCCGCCCCCTGCCTTGGCT CTACCACCGCCGGCCCACTTCTCGACGCGGAGCAAGGAAGGAGCAGCAAC AGCGGCATCAGCAGCAGTAGCAGCAGCAGCAGGAGCAGCCTCAGGACGGC TGGGTTTGCCTTCCTCCTCATTTGTAACTTCGGATCGCGGCAGCTGTAGC GTCAGCTGTGCCCCGGCAGGCGCGGGGTACATGGATGCGGGATTGGACGG CAAGTGGCTTGAAGGAGAGGAGGAGGAAGATGGAGGATGGGAGGGAGGGA AAGAGGAAGGGAGGGAGGGAGGAGAGCCGGAGGAAGAACGGCCCACGTCA GCGGCGAGGAGGGAGGGAATTAAGGAGGGTGAGGTTGATGATGACGGTGA TGAGGAGGAGGAGATTGATAACATTTCCCCTCTCTCAGGGGCCGCCTCTT TTTTCTCTCCATTCACAGAGGATGAGGAGGAGGCAGAGGAGGAGGATGAG GCGGATGAGGAGGAAGAGGATCCGGCACAGGTTCGTTTTTCGGATGTGGA CCGCATTGTATTAATCCCCGCAAGATGTGATTACGACGAGGAGACGAAGG AGCTGTTGTGGTGGGCTTTGGAAGACTATGTGGGTTTCAAGAAGAGGAGC CTGAGGCTTTTGAATATGGGGAAGAAGGAGTTTGTGACGTTGGACCCGAT TGAGCTGAAGTGGGAGGAGGAGGAGAGGCGCATGGAGGGACGGGAGGTGG AGGAGGAAGAGGAGGAGGAAGAGGAGGATGACAAGAAAGAAAAAGAAGAA GAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGAGGA GGAGGAAGAGGAGGAGGCAGTACCAGTGACTGATCGAGCGCAGTCTGTGA TGATGGGAGAAGGTGAGCGAGGCTGTTCTCCTTCTCCCGCGACCGATCAA CCTTCCTCCCGCGAGTCCTCCTCCTCCGTCGATTCCTCTATTCCCGTCCG GCTCATGAAGGCTCTGAGTGGGGAGGAAATCGATTTGAGCGTGTCGGCTC AGTTGAAAGAAGGAGGAAGGGGGGGAGGAAACGCCTCCTCCTCCCCCCTC CTCACGCGCGGCCTTGTGGAGGAGACCTCAGGCCCCGTCCCGTCTATTTA TTCGTTCATCTCGCACAACACCCCCTCCCACCTCCTCACCCTGCCCCACG GCCGCACCCGGGCCCACCGCCGCTACTCCTCCCTGTCCTCCTCCCCTGTT GAGGGTGCTTTCTCCTCCCTCCCTCTCTCTTTTCAGTCCCTGCTCTTGTC GAGCGGGAAGGGCGGGAGGAAGGAAGGGGAGGAAGCAGCAGCAGCTGCAG CAGCAGCAGGCCGGCGGTACGATTATCTGGTGGGAGCTTTGGATTTAGCC ACAGCCTTGGGAGTAGGGAGGAAGGGAAGTAGGATGATCATGGGGAAATC CGGCCATGAAGGAGCGGTGTCGTGGGTGCATTTACGGGAGGACGAGATAA TGGAGTTGAGTCAGTCGCAGGCCTAG back to topprotein sequence of NO01G00550.1 >NO01G00550.1-protein ID=NO01G00550.1-protein|Name=NO01G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=792bp MLNRRQAFRRCKVRRRHASYGTALAPTPTSSPPKITATDAIKRCGSQDSY TSTCCSNSSCSDRSSGSTSDGPEGQSQGSSPPDSPLSGDMRMEGMGLGGI MLGSPSSTTSSSSSSPLSYSHDQARLSPPPRVPGPGPYSILSLPPSPLLR DEAERNPPPPSSLPTMQPQDTEWQQRHQTPSSSTSSSTSSSRNSSSGFSS CSSRSSNSNSSSSSSTSRGGGSRLARWWHLLGHPTFLSPLALWSSPVYYC DLPPLRRPRRSHRSPSCRAPAAWEGGTKKDVHVVVDGTKSGAGMPPPALA LPPPAHFSTRSKEGAATAASAAVAAAAGAASGRLGLPSSSFVTSDRGSCS VSCAPAGAGYMDAGLDGKWLEGEEEEDGGWEGGKEEGREGGEPEEERPTS AARREGIKEGEVDDDGDEEEEIDNISPLSGAASFFSPFTEDEEEAEEEDE ADEEEEDPAQVRFSDVDRIVLIPARCDYDEETKELLWWALEDYVGFKKRS LRLLNMGKKEFVTLDPIELKWEEEERRMEGREVEEEEEEEEEDDKKEKEE EVEEEEEEEEEEEEGEEEEEEEAVPVTDRAQSVMMGEGERGCSPSPATDQ PSSRESSSSVDSSIPVRLMKALSGEEIDLSVSAQLKEGGRGGGNASSSPL LTRGLVEETSGPVPSIYSFISHNTPSHLLTLPHGRTRAHRRYSSLSSSPV EGAFSSLPLSFQSLLLSSGKGGRKEGEEAAAAAAAAGRRYDYLVGALDLA TALGVGRKGSRMIMGKSGHEGAVSWVHLREDEIMELSQSQA* back to topmRNA from alignment at chr1:147776..150151+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00550.1 ID=NO01G00550.1|Name=NO01G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2376bp|location=Sequence derived from alignment at chr1:147776..150151+ (Nannochloropsis oceanica) ATGTTGAACCGTCGCCAGGCCTTCCGCCGCTGCAAGGTCCGCCGGAGGCA
TGCCAGCTATGGTACAGCACTAGCTCCCACCCCTACAAGTAGCCCCCCCA
AAATCACCGCCACGGACGCGATAAAGCGGTGTGGAAGCCAAGACAGCTAT
ACCAGCACCTGCTGCAGCAACTCGAGTTGCAGTGATCGCAGCAGTGGGAG
CACGAGTGACGGGCCCGAGGGCCAAAGCCAAGGTTCATCTCCTCCTGACA
GCCCGCTGTCGGGAGATATGAGAATGGAGGGCATGGGCCTCGGCGGTATC
ATGCTAGGCTCCCCTTCGTCCACCACCTCCTCCTCCTCGTCCTCTCCCTT
GTCCTACTCTCACGATCAAGCGCGGTTGTCACCACCTCCACGCGTTCCAG
GACCAGGACCATATTCCATCCTGTCGTTGCCACCCTCCCCGCTACTCCGG
GACGAGGCAGAGAGGAACCCTCCGCCACCATCATCACTTCCGACCATGCA
GCCACAAGATACAGAATGGCAGCAGAGACACCAGACACCTAGCAGTAGTA
CCAGCAGTAGTACCAGCAGCAGCCGCAACAGCAGCAGTGGCTTCAGCAGT
TGCAGTTCGAGAAGCAGCAACAGCAACAGCAGCAGTAGCAGCAGCACCAG
CAGGGGAGGGGGCTCGCGCTTGGCACGATGGTGGCATCTGTTGGGTCATC
CTACTTTCCTCTCTCCCCTCGCACTCTGGTCTAGCCCTGTCTACTACTGC
GACCTTCCCCCACTCCGTCGCCCGCGTCGCTCGCATCGATCACCGTCCTG
CCGTGCTCCTGCAGCCTGGGAGGGAGGAACAAAAAAGGACGTTCACGTGG
TCGTCGATGGGACGAAGAGCGGAGCAGGAATGCCGCCCCCTGCCTTGGCT
CTACCACCGCCGGCCCACTTCTCGACGCGGAGCAAGGAAGGAGCAGCAAC
AGCGGCATCAGCAGCAGTAGCAGCAGCAGCAGGAGCAGCCTCAGGACGGC
TGGGTTTGCCTTCCTCCTCATTTGTAACTTCGGATCGCGGCAGCTGTAGC
GTCAGCTGTGCCCCGGCAGGCGCGGGGTACATGGATGCGGGATTGGACGG
CAAGTGGCTTGAAGGAGAGGAGGAGGAAGATGGAGGATGGGAGGGAGGGA
AAGAGGAAGGGAGGGAGGGAGGAGAGCCGGAGGAAGAACGGCCCACGTCA
GCGGCGAGGAGGGAGGGAATTAAGGAGGGTGAGGTTGATGATGACGGTGA
TGAGGAGGAGGAGATTGATAACATTTCCCCTCTCTCAGGGGCCGCCTCTT
TTTTCTCTCCATTCACAGAGGATGAGGAGGAGGCAGAGGAGGAGGATGAG
GCGGATGAGGAGGAAGAGGATCCGGCACAGGTTCGTTTTTCGGATGTGGA
CCGCATTGTATTAATCCCCGCAAGATGTGATTACGACGAGGAGACGAAGG
AGCTGTTGTGGTGGGCTTTGGAAGACTATGTGGGTTTCAAGAAGAGGAGC
CTGAGGCTTTTGAATATGGGGAAGAAGGAGTTTGTGACGTTGGACCCGAT
TGAGCTGAAGTGGGAGGAGGAGGAGAGGCGCATGGAGGGACGGGAGGTGG
AGGAGGAAGAGGAGGAGGAAGAGGAGGATGACAAGAAAGAAAAAGAAGAA
GAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGAGGA
GGAGGAAGAGGAGGAGGCAGTACCAGTGACTGATCGAGCGCAGTCTGTGA
TGATGGGAGAAGGTGAGCGAGGCTGTTCTCCTTCTCCCGCGACCGATCAA
CCTTCCTCCCGCGAGTCCTCCTCCTCCGTCGATTCCTCTATTCCCGTCCG
GCTCATGAAGGCTCTGAGTGGGGAGGAAATCGATTTGAGCGTGTCGGCTC
AGTTGAAAGAAGGAGGAAGGGGGGGAGGAAACGCCTCCTCCTCCCCCCTC
CTCACGCGCGGCCTTGTGGAGGAGACCTCAGGCCCCGTCCCGTCTATTTA
TTCGTTCATCTCGCACAACACCCCCTCCCACCTCCTCACCCTGCCCCACG
GCCGCACCCGGGCCCACCGCCGCTACTCCTCCCTGTCCTCCTCCCCTGTT
GAGGGTGCTTTCTCCTCCCTCCCTCTCTCTTTTCAGTCCCTGCTCTTGTC
GAGCGGGAAGGGCGGGAGGAAGGAAGGGGAGGAAGCAGCAGCAGCTGCAG
CAGCAGCAGGCCGGCGGTACGATTATCTGGTGGGAGCTTTGGATTTAGCC
ACAGCCTTGGGAGTAGGGAGGAAGGGAAGTAGGATGATCATGGGGAAATC
CGGCCATGAAGGAGCGGTGTCGTGGGTGCATTTACGGGAGGACGAGATAA
TGGAGTTGAGTCAGTCGCAGGCCTAG back to topCoding sequence (CDS) from alignment at chr1:147776..150151+ >NO01G00550.1 ID=NO01G00550.1|Name=NO01G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=2376bp|location=Sequence derived from alignment at chr1:147776..150151+ (Nannochloropsis oceanica) ATGTTGAACCGTCGCCAGGCCTTCCGCCGCTGCAAGGTCCGCCGGAGGCA TGCCAGCTATGGTACAGCACTAGCTCCCACCCCTACAAGTAGCCCCCCCA AAATCACCGCCACGGACGCGATAAAGCGGTGTGGAAGCCAAGACAGCTAT ACCAGCACCTGCTGCAGCAACTCGAGTTGCAGTGATCGCAGCAGTGGGAG CACGAGTGACGGGCCCGAGGGCCAAAGCCAAGGTTCATCTCCTCCTGACA GCCCGCTGTCGGGAGATATGAGAATGGAGGGCATGGGCCTCGGCGGTATC ATGCTAGGCTCCCCTTCGTCCACCACCTCCTCCTCCTCGTCCTCTCCCTT GTCCTACTCTCACGATCAAGCGCGGTTGTCACCACCTCCACGCGTTCCAG GACCAGGACCATATTCCATCCTGTCGTTGCCACCCTCCCCGCTACTCCGG GACGAGGCAGAGAGGAACCCTCCGCCACCATCATCACTTCCGACCATGCA GCCACAAGATACAGAATGGCAGCAGAGACACCAGACACCTAGCAGTAGTA CCAGCAGTAGTACCAGCAGCAGCCGCAACAGCAGCAGTGGCTTCAGCAGT TGCAGTTCGAGAAGCAGCAACAGCAACAGCAGCAGTAGCAGCAGCACCAG CAGGGGAGGGGGCTCGCGCTTGGCACGATGGTGGCATCTGTTGGGTCATC CTACTTTCCTCTCTCCCCTCGCACTCTGGTCTAGCCCTGTCTACTACTGC GACCTTCCCCCACTCCGTCGCCCGCGTCGCTCGCATCGATCACCGTCCTG CCGTGCTCCTGCAGCCTGGGAGGGAGGAACAAAAAAGGACGTTCACGTGG TCGTCGATGGGACGAAGAGCGGAGCAGGAATGCCGCCCCCTGCCTTGGCT CTACCACCGCCGGCCCACTTCTCGACGCGGAGCAAGGAAGGAGCAGCAAC AGCGGCATCAGCAGCAGTAGCAGCAGCAGCAGGAGCAGCCTCAGGACGGC TGGGTTTGCCTTCCTCCTCATTTGTAACTTCGGATCGCGGCAGCTGTAGC GTCAGCTGTGCCCCGGCAGGCGCGGGGTACATGGATGCGGGATTGGACGG CAAGTGGCTTGAAGGAGAGGAGGAGGAAGATGGAGGATGGGAGGGAGGGA AAGAGGAAGGGAGGGAGGGAGGAGAGCCGGAGGAAGAACGGCCCACGTCA GCGGCGAGGAGGGAGGGAATTAAGGAGGGTGAGGTTGATGATGACGGTGA TGAGGAGGAGGAGATTGATAACATTTCCCCTCTCTCAGGGGCCGCCTCTT TTTTCTCTCCATTCACAGAGGATGAGGAGGAGGCAGAGGAGGAGGATGAG GCGGATGAGGAGGAAGAGGATCCGGCACAGGTTCGTTTTTCGGATGTGGA CCGCATTGTATTAATCCCCGCAAGATGTGATTACGACGAGGAGACGAAGG AGCTGTTGTGGTGGGCTTTGGAAGACTATGTGGGTTTCAAGAAGAGGAGC CTGAGGCTTTTGAATATGGGGAAGAAGGAGTTTGTGACGTTGGACCCGAT TGAGCTGAAGTGGGAGGAGGAGGAGAGGCGCATGGAGGGACGGGAGGTGG AGGAGGAAGAGGAGGAGGAAGAGGAGGATGACAAGAAAGAAAAAGAAGAA GAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTGAGGA GGAGGAAGAGGAGGAGGCAGTACCAGTGACTGATCGAGCGCAGTCTGTGA TGATGGGAGAAGGTGAGCGAGGCTGTTCTCCTTCTCCCGCGACCGATCAA CCTTCCTCCCGCGAGTCCTCCTCCTCCGTCGATTCCTCTATTCCCGTCCG GCTCATGAAGGCTCTGAGTGGGGAGGAAATCGATTTGAGCGTGTCGGCTC AGTTGAAAGAAGGAGGAAGGGGGGGAGGAAACGCCTCCTCCTCCCCCCTC CTCACGCGCGGCCTTGTGGAGGAGACCTCAGGCCCCGTCCCGTCTATTTA TTCGTTCATCTCGCACAACACCCCCTCCCACCTCCTCACCCTGCCCCACG GCCGCACCCGGGCCCACCGCCGCTACTCCTCCCTGTCCTCCTCCCCTGTT GAGGGTGCTTTCTCCTCCCTCCCTCTCTCTTTTCAGTCCCTGCTCTTGTC GAGCGGGAAGGGCGGGAGGAAGGAAGGGGAGGAAGCAGCAGCAGCTGCAG CAGCAGCAGGCCGGCGGTACGATTATCTGGTGGGAGCTTTGGATTTAGCC ACAGCCTTGGGAGTAGGGAGGAAGGGAAGTAGGATGATCATGGGGAAATC CGGCCATGAAGGAGCGGTGTCGTGGGTGCATTTACGGGAGGACGAGATAA TGGAGTTGAGTCAGTCGCAGGCCTAG back to top
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