NO01G00460.1, NO01G00460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00460.1
Unique NameNO01G00460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr1:124465..125418 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:124465..125418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00460.1 vs.
Match: EWM28973.1 (lipoate-protein ligase b [Nannochloropsis gaditana])

HSP 1 Score: 376.7 bits (966), Expect = 7.100e-101
Identity = 184/266 (69.17%), Postives = 217/266 (81.58%), Query Frame = 0 
Query:   44 FSSASPSSPSASPASRLPP--TFDPLASFHRDPVVLHDWSDRLTSYQDAWDIQHRLVEAKLASLSSTVTSSSSSMNSVQASPDRLLLLQHPPTYTLGTGSTPTNLLFDPSDPSTAPAALFKTERGGEATWHGPGQLVAYPLLDLKHYRQDLHWYLRALEEVVIQTLAPLGIEGGREEGLTGVWVEGHKVAAVGVKVKRWVTMHGVALNVDPSMDYFKHIVPCGIGDRPVGSVMNFWKGESGKEVITVEEVALLMKRAFEDVFGVVL 308
            F +A P+ P   P++RL    +F PL S  RDPV+LHDWSDRLT YQDAWD QHRLV+ KLASL+ +        +  +A+ D LLL+QHPPTYTLGTGSTP+N+LFDP+DP  APAALFKTERGGEATWHGPGQLVAYP+LDL+HY+QDLHWYLRALEEVVI+TLAPLG+ GGREEGLTGVWVEG KVAAVGVKVKRW+TMHGVALN+DP M+YF+HIVPCGIGDRPVGS+   W+ +     + V++V  LM +AFE+VFGV L
Sbjct:   36 FINAFPTIPPP-PSTRLSDALSFSPLPSHARDPVLLHDWSDRLTPYQDAWDTQHRLVDGKLASLADS--------SHGKAAFDSLLLVQHPPTYTLGTGSTPSNILFDPNDPQNAPAALFKTERGGEATWHGPGQLVAYPVLDLRHYKQDLHWYLRALEEVVIRTLAPLGVRGGREEGLTGVWVEGRKVAAVGVKVKRWITMHGVALNIDPPMEYFRHIVPCGIGDRPVGSLQEAWERQGKTGKLQVQDVTPLMVKAFEEVFGVAL 292
The following BLAST results are available for this feature:
BLAST of NO01G00460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28973.17.100e-10169.17lipoate-protein ligase b [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00460NO01G00460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00460.1NO01G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00460.1.cds1NO01G00460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00460.1 ID=NO01G00460.1|Name=NO01G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGGCCAGGAGCCTTAACAGACGCACATGCCAACGGGCACCACCCCCCTC
TCTGCCTCTCTTCATCTACATTTACTACTCCCTGCTATCCCTCCTTCTTT
TCCTTCACCATCCTATTCCCGTTTCAACCTTTTCCTCCGCCTCTCCGTCA
TCTCCTTCCGCGTCTCCAGCCTCCCGTCTCCCTCCTACCTTCGACCCTCT
CGCCTCTTTTCACCGCGACCCCGTCGTTTTGCACGACTGGTCCGATCGCC
TCACCTCTTATCAAGACGCGTGGGACATTCAACATCGGCTCGTTGAAGCC
AAACTCGCCTCCCTCTCATCCACAGTTACCAGCAGCAGCAGCAGCATGAA
TTCTGTGCAAGCATCGCCTGACCGTCTCTTGCTTCTGCAACATCCTCCGA
CCTACACCCTGGGCACGGGTAGCACGCCCACCAATCTTCTTTTTGATCCT
TCCGATCCTTCCACCGCACCGGCTGCGCTGTTCAAGACAGAACGAGGCGG
GGAAGCAACGTGGCATGGACCAGGGCAACTGGTCGCCTACCCACTCTTAG
ATCTCAAACATTACCGACAGGACTTGCATTGGTATCTAAGGGCGCTGGAA
GAGGTGGTAATTCAGACACTAGCCCCTTTGGGCATCGAGGGTGGGAGGGA
GGAGGGACTGACGGGTGTTTGGGTTGAGGGGCATAAGGTGGCGGCGGTCG
GCGTGAAGGTCAAGCGGTGGGTGACTATGCATGGGGTGGCCCTGAATGTG
GATCCCTCCATGGACTATTTTAAGCACATTGTGCCATGTGGTATTGGGGA
TCGGCCTGTAGGCTCGGTAATGAACTTTTGGAAAGGGGAATCCGGCAAGG
AGGTTATAACGGTTGAGGAGGTGGCGTTGTTGATGAAACGCGCTTTCGAG
GACGTATTTGGGGTTGTTTTGGTTGACGCGGAACATAGTGGCGAAGAAAA
CTAG
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protein sequence of NO01G00460.1

>NO01G00460.1-protein ID=NO01G00460.1-protein|Name=NO01G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MARSLNRRTCQRAPPPSLPLFIYIYYSLLSLLLFLHHPIPVSTFSSASPS
SPSASPASRLPPTFDPLASFHRDPVVLHDWSDRLTSYQDAWDIQHRLVEA
KLASLSSTVTSSSSSMNSVQASPDRLLLLQHPPTYTLGTGSTPTNLLFDP
SDPSTAPAALFKTERGGEATWHGPGQLVAYPLLDLKHYRQDLHWYLRALE
EVVIQTLAPLGIEGGREEGLTGVWVEGHKVAAVGVKVKRWVTMHGVALNV
DPSMDYFKHIVPCGIGDRPVGSVMNFWKGESGKEVITVEEVALLMKRAFE
DVFGVVLVDAEHSGEEN*
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mRNA from alignment at chr1:124465..125418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00460.1 ID=NO01G00460.1|Name=NO01G00460.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at chr1:124465..125418+ (Nannochloropsis oceanica)
ATGGCCAGGAGCCTTAACAGACGCACATGCCAACGGGCACCACCCCCCTC
TCTGCCTCTCTTCATCTACATTTACTACTCCCTGCTATCCCTCCTTCTTT
TCCTTCACCATCCTATTCCCGTTTCAACCTTTTCCTCCGCCTCTCCGTCA
TCTCCTTCCGCGTCTCCAGCCTCCCGTCTCCCTCCTACCTTCGACCCTCT
CGCCTCTTTTCACCGCGACCCCGTCGTTTTGCACGACTGGTCCGATCGCC
TCACCTCTTATCAAGACGCGTGGGACATTCAACATCGGCTCGTTGAAGCC
AAACTCGCCTCCCTCTCATCCACAGTTACCAGCAGCAGCAGCAGCATGAA
TTCTGTGCAAGCATCGCCTGACCGTCTCTTGCTTCTGCAACATCCTCCGA
CCTACACCCTGGGCACGGGTAGCACGCCCACCAATCTTCTTTTTGATCCT
TCCGATCCTTCCACCGCACCGGCTGCGCTGTTCAAGACAGAACGAGGCGG
GGAAGCAACGTGGCATGGACCAGGGCAACTGGTCGCCTACCCACTCTTAG
ATCTCAAACATTACCGACAGGACTTGCATTGGTATCTAAGGGCGCTGGAA
GAGGTGGTAATTCAGACACTAGCCCCTTTGGGCATCGAGGGTGGGAGGGA
GGAGGGACTGACGGGTGTTTGGGTTGAGGGGCATAAGGTGGCGGCGGTCG
GCGTGAAGGTCAAGCGGTGGGTGACTATGCATGGGGTGGCCCTGAATGTG
GATCCCTCCATGGACTATTTTAAGCACATTGTGCCATGTGGTATTGGGGA
TCGGCCTGTAGGCTCGGTAATGAACTTTTGGAAAGGGGAATCCGGCAAGG
AGGTTATAACGGTTGAGGAGGTGGCGTTGTTGATGAAACGCGCTTTCGAG
GACGTATTTGGGGTTGTTTTGGTTGACGCGGAACATAGTGGCGAAGAAAA
CTAG
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Coding sequence (CDS) from alignment at chr1:124465..125418+

>NO01G00460.1 ID=NO01G00460.1|Name=NO01G00460.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr1:124465..125418+ (Nannochloropsis oceanica)
ATGGCCAGGAGCCTTAACAGACGCACATGCCAACGGGCACCACCCCCCTC
TCTGCCTCTCTTCATCTACATTTACTACTCCCTGCTATCCCTCCTTCTTT
TCCTTCACCATCCTATTCCCGTTTCAACCTTTTCCTCCGCCTCTCCGTCA
TCTCCTTCCGCGTCTCCAGCCTCCCGTCTCCCTCCTACCTTCGACCCTCT
CGCCTCTTTTCACCGCGACCCCGTCGTTTTGCACGACTGGTCCGATCGCC
TCACCTCTTATCAAGACGCGTGGGACATTCAACATCGGCTCGTTGAAGCC
AAACTCGCCTCCCTCTCATCCACAGTTACCAGCAGCAGCAGCAGCATGAA
TTCTGTGCAAGCATCGCCTGACCGTCTCTTGCTTCTGCAACATCCTCCGA
CCTACACCCTGGGCACGGGTAGCACGCCCACCAATCTTCTTTTTGATCCT
TCCGATCCTTCCACCGCACCGGCTGCGCTGTTCAAGACAGAACGAGGCGG
GGAAGCAACGTGGCATGGACCAGGGCAACTGGTCGCCTACCCACTCTTAG
ATCTCAAACATTACCGACAGGACTTGCATTGGTATCTAAGGGCGCTGGAA
GAGGTGGTAATTCAGACACTAGCCCCTTTGGGCATCGAGGGTGGGAGGGA
GGAGGGACTGACGGGTGTTTGGGTTGAGGGGCATAAGGTGGCGGCGGTCG
GCGTGAAGGTCAAGCGGTGGGTGACTATGCATGGGGTGGCCCTGAATGTG
GATCCCTCCATGGACTATTTTAAGCACATTGTGCCATGTGGTATTGGGGA
TCGGCCTGTAGGCTCGGTAATGAACTTTTGGAAAGGGGAATCCGGCAAGG
AGGTTATAACGGTTGAGGAGGTGGCGTTGTTGATGAAACGCGCTTTCGAG
GACGTATTTGGGGTTGTTTTGGTTGACGCGGAACATAGTGGCGAAGAAAA
CTAG
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Synonyms
Publications