NO01G00480.1, NO01G00480.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G00480.1
Unique Name	NO01G00480.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2158
Alignment location	chr1:127803..130266 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:127803..130266 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO01G00480.1 vs.
Match: EWM28978.1 (caax alpha [Nannochloropsis gaditana])

HSP 1 Score: 415.2 bits (1066), Expect = 2.100e-112
Identity = 206/318 (64.78%), Postives = 236/318 (74.21%), Query Frame = 0

Query:    1 MSVSSPTPYVPLSRRPEWHDFTPLSQNDPPVSSVVVPIAYPDEYRDATAYMRAVLATGERSRRVQALAGEVIEMNAAHYTAWWLRRRCLECLVAEAQAGGKGWEKGGDEAVEALYDEELAYARQMADENPKNYQVWFHRQAIVAQTQDPSHELEAVARTLKGDGKNYHAWAYRQWLLQTFQTGWEAEKQFVDELLEEDPRNNSAWNQRWFIVHAHELSPHHLMREGGEEGGNTEAKAVAAAAIRDREMAYAWTAIREEG----GREGGRG----LGENESAWAYLRGYLKETNFKAVGWKERLLALAEEGKEGGKEGG 311
            M  S    YVP S R EW D TP+ Q+D P SS+VVPI YPDEYRDAT YMRA L TGERSRRV  LAGEVIEMNAAHYTAWWLRRRCLE +VAE  A     +K  DEAVE LYD ELA+A +++DENPKNYQVWFHRQ I+A+T+DP+ ELE   R L+ D KNYH WAYRQW+L+TFQ GWE E  FVD LL+ED RNNSAWNQRWF+VH HELSP+HL REGG  GG  +A       IR+REMAYAW ++ EEG    G  GG G    LG+NESAW YLRGYL+ET ++A GW+ERL+   EEG  GG+EGG
Sbjct:    1 MPTSPQAMYVPFSHRLEWQDVTPIPQDDLPASSLVVPIDYPDEYRDATEYMRAALVTGERSRRVHGLAGEVIEMNAAHYTAWWLRRRCLEAMVAETTAQDNAGDKEMDEAVEELYDAELAFALRISDENPKNYQVWFHRQTIIAETEDPAGELEISTRALRKDAKNYHVWAYRQWILKTFQAGWEEEMAFVDTLLKEDRRNNSAWNQRWFVVHTHELSPYHLEREGGRGGGKADA-------IREREMAYAWDSVLEEGAGLAGGGGGEGKEGRLGDNESAWMYLRGYLRETGYRASGWRERLVNAVEEG--GGREGG 309

The following BLAST results are available for this feature:

BLAST of NO01G00480.1 vs.

BLAST of NO01G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28978.1	2.100e-112	64.78	caax alpha [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G00480	NO01G00480	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00480.1	NO01G00480.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G00480.1.cds1	NO01G00480.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00480.1.cds2	NO01G00480.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G00480.1.cds3	NO01G00480.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:127803..130266-
coding sequence from alignment at chr1:127803..130266-

mRNA sequence

>NO01G00480.1 ID=NO01G00480.1|Name=NO01G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp
GTCGGCCATGCTGAGTGCTGCTGTGCGGGTGGAGATGGGGTGTGGGGTGG
ATGGGGGAGTGAAGGATAGGTAGGGAGGTTCAAACCACGGCGGACATGGA
CGATCGATAGAAGTAATGCGCCGCGTGCCCTGAAGCTCGCAACGCGCCCT
AAAGCTTGTCGCATTTACAGCAGGATTATTGAGGGTATTTGGGTATTTAG
AGTGTGCGCACAGTTAATGTCGGGTCATCATGAGGGCTTGGGACGTCCTA
GGGGAGGTCGTGGCTTCTGCCCCGGTTCTGACCCTCAAACTATTGGCTCC
CCCACCACCGCCGTGACGCCAGGGTCTTGTACACCTACAAATGTTGAGTG
TGCTGTGAGTGGTTTTGCTTGTGTGGGGCGTGATTTTGTCAAGCGGGGCC
ATCGCCGCATATCTCGCTTCAACTGCTGCTTCTGTTGCTCACGGCATTCC
TTCCTTCGTGCCCTCGCTCCCTCAAAAGCACCCTCTTAACACGTTCAACT
TACCCTCTACGCATCTCCATATCCGCAAACATGCGAAACACGCGTGCGCG
GGGCCATGGGTTTGAAGATGTGTTTCGAGAGCCAGTTTCGTCATTCCTCC
CTGCAGCAGAAGCCTCCCCTCCCTTTGCATTGCTTGTTCCTCTCCAGCAG
TGTTGAAAAGAGATTCGCCTCCCTTAAGAACGCCCGTTCACGTTCATCAT
CTGCTTATGCCCTCCTTCTAACCACCCTCTGTTGCTTTCCTCAATACACA
GGAACCCCACATGTCCGTCTCCTCCCCCACGCCCTACGTCCCCCTCTCCC
GTCGGCCCGAATGGCACGACTTCACGCCCCTCTCTCAAAACGACCCTCCT
GTCTCTTCCGTCGTTGTTCCAATCGCCTACCCCGACGAATATCGTGATGC
CACCGCCTACATGCGTGCTGTCCTGGCGACGGGGGAACGCTCTCGACGTG
TTCAAGCCTTGGCTGGGGAAGTGATCGAGATGAATGCCGCGCATTACACG
GCCTGGTGGCTCCGACGACGTTGTTTGGAGTGTCTGGTGGCGGAAGCCCA
GGCAGGGGGAAAGGGATGGGAGAAGGGGGGGGACGAGGCTGTGGAAGCAT
TATATGATGAGGAGCTGGCCTATGCCAGGCAGATGGCGGACGAGAACCCC
AAGAACTATCAGGTATGGTTCCATCGGCAAGCCATCGTAGCCCAGACACA
AGACCCTTCACACGAGCTCGAGGCGGTGGCACGTACTCTGAAGGGGGACG
GGAAGAACTACCACGCCTGGGCCTACCGCCAGTGGTTGCTGCAGACGTTT
CAAACGGGCTGGGAGGCCGAGAAGCAATTCGTGGACGAGCTGCTCGAGGA
GGACCCACGCAACAACAGCGCCTGGAACCAACGCTGGTTCATAGTACATG
CCCACGAGCTCTCCCCCCACCACCTTATGAGGGAGGGCGGGGAGGAGGGA
GGAAATACAGAAGCAAAAGCAGTGGCAGCAGCAGCGATCCGTGATCGAGA
GATGGCGTATGCCTGGACCGCTATCCGGGAGGAAGGAGGGAGGGAGGGCG
GGCGAGGGCTGGGGGAGAATGAAAGTGCATGGGCTTACCTTAGGGGATAC
TTAAAAGAGACAAATTTTAAGGCGGTAGGTTGGAAGGAAAGGCTTTTGGC
GTTGGCTGAGGAAGGGAAGGAGGGAGGGAAGGAGGGAGGAAGTGTGTGTG
TGCCGTTGATGGCATTAGCGGTTGAGGTGCACGAGGCGGAGGGCGACGAC
GCGAGTTTGGAGGAGGCGGTGGTATTGGTGGAAAGCCTAGGAGAGCGGTG
GGACAGGACGCGGCGGGGGTACTGGCTGAAGAGTGTGTTGGGGAGGATCA
ATCGAAAGTTGCTGCGGGAGATCGGAACGCCGGTCGGGAGGGGGTGAGGG
AAGGGGGAGGGAGGGTGGGAGGGGGATGAGAAGCGCAATTGGGGGACTCG
GGTAACGAAGGAGGAAAAGGGGCTGAGAAGCCAGAAAGAGGTACGAGAAA
CAGCCTGGGGGGGAAGAGGGAGACGACGAATTGTGCGAGAAGGAGACATG
GGTTGGGCAGGTATAATATGTAGCCGGAGAGAGGGGAGAAGCAGGAGGAG
TGTACCGCCCGAGAAGAGAAGAGGATCACCATGAGCACGGAGATAGAGAG
AGGGGGGG

protein sequence of NO01G00480.1

>NO01G00480.1-protein ID=NO01G00480.1-protein|Name=NO01G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MSVSSPTPYVPLSRRPEWHDFTPLSQNDPPVSSVVVPIAYPDEYRDATAY
MRAVLATGERSRRVQALAGEVIEMNAAHYTAWWLRRRCLECLVAEAQAGG
KGWEKGGDEAVEALYDEELAYARQMADENPKNYQVWFHRQAIVAQTQDPS
HELEAVARTLKGDGKNYHAWAYRQWLLQTFQTGWEAEKQFVDELLEEDPR
NNSAWNQRWFIVHAHELSPHHLMREGGEEGGNTEAKAVAAAAIRDREMAY
AWTAIREEGGREGGRGLGENESAWAYLRGYLKETNFKAVGWKERLLALAE
EGKEGGKEGGSVCVPLMALAVEVHEAEGDDASLEEAVVLVESLGERWDRT
RRGYWLKSVLGRINRKLLREIGTPVGRG*

mRNA from alignment at chr1:127803..130266-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G00480.1 ID=NO01G00480.1|Name=NO01G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2464bp|location=Sequence derived from alignment at chr1:127803..130266- (Nannochloropsis oceanica)
GTCGGCCATGCTGAGTGCTGCTGTGCGGGTGGAGATGGGGTGTGGGGTGG
ATGGGGGAGTGAAGGATAGGTAGGGAGGTTCAAACCACGGCGGACATGGA
CGATCGATAGAAGTAATGCGCCGCGTGCCCTGAAGCTCGCAACGCGCCCT
AAAGCTTGTCGCATTTACAGCAGGATTATTGAGGGTATTTGGGTATTTAG
AGTGTGCGCACAGTTAATGTCGGGTCATCATGAGGGCTTGGGACGTCCTA
GGGGAGGTCGTGGCTTCTGCCCCGGTTCTGACCCTCAAACTATTGGCTCC
CCCACCACCGCCGTGACGCCAGGGTCTTGTACACCTACAAATGTTGAGTG
TGCTGTGAGTGGTTTTGCTTGTGTGGGGCGTGATTTTGTCAAGCGGGGCC
ATCGCCGCATATCTCGCTTCAACTGCTGCTTCTGTTGCTCACGGCATTCC
TTCCTTCGTGCCCTCGCTCCCTCAAAAGCACCCTCTTAACACGTTCAACT
TACCCTCTACGCATCTCCATATCCGCAAACATGCGAAACACGCGTGCGCG
GGGCCATGGGTTTGAAGATGTGTTTCGAGAGCCAGTTTCGTCATTCCTCC
CTGCAGCAGAAGCCTCCCCTCCCTTTGCATTGCTTGTTCCTCTCCAGCAG
TGTTGAAAAGAGATTCGCCTCCCTTAAGAACGCCCGTTCACGTTCATCAT
CTGCTTATGCCCTCCTTCTAACCACCCTCTGTTGCTTTCCTCAATACACA
GGAACCCCACATGTCCGTCTCCTCCCCCACGCCCTACGTCCCCCTCTCCC
GTCGGCCCGAATGGCACGACTTCACGCCCCTCTCTCAAAACGACCCTCCT
GTCTCTTCCGTCGTTGTTCCAATCGCCTACCCCGACGAATATCGTGATGC
CACCGCCTACATGCGTGCTGTCCTGGCGACGGGGGAACGCTCTCGACGTG
TTCAAGCCTTGGCTGGGGAAGTGATCGAGATGAATGCCGCGCATTACACG
GCCTGGTGGCTCCGACGACGTTGTTTGGAGTGTCTGGTGGCGGAAGCCCA
GGCAGGGGGAAAGGGATGGGAGAAGGGGGGGGACGAGGCTGTGGAAGCAT
TATATGATGAGGAGCTGGCCTATGCCAGGCAGATGGCGGACGAGAACCCC
AAGAACTATCAGGTGGGTAGGTGGGTGGGTGGATGGATGATGGATTTCTG
AGCCAGACTCACACTCCCATGGTTTACTCCTTGCTGAGTGTGTAAGAGGG
ACGGTCGGGCATAAATCGCCTAAGCTCTTGCTTCTTTTCCTCCCTCTTTC
CCTCCCTCCCCTTGGTCCTAGGTATGGTTCCATCGGCAAGCCATCGTAGC
CCAGACACAAGACCCTTCACACGAGCTCGAGGCGGTGGCACGTACTCTGA
AGGGGGACGGGAAGAACTACCACGCCTGGGCCTACCGCCAGTGGTTGCTG
CAGACGTTTCAAACGGGCTGGGAGGCCGAGAAGCAATTCGTGGACGAGCT
GCTCGAGGAGGACCCACGGTAAGTGAGGGAAGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGGAGAGGAGGGGAGAGAAAGAAGCAGAAAATCTGTCGGAG
AAGGGATCTTCTATTCTATACAGCTTTTCTTTCTCCCTCCCTCCTTCCCT
CCCTCCCTTCCCCAGCAACAACAGCGCCTGGAACCAACGCTGGTTCATAG
TACATGCCCACGAGCTCTCCCCCCACCACCTTATGAGGGAGGGCGGGGAG
GAGGGAGGAAATACAGAAGCAAAAGCAGTGGCAGCAGCAGCGATCCGTGA
TCGAGAGATGGCGTATGCCTGGACCGCTATCCGGGAGGAAGGAGGGAGGG
AGGGCGGGCGAGGGCTGGGGGAGAATGAAAGTGCATGGGCTTACCTTAGG
GGATACTTAAAAGAGACAAATTTTAAGGCGGTAGGTTGGAAGGAAAGGCT
TTTGGCGTTGGCTGAGGAAGGGAAGGAGGGAGGGAAGGAGGGAGGAAGTG
TGTGTGTGCCGTTGATGGCATTAGCGGTTGAGGTGCACGAGGCGGAGGGC
GACGACGCGAGTTTGGAGGAGGCGGTGGTATTGGTGGAAAGCCTAGGAGA
GCGGTGGGACAGGACGCGGCGGGGGTACTGGCTGAAGAGTGTGTTGGGGA
GGATCAATCGAAAGTTGCTGCGGGAGATCGGAACGCCGGTCGGGAGGGGG
TGAGGGAAGGGGGAGGGAGGGTGGGAGGGGGATGAGAAGCGCAATTGGGG
GACTCGGGTAACGAAGGAGGAAAAGGGGCTGAGAAGCCAGAAAGAGGTAC
GAGAAACAGCCTGGGGGGGAAGAGGGAGACGACGAATTGTGCGAGAAGGA
GACATGGGTTGGGCAGGTATAATATGTAGCCGGAGAGAGGGGAGAAGCAG
GAGGAGTGTACCGCCCGAGAAGAGAAGAGGATCACCATGAGCACGGAGAT
AGAGAGAGGGGGGG

Coding sequence (CDS) from alignment at chr1:127803..130266-

>NO01G00480.1 ID=NO01G00480.1|Name=NO01G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr1:127803..130266- (Nannochloropsis oceanica)
ATGTCCGTCTCCTCCCCCACGCCCTACGTCCCCCTCTCCCGTCGGCCCGA
ATGGCACGACTTCACGCCCCTCTCTCAAAACGACCCTCCTGTCTCTTCCG
TCGTTGTTCCAATCGCCTACCCCGACGAATATCGTGATGCCACCGCCTAC
ATGCGTGCTGTCCTGGCGACGGGGGAACGCTCTCGACGTGTTCAAGCCTT
GGCTGGGGAAGTGATCGAGATGAATGCCGCGCATTACACGGCCTGGTGGC
TCCGACGACGTTGTTTGGAGTGTCTGGTGGCGGAAGCCCAGGCAGGGGGA
AAGGGATGGGAGAAGGGGGGGGACGAGGCTGTGGAAGCATTATATGATGA
GGAGCTGGCCTATGCCAGGCAGATGGCGGACGAGAACCCCAAGAACTATC
AGGTATGGTTCCATCGGCAAGCCATCGTAGCCCAGACACAAGACCCTTCA
CACGAGCTCGAGGCGGTGGCACGTACTCTGAAGGGGGACGGGAAGAACTA
CCACGCCTGGGCCTACCGCCAGTGGTTGCTGCAGACGTTTCAAACGGGCT
GGGAGGCCGAGAAGCAATTCGTGGACGAGCTGCTCGAGGAGGACCCACGC
AACAACAGCGCCTGGAACCAACGCTGGTTCATAGTACATGCCCACGAGCT
CTCCCCCCACCACCTTATGAGGGAGGGCGGGGAGGAGGGAGGAAATACAG
AAGCAAAAGCAGTGGCAGCAGCAGCGATCCGTGATCGAGAGATGGCGTAT
GCCTGGACCGCTATCCGGGAGGAAGGAGGGAGGGAGGGCGGGCGAGGGCT
GGGGGAGAATGAAAGTGCATGGGCTTACCTTAGGGGATACTTAAAAGAGA
CAAATTTTAAGGCGGTAGGTTGGAAGGAAAGGCTTTTGGCGTTGGCTGAG
GAAGGGAAGGAGGGAGGGAAGGAGGGAGGAAGTGTGTGTGTGCCGTTGAT
GGCATTAGCGGTTGAGGTGCACGAGGCGGAGGGCGACGACGCGAGTTTGG
AGGAGGCGGTGGTATTGGTGGAAAGCCTAGGAGAGCGGTGGGACAGGACG
CGGCGGGGGTACTGGCTGAAGAGTGTGTTGGGGAGGATCAATCGAAAGTT
GCTGCGGGAGATCGGAACGCCGGTCGGGAGGGGGTGA

Synonyms

Publications