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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:136221..141166 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00520.1 vs.
Match: EWM28979.1 (9-cis-epoxycarotenoid dioxygenase [Nannochloropsis gaditana]) HSP 1 Score: 251.5 bits (641), Expect = 5.200e-63 Identity = 138/225 (61.33%), Postives = 162/225 (72.00%), Query Frame = 0
Query: 281 AHLYEYTIDL----------------TSSCLLSSTRLFPPSADPRGWEFPQVDGRRAGRRTRYLYATAFNHAGEGEGFVKIDLEGGREGGREGGVGLVKVNYEEGTFGGEVIFVPREDKGGKEGGEEGGEDDGFLLTFVHSYPRNVSEFRVYDAREVEGGREGGEKGG---LVASVVLPRRVPWGFHALWVGEKELKEQQGMVRLRKGKVVKE-EGKGEGGKEEL 486
AHLYEYT+ L +SSCLL+ +RL P S DPR WEFPQ++ ++AGR++R+++AT FN GEGEGFVK+DLEG R EGG +V YEEGTFGGEVIFVPRE G +EGG E EDDG+LLTF HSYPRNVSEFRVYDAR +EGG E G++GG LVASV LPRRVPWGFHALWV + EL+ Q+ V LRKGKVV+E G KEEL
Sbjct: 19 AHLYEYTLLLPPPSSPSSSSSPSSSSSSSCLLAHSRLIPASHDPRLWEFPQINQKKAGRKSRFMFATVFNQHGEGEGFVKVDLEGER---GEGGAPYAEVKYEEGTFGGEVIFVPRE--GEREGGGEREEDDGYLLTFTHSYPRNVSEFRVYDARRMEGGGEEGKEGGREALVASVALPRRVPWGFHALWVEQNELENQRDRVVLRKGKVVEEGGGAARKAKEEL 238
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00520.1 ID=NO01G00520.1|Name=NO01G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=2555bp TCCATTGGTGTGGTGGCGTGCTGTATGTTATGGTGGCGCAAGGGAAGTGT GCTTACATTCGTGCGTTTGTGTGTATGTGTACATGTGTGAATGTGTATAT GAGGGGTTGGTTATGTTCCTTGTTTGGCAGTGCCGGCCTAACGGAGGCCG TTGGAAAATAGGTCAAAGACGATTGAGCGGGGCTCTAGCATGCACAGGAT AATCGATGGTATCACTTATCCCTATTGAGTGTGAGGGTGTGGTAAGTGAG TGTGGGTGGACGGGCTTTGGTCCCCTGAAGGACACCCCCCGCTTCTTCGT TCAGAACGGTGTGCGAGATGATGCGAGTCGCTGATTTTGACATGCTGAAA AGAGCTTGGACCGCGTGCATGACGTGGCATTATTACTACCCGATGATGAG GAGCAGAGGCGCGTGGTGCTGCATTGGTTTTCAAGTGTAATGGGCGTGTC AACTTGTGCAAGCAAGCAAGCAAGCAAGCATCATCCGTCCGGGTAGGAGG TCCCCCCTCATTCCCTCACCCTCGTCCTCCTCCATTCCACCTCAACGCAT CCAGTACAGGCAAAAAGATGGGGAGTATATGGCGCCTGGTGCGGGATGGT CTCGGGACTCTCTTGGCCCTGACGGAATCAGGTGTCTTTTGGATGCAAGG GTCAGAGTTGGTACATTTTTTGAAGCGGGGAAAGAGTGGGAGGAGGTAGA GGAGGAAAAGCAATGTGTGTGAGGGCTGAGAAAAGGGAAGGGAGCTGGAA AGGGAAAGGGGGGAAAATACATGTTCGTATTTCGCATTCATATACATTGT CGCACCCCTTTTAAACCCCTCTTTTGTGTGTAGAACCCACGCGGTGAGGA TAATCGCTTTTTGTGGGGTAATTACGCACCTGTGCAAGGCGACTTGTTCG TGCCCAACCTGCCCGTGACCACCGGAAAACTCCCTCCAGAAGTGACGGGC TTGTTCGCACGCAATGGGCCGAACCCAGCCTATATTTCAGCGGGCTATCA TTGGTTTGACGGCTCGGGTTACATACACTCCTTGCGCTTGGACGCTGCCA CGCAGACCGCGAATTACTCGGGTCAGTTCGTCCAGACGCCCATCCTCATG CAAGAGCGGGCTGCCGGGCGGGCGCTGGCAAATAAGTTCGGGGACCTGAG AGGCATCGGTGCATTAATACTCACGGCCGTTGAAAGCATTCGGAAACTTG TGGGGATCATCGACGCCAGCGATGGCATGTACACCGCCAACACAGCCCTC CTCTGGCACCATCACCAGCTTTTCGCCCTCCACGAAGGAGACCAGCCGCA CCTCCTCCACGTGTCTCCTGAGGGGAAGATACGCACGCAGGGGCGGGTCC ACAAAGCGGGAGAAAAAGGGAAGTGGTTCACTGCCCACCCCAAGATCGAC CCGGAGAGCAAGAAGCTCTATGCCTTCGGCTATGACCTGGCCTCGCCACC CTTCCTCTCCTTCTACCGCATGGACGCCACAGGCACGGAGGAGGCGGTCA TTCCCGTGGGATTCAGCAAGCCCTGCATGACGCACGACTTTGCCGTTACG CATCGCCACGCCGTCTTTTTGGAGGGGGCGTTGTACGTGGCGCCGGAGGA CCTCATCACCCACCCTCGTTCCGCTTCCCTCTTCCGTTTCGATCCTCTCA AACCCACCCGCCTGGCCGTCCTCCCCCTCGACGCCTCCACGCCCGAGGAG GCCGTGTGGATCGACAAAATGTGCGACGGCTCCCCCATCCCTGCCTCCTT CGTCTTTCACTTCGGCAATGCCTGGGAGGAAGAGGGGTCGGAAAAAGGCC GACATGGACACAGACTCATCAAGATGGAGACGCACCGCTACGAGCACTTT GAATTGGATTTTGAGGGCACCATCGAGAAGCCTAACGCGACCGAGAAACA TCATGCCTGGACCCGAGATGAGCTAGACGCACGAGTCGCCCACCTCTATG AATATACGATCGACCTGACGTCTTCCTGCCTCCTCTCCTCCACCCGGCTC TTCCCTCCCTCTGCCGACCCGCGGGGATGGGAGTTCCCGCAGGTGGATGG ACGGAGGGCGGGCAGGCGGACGAGGTACTTGTATGCCACCGCTTTTAATC ACGCAGGAGAAGGGGAGGGTTTCGTGAAAATCGACCTGGAGGGAGGGAGG GAGGGAGGGAGGGAGGGAGGGGTGGGGCTGGTGAAGGTCAACTACGAGGA GGGCACCTTCGGGGGGGAGGTGATCTTTGTGCCGAGGGAGGACAAGGGCG GGAAGGAGGGAGGGGAGGAGGGCGGGGAGGACGACGGGTTTTTGCTGACG TTTGTGCATTCTTACCCGAGGAACGTGAGCGAATTTCGGGTGTACGATGC GAGGGAGGTGGAGGGAGGGAGGGAGGGTGGGGAGAAGGGAGGGCTGGTAG CGTCCGTGGTGTTGCCCCGACGGGTGCCTTGGGGATTTCATGCTCTGTGG GTGGGGGAGAAGGAGCTGAAGGAGCAGCAGGGGATGGTGAGGTTGAGGAA GGGGAAGGTGGTGAAGGAGGAGGGAAAGGGGGAGGGAGGGAAAGAGGAGT TGTAA back to topprotein sequence of NO01G00520.1 >NO01G00520.1-protein ID=NO01G00520.1-protein|Name=NO01G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp MQERAAGRALANKFGDLRGIGALILTAVESIRKLVGIIDASDGMYTANTA LLWHHHQLFALHEGDQPHLLHVSPEGKIRTQGRVHKAGEKGKWFTAHPKI DPESKKLYAFGYDLASPPFLSFYRMDATGTEEAVIPVGFSKPCMTHDFAV THRHAVFLEGALYVAPEDLITHPRSASLFRFDPLKPTRLAVLPLDASTPE EAVWIDKMCDGSPIPASFVFHFGNAWEEEGSEKGRHGHRLIKMETHRYEH FELDFEGTIEKPNATEKHHAWTRDELDARVAHLYEYTIDLTSSCLLSSTR LFPPSADPRGWEFPQVDGRRAGRRTRYLYATAFNHAGEGEGFVKIDLEGG REGGREGGVGLVKVNYEEGTFGGEVIFVPREDKGGKEGGEEGGEDDGFLL TFVHSYPRNVSEFRVYDAREVEGGREGGEKGGLVASVVLPRRVPWGFHAL WVGEKELKEQQGMVRLRKGKVVKEEGKGEGGKEEL* back to topmRNA from alignment at chr1:136221..141166+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00520.1 ID=NO01G00520.1|Name=NO01G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=4946bp|location=Sequence derived from alignment at chr1:136221..141166+ (Nannochloropsis oceanica) TCCATTGGTGTGGTGGCGTGCTGTATGTTATGGTGGCGCAAGGGAAGTGT
GCTTACATTCGTGCGTTTGTGTGTATGTGTACATGTGTGAATGTGTATAT
GAGGGGTTGGTTATGTTCCTTGTTTGGCAGTGCCGGCCTAACGGAGGCCG
TTGGAAAATAGGTCAAAGACGATTGAGCGGGGCTCTAGCATGCACAGGAT
AATCGATGGTATCACTTATCCCTATTGAGTGTGAGGGTGTGGTAAGTGAG
TGTGGGTGGACGGGCTTTGGTCCCCTGAAGGACACCCCCCGCTTCTTCGT
TCAGAACGGTGTGCGAGATGATGCGAGTCGCTGATTTTGACATGCTGAAA
AGAGCTTGGACCGCGTGCATGACGTGGCATTATTACTACCCGATGATGAG
GAGCAGAGGCGCGTGGTGCTGCATTGGTTTTCAAGTGTAATGGGCGTGTC
AACTTGTGCAAGCAAGCAAGCAAGCAAGCATCATCCGTCCGGGTAGGAGG
TCCCCCCTCATTCCCTCACCCTCGTCCTCCTCCATTCCACCTCAACGCAT
CCAGTACAGGCAAAAAGATGGGGAGTATATGGCGCCTGGTGCGGGATGGT
CTCGGGACTCTCTTGGCCCTGACGGAATCAGGTGTCTTTTGGATGCAAGG
GTCAGAGTTGGTACATTTTTTGAAGCGGGGAAAGAGTGGGAGGAGGTAGA
GGAGGAAAAGCAATGTGTGTGAGGGCTGAGAAAAGGGAAGGGAGCTGGAA
AGGGAAAGGGGGGAAAATACATGTTCGTATTTCGCATTCATATACATTGT
CGCACCCCTTTTAAACCCCTCTTTTGTGTGTAGAACCCACGCGGTGAGGA
TAATCGCTTTTTGTGGGGTAATTACGCACCTGTGCAAGGCGACTTGTTCG
TGCCCAACCTGCCCGTGACCACCGGAAAACTCCCTCCAGAAGTGACGGGC
TTGTTCGCACGCAATGGGCCGAACCCAGCCTATATTTCAGCGGGCTATCA
TTGGTAAGGGAGGGATGGAGGAAGGGTGGGGGAAGGGAGGGAGGGCGGGA
GGGGGGAACAAACGCCGAAGAAGTTGCATGTTGCTTTCCTCCGCACTTTC
CCAGTCGTCATTTCCGTCTCATTCTCTACGTCTTTTGCAGGTTTGACGGC
TCGGGTTACATACACTCCTTGCGCTTGGACGCTGCCACGCAGACCGCGAA
TTACTCGGGTCAGTTCGTCCAGACGCCCATCCTCATGGTTAGGAGGGAGG
GAGGGAGGGAGGCGGGAAAGGGAGAGGAAAAAGGAGGGAAAGATAGAAGG
AAACAAGGTAGAAGGGAGAGAAGGAGAAACAGATATATAGAGGTGCATTA
GTTCCTCTCAATCAGGTGAGGAGTGAGGCTGGAGGGAGTTAGGGTACAAG
CAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTAGAAAGATTTGG
AGGGATGGACATGCCAGAGAGCACGCACTGCGTTGCAATGCCCAACACCT
GTCCTTACACCTCCGTCCTGCGAAGGGCGGGGGTGTGGAGGCGTGGGTCG
TTGCGGCTCTATATCAGTGCCAGAGCAACCCTGGGTAGTGTGATGTAATA
CGTCCTCAACTTTTGATAGGCTTAGGGCGACCACCGTGCTACCCACATTC
TCAATGTGTTCATGTATGTACACGTGTATATATATATATGTATGTATGTA
TATGTATATATACATCTCTATATCTCTATATCTATATATCTATATCTAAT
ATCTAATATATATTCTAATATATTTTAATTTATACATATTTATACATCCA
TCTATCTATCTATATGTATCTACATCGATGTGATGCGCCCTACAGTGTGT
GTATATGGAAAGAGGGAGGGAAAGCGTGGCAGATGATGGGTCCAAGGGAC
GACAAGAACTGCCAGGCTTTGACATAGCCCTCCCTCCCTGCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCTTCCC
TCCCTCCTTCCCTCCCTCCCTTCTTCCCTCCCTCCTTCCCTGCCAGGCTT
TGACATGGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCAGCAAG
AGCGGGCTGCCGGGCGGGCGCTGGCAAATAAGTTCGGGGACCTGAGAGGC
ATCGGTGCATTAATACTCACGGCCGTTGAAAGCATTCGGAAACTTGTGGG
GATCATCGACGCCAGCGATGTAAGGAGGGAGGGAGGGAGGAAGGGAAGGA
AGGAGGGAGGGAGGGAGGGAAGGAAGGAAGGATTAACGGAAGGAGGAGTC
AACTGCTATTCGGATTCAATGTCTCGCCCCCTCTATCCCTCCCTCACTTG
CCTCCCTCACCACCCTCATCTCTCCCTCCCTCCCCTTCTCCCTCCCTCCC
CACCCATCCCCCTCCCTCCCTCCCTTCCTCTCTCCTTCCAGGGCATGTAC
ACCGCCAACACAGCCCTCCTCTGGCACCATCACCAGCTTTTCGCCCTCCA
CGAAGGAGACCAGCCGCACCTCCTCCACGTGTCTCCTGAGGGGAAGATAC
GCACGCAGGGGCGGGTCCACAAAGCGGGAGAAAAAGGGAAGTGGTTCACT
GCCCACCCCAAGGTAGGTAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAAGGTGGGGTTATAGAGACGTTAAAT
GTATCATCACCTCTTCTTCCTATCCCCCCTCCTCCCCCCACTCCCTGAAG
ATCGACCCGGAGAGCAAGAAGCTCTATGCCTTCGGCTATGACCTGGCCTC
GCCACCCTTCCTCTCCTTCTACCGCATGGACGCCACAGGTAAGCCCCTCC
CTCCCTCCCTCCCTCCCTTCCTTCCTTTTTTATTTCTGATGCCTGCTCAT
TCCCCCCTCACTAGGCACGGAGGAGGCGGTCATTCCCGTGGGATTCAGCA
AGCCCTGCATGACGCACGACTTTGCCGTTACGCATCGCCACGCCGTCTTT
TTGGAGGGGGCGTTGTACGTGGCGCCGGAGGTAGGGCGGGAGGAAGGGAG
GGAGAAAAGACCGGGGGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAT
GGAGGGCGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGAGGGCGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGACCGGGG
GGAGGGGGAGGGAGGGAGAGAGGGTGGGAGGGAGGGAGGGAGGTGCATGT
TCCCATCCCAATCCCCATTTGACGCAACAGTATCCTTATGAATGCATGTC
CCTCCGTCCCTCCTTCCCTCCCTCCATCCCTTAGGACCTCATCACCCACC
CTCGTTCCGCTTCCCTCTTCCGTTTCGATCCTCTCAAACCCACCCGCCTG
GCCGTCCTCCCCCTCGACGCCTCCACGCCCGAGGAGGCCGTGTGGATCGA
CAAAGTACGAGGCCCGTGCCCTCTCTCCTTATACCCCCCCTCCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTCAACCCTCCCTTTCCTTAACCTCAACGGGCTGTTCCCTC
CCTCCCTCCCTCCCTCCTCTCTTCCTAGATGTGCGACGGCTCCCCCATCC
CTGCCTCCTTCGTCTTTCACTTCGGCAATGCCTGGGAGGAAGAGGGGTCG
GAAAAAGGCCGACATGGACACAGACTCATCAAGATGGAGACGCACCGGTA
GGGAGGGAGGGAGGGAGTGGGTTTCATAGCAGTACACAAATCGCACGCAC
GTACTCAGGCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTTCACTTTAATCCAAGCTACGAGCACTTTGAATTGGATTTTG
AGGGCACCATCGAGAAGCCTAACGCGACCGAGAAACATCATGCCTGGACC
CGAGATGAGCTAGACGCACGAGGTGAGGGGAGGGAGGAAGGCGAGGGAGG
GGAGGAATAGAGTGTGAGTGTGCTGGGAGAGGTAGAATAGAGGTAGGAAG
GAAGGGAGGAAGGGAGGAAGGGGGAAAGGACGGAAGGACGGAAGGAAGGA
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGTGTCTTAGGGGAATA
ATGCACACCCCCTATAAAGGTCCATCACGATTGCGACTCCCTCCGTCCCT
CCGCCCCTCCGACCCCCCCTCCACAGTCGCCCACCTCTATGAATATACGA
TCGACCTGACGTCTTCCTGCCTCCTCTCCTCCACCCGGCTCTTCCCTCCC
TCTGCCGACCCGCGGGGATGGGAGTTCCCGCAGGTGGATGGACGGAGGGC
GGGCAGGCGGACGAGGTACTTGTATGCCACCGCTTTTAATCACGCAGGAG
AAGGGGAGGGTTTCGTGAAAATCGACCTGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGGTGGGGCTGGTGAAGGTCAACTACGAGGAGGGCACCTT
CGGGGGGGAGGTGATCTTTGTGCCGAGGGAGGACAAGGGCGGGAAGGAGG
GAGGGGAGGAGGGCGGGGAGGACGACGGGTTTTTGCTGACGTTTGTGCAT
TCTTACCCGAGGAACGTGAGCGAATTTCGGGTGTACGATGCGAGGGAGGT
GGAGGGAGGGAGGGAGGGTGGGGAGAAGGGAGGGCTGGTAGCGTCCGTGG
TGTTGCCCCGACGGGTGCCTTGGGGATTTCATGCTCTGTGGGTGGGGGAG
AAGGAGCTGAAGGAGCAGCAGGGGATGGTGAGGTTGAGGAAGGGGAAGGT
GGTGAAGGAGGAGGGAAAGGGGGAGGGAGGGAAAGAGGAGTTGTAA back to topCoding sequence (CDS) from alignment at chr1:136221..141166+ >NO01G00520.1 ID=NO01G00520.1|Name=NO01G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr1:136221..141166+ (Nannochloropsis oceanica) ATGCAAGAGCGGGCTGCCGGGCGGGCGCTGGCAAATAAGTTCGGGGACCT GAGAGGCATCGGTGCATTAATACTCACGGCCGTTGAAAGCATTCGGAAAC TTGTGGGGATCATCGACGCCAGCGATGGCATGTACACCGCCAACACAGCC CTCCTCTGGCACCATCACCAGCTTTTCGCCCTCCACGAAGGAGACCAGCC GCACCTCCTCCACGTGTCTCCTGAGGGGAAGATACGCACGCAGGGGCGGG TCCACAAAGCGGGAGAAAAAGGGAAGTGGTTCACTGCCCACCCCAAGATC GACCCGGAGAGCAAGAAGCTCTATGCCTTCGGCTATGACCTGGCCTCGCC ACCCTTCCTCTCCTTCTACCGCATGGACGCCACAGGCACGGAGGAGGCGG TCATTCCCGTGGGATTCAGCAAGCCCTGCATGACGCACGACTTTGCCGTT ACGCATCGCCACGCCGTCTTTTTGGAGGGGGCGTTGTACGTGGCGCCGGA GGACCTCATCACCCACCCTCGTTCCGCTTCCCTCTTCCGTTTCGATCCTC TCAAACCCACCCGCCTGGCCGTCCTCCCCCTCGACGCCTCCACGCCCGAG GAGGCCGTGTGGATCGACAAAATGTGCGACGGCTCCCCCATCCCTGCCTC CTTCGTCTTTCACTTCGGCAATGCCTGGGAGGAAGAGGGGTCGGAAAAAG GCCGACATGGACACAGACTCATCAAGATGGAGACGCACCGCTACGAGCAC TTTGAATTGGATTTTGAGGGCACCATCGAGAAGCCTAACGCGACCGAGAA ACATCATGCCTGGACCCGAGATGAGCTAGACGCACGAGTCGCCCACCTCT ATGAATATACGATCGACCTGACGTCTTCCTGCCTCCTCTCCTCCACCCGG CTCTTCCCTCCCTCTGCCGACCCGCGGGGATGGGAGTTCCCGCAGGTGGA TGGACGGAGGGCGGGCAGGCGGACGAGGTACTTGTATGCCACCGCTTTTA ATCACGCAGGAGAAGGGGAGGGTTTCGTGAAAATCGACCTGGAGGGAGGG AGGGAGGGAGGGAGGGAGGGAGGGGTGGGGCTGGTGAAGGTCAACTACGA GGAGGGCACCTTCGGGGGGGAGGTGATCTTTGTGCCGAGGGAGGACAAGG GCGGGAAGGAGGGAGGGGAGGAGGGCGGGGAGGACGACGGGTTTTTGCTG ACGTTTGTGCATTCTTACCCGAGGAACGTGAGCGAATTTCGGGTGTACGA TGCGAGGGAGGTGGAGGGAGGGAGGGAGGGTGGGGAGAAGGGAGGGCTGG TAGCGTCCGTGGTGTTGCCCCGACGGGTGCCTTGGGGATTTCATGCTCTG TGGGTGGGGGAGAAGGAGCTGAAGGAGCAGCAGGGGATGGTGAGGTTGAG GAAGGGGAAGGTGGTGAAGGAGGAGGGAAAGGGGGAGGGAGGGAAAGAGG AGTTGTAA back to top
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