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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:118479..122333 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G00440.1 vs.
Match: ETK87370.1 (hypothetical protein L915_08197 [Phytophthora parasitica]; ETL40787.1 hypothetical protein L916_08121 [Phytophthora parasitica]; ETP45270.1 hypothetical protein F442_08307 [Phytophthora parasitica P10297]) HSP 1 Score: 473.8 bits (1218), Expect = 7.300e-130 Identity = 254/491 (51.73%), Postives = 336/491 (68.43%), Query Frame = 0
Query: 55 KDNLRFEDPYEDEFEEESQDEMEDVVELDSDEEDEMDVEALKAARTGHDDEDDMDTEDAATRAAPAVYLPGMESGLDEGEELVYDPSAYLMYHGLTPEWPCLSFDIVRDPLGGGRTRYPVTMYAVCGTQANAREKNKLTLMKLSQMHKTYKKPKHADSDSGSDEDSDEESDDDEEEGNGRHVDPLLEQCSIDHRGGVNRLRAMPQQSSIVATWADTAHVHLWDIASLIRAVDSPSTATNDAVVRSPLLSYAGHKDEGWAMDWSSVSRGRLVTGDNRGDIHLWEGGEAGQWAIPDSKSPYRGHGSSVEDLQWSPTEASVFISASSDKTLRVWDVRNKKGCMLSVPAHATDVNVCSWNRNVAYLVVTGADDGSFKVWDLRQFSPSKKEATPIAHFTWHKGPITSIAWHPQDESILACASEDDTVSIWDLSVEEDEDEA---KKPSALPLTHLPPQLLFVHQGQQEIKEVLFHPQVPGLLMTTAADGFNVFQPA 543
+++L FEDP+ D+ E+E +++E D DEE +D EA A D + DMD ++ A + V++PG++ L + E L YD SAY MY+ +T EWP LS D+VRD LG R+R+P+T++ V GTQA + N++T+MK+S++HKT KH D GSD + D+ D+DE EG DP+LE SI H GGVNR+R MPQ S+IVATW+D VHLWDIA + ++D + A A ++P+ +++GH DEG+AMDWS V GRLVTGD I+LW E G W++ K P+ GH SSVEDLQWSPTEASVF S SSD+T+R+WD R K G ML V AH DVNV +WNRNVAYL+ +G+DDGSFK+WDLR F K P+AHF +H P+TSI WHP DES+LA + D+ +S+WD+SVEED + A + + LPPQLLF+HQGQ +IKE+ FHPQ PG+LM+TA DGFNVF+PA
Sbjct: 27 EEDLVFEDPFGDDMEDE------EMIESDGDEEI-VDGEASSA-----DKDVDMDGDEQAEKQVKKVFMPGVDK-LQDDEVLDYDSSAYDMYYAMTAEWPALSIDVVRDNLGAVRSRFPMTVFMVAGTQATNADDNQITVMKMSELHKT----KHND---GSDSEDDDSDDEDETEG-----DPVLESRSIPHPGGVNRIRCMPQSSNIVATWSDRKKVHLWDIAKQLESLDGKAGAPLPAK-QAPVYTFSGHADEGFAMDWSPVQAGRLVTGDCSKFIYLWANSE-GAWSV--DKVPFTGHKSSVEDLQWSPTEASVFASCSSDRTVRIWDTRRKAGSMLDVTAHDDDVNVITWNRNVAYLLASGSDDGSFKIWDLRNF----KADNPVAHFRYHTAPVTSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAVPVQGENGEAKLDLPPQLLFIHQGQTDIKELHFHPQCPGVLMSTAGDGFNVFKPA 484
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G00440.1 ID=NO01G00440.1|Name=NO01G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp ATGGCCAAGGGCAGTAGTAATGACAGCAAGAAAATGATGCTATCGTCTGG TGGGGAAGGCGGGAAGCGGGGGCGTGGAAGGGAAGAGGAAGAGCAGGCAC CAGCACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAAGAGGAAGC AACAAGGAGACTAAGGATAATTTGCGGTTCGAAGATCCGTACGAAGACGA GTTCGAAGAAGAATCTCAGGATGAGATGGAGGATGTAGTGGAGCTGGATT CTGACGAGGAGGACGAGATGGATGTGGAGGCCTTGAAAGCCGCCCGGACA GGCCACGACGACGAGGATGACATGGACACGGAGGATGCCGCCACTCGCGC TGCACCCGCGGTGTATCTACCCGGAATGGAGAGCGGGCTGGACGAGGGGG AGGAGTTGGTCTATGACCCGAGTGCGTACCTGATGTATCACGGCCTGACG CCGGAGTGGCCCTGTCTAAGTTTTGACATTGTGCGGGATCCGCTGGGTGG AGGGCGCACGCGATACCCCGTGACCATGTACGCTGTCTGTGGCACGCAGG CCAATGCTCGGGAGAAGAACAAACTCACCTTGATGAAGCTAAGCCAGATG CACAAGACTTACAAGAAGCCCAAGCACGCCGACTCCGACAGCGGGAGTGA CGAGGACAGTGATGAGGAGAGTGATGATGACGAGGAAGAGGGAAACGGCC GGCATGTGGACCCATTGCTCGAGCAGTGCAGCATTGACCACCGCGGCGGG GTCAATCGTCTGCGAGCCATGCCCCAGCAGTCGTCCATCGTCGCGACATG GGCCGACACGGCCCATGTGCACCTGTGGGACATCGCTTCCCTCATCCGTG CCGTCGACAGCCCCTCCACTGCCACCAACGACGCCGTGGTGCGATCCCCT CTCCTCTCGTATGCGGGGCATAAAGACGAGGGGTGGGCGATGGACTGGTC ATCCGTGAGCAGGGGCAGGTTGGTGACGGGCGACAACAGGGGAGATATTC ACTTGTGGGAGGGCGGGGAAGCGGGCCAGTGGGCGATACCTGACAGCAAG TCTCCCTATCGAGGGCACGGGTCGTCCGTCGAGGACCTGCAGTGGAGTCC GACAGAGGCCTCGGTCTTCATCTCCGCCTCCTCCGACAAGACCCTCCGCG TGTGGGATGTGCGCAACAAGAAGGGATGCATGCTCTCCGTCCCCGCCCAC GCCACCGACGTCAATGTCTGCTCCTGGAATCGCAATGTTGCCTATCTTGT CGTTACAGGTGCCGACGACGGATCGTTTAAAGTGTGGGATTTAAGACAGT TTTCCCCCTCCAAGAAAGAGGCCACACCCATCGCGCATTTCACATGGCAC AAAGGCCCCATCACCTCCATCGCTTGGCACCCGCAAGACGAGTCCATCCT GGCCTGCGCCTCCGAAGACGACACGGTCTCCATATGGGATTTGTCGGTGG AGGAGGACGAGGACGAGGCCAAGAAGCCTTCCGCCCTCCCCCTCACCCAC CTCCCTCCGCAGCTCCTCTTCGTGCACCAGGGCCAACAAGAAATCAAAGA GGTGTTGTTCCACCCGCAGGTGCCAGGCCTGCTGATGACAACAGCCGCCG ACGGATTTAACGTCTTCCAGCCCGCCATCGGGCTCTAG back to topprotein sequence of NO01G00440.1 >NO01G00440.1-protein ID=NO01G00440.1-protein|Name=NO01G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=546bp MAKGSSNDSKKMMLSSGGEGGKRGRGREEEEQAPARGGGGGGGGGGGRGS NKETKDNLRFEDPYEDEFEEESQDEMEDVVELDSDEEDEMDVEALKAART GHDDEDDMDTEDAATRAAPAVYLPGMESGLDEGEELVYDPSAYLMYHGLT PEWPCLSFDIVRDPLGGGRTRYPVTMYAVCGTQANAREKNKLTLMKLSQM HKTYKKPKHADSDSGSDEDSDEESDDDEEEGNGRHVDPLLEQCSIDHRGG VNRLRAMPQQSSIVATWADTAHVHLWDIASLIRAVDSPSTATNDAVVRSP LLSYAGHKDEGWAMDWSSVSRGRLVTGDNRGDIHLWEGGEAGQWAIPDSK SPYRGHGSSVEDLQWSPTEASVFISASSDKTLRVWDVRNKKGCMLSVPAH ATDVNVCSWNRNVAYLVVTGADDGSFKVWDLRQFSPSKKEATPIAHFTWH KGPITSIAWHPQDESILACASEDDTVSIWDLSVEEDEDEAKKPSALPLTH LPPQLLFVHQGQQEIKEVLFHPQVPGLLMTTAADGFNVFQPAIGL* back to topmRNA from alignment at chr1:118479..122333+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G00440.1 ID=NO01G00440.1|Name=NO01G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=3855bp|location=Sequence derived from alignment at chr1:118479..122333+ (Nannochloropsis oceanica) ATGGCCAAGGGCAGTAGTAATGACAGCAAGAAAATGATGCTATCGTCTGG
TGGGGAAGGCGGGAAGCGGGGGCGTGGAAGGGAAGAGGAAGAGCAGGCAC
CAGCACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAAGAGGAAGC
AACAAGGAGACTAAGGATAATTTGCGGTTCGAAGATCCGTACGAAGACGA
GTTCGAAGAAGAATCTCAGGATGAGATGGAGGATGTAGTGGAGCTGGATT
CTGACGAGGAGGACGAGATGGATGTGGAGGCCTTGAAAGCCGCCCGGACA
GGTACAGCGTGGGAATGAAGGGAGGGATAGAGGGGAAAGGAGTCTGTGGA
TAGACAAGATCATTTCCTTGGACATCAAAATAGCCTATGATGCTGCATAA
CCTATATGCTTCCTCCGAGAATTTCTCCTCCTCCCCAAATACTCTCACAC
ACCAATCCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCTCTTCC
TCCCTTCCTCCCTTCCTCAAAAGGCCACGACGACGAGGATGACATGGACA
CGGAGGATGCCGCCACTCGCGCTGCACCCGCGGTGTATCTACCCGGAATG
GAGAGCGGGCTGGACGAGGGGGAGGAGTTGGTCTATGACCCGAGTGCGTA
CCTGATGTACGTGGAGGAAGGAAGGAGGGAGGCTGGGAGGGAGGGAGAGA
GGGAGGGAGGGAGCATGGAGTTGCCAGCGGACTCACCAATAAACACACCC
TATTTTCAGTCTCGTACATCCCCCCCTCCTTTTTGGTAGACATACACACC
CATTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTTCTGTCCCTCCGTCCC
TCTGTCCCTCCGTCCCTTCATCCCTTCCTTTGACCCATGCGTAGGTATCA
CGGCCTGACGCCGGAGTGGCCCTGTCTAAGTTTTGACATTGTGCGGGATC
CGCTGGGTGGAGGGCGCACGCGGTAAGCAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGATGATGATGATGATGGTGGTGATGATGATGGTA
ATGAGGAGGAGTGGAAAAGGAGGGGTAGATGCGCAGAGGAGAGAGATCAT
GGACGCATTCAATTGGCGTTGATGCCTTCAAAACCGACCCTCCCTCCCTC
CTTCCTTCCTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCACCCGCCCTCTATC
AGATACCCCGTGACCATGTACGCTGTCTGTGGCACGCAGGCCAATGCTCG
GGAGAAGAACAAACTCACCTTGATGAAGCTAAGCCAGATGCACAAGACTT
ACAAGAAGCCCAAGCACGCCGACTCCGACAGCGGGAGTGACGAGGACAGT
GATGAGGAGAGTGATGATGACGAGGAAGAGGGAAACGGCCGGCATGTGGA
CCCATTGCTCGAGCAGTGCAGCATTGACCACCGCGGCGGGTAGGTGCCGT
CCCTCCTTCCCTCCTTCCTTTCCTCCCTCCCTCCCACCTCTCCCGCGTCT
CACTTCCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCTTCCT
CCCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGGTCAAT
CGTCTGCGAGCCATGCCCCAGCAGTCGTCCATCGTCGCGACATGGGCCGA
CACGGCCCATGTGCACCTGTGGGACATCGCTTCCCTCATCCGTGCCGTCG
ACAGCCCCTCCACTGCCACCAACGGTAGGTCTTCCCTCCCTTCCTCCCTC
TTTCGAAATGTCTCCCTTCCTGTGTCGCAGCGGCACCGTGACTAACGCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
TCCCTCCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTTCCTCCATCCCTCCCTCCCTCCCTCCCCCAGACGCCGTGGTGCGATCC
CCTCTCCTCTCGTATGCGGGGCATAAAGACGAGGGGTGGGCGATGGACTG
GTCATCCGTGAGCAGGGGCAGGTTGGTGACGGGCGACAACAGGGGAGATA
TTCACTTGTGGGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GACACATGACCAGGGGATGATCCCACCACAATAATCGCCGCTCATTCGCA
TTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCTCCTCCCTTCTATCCT
CCAGGGCGGGGAAGCGGGCCAGTGGGCGATACCTGACAGCAAGTCTCCCT
ATCGAGGGCACGGGTCGTCCGTCGAGGACCTGCAGTGGAGTCCGACAGAG
GCCTCGGGTAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCGTAGC
TTCACGGTGTGGTCTTGTTCGACTCGATCTTTCACCACACAGGCTCACCT
CCCTCCCTCCCTCCCTCCCTCCCTCCAGTCTTCATCTCCGCCTCCTCCGA
CAAGACCCTCCGCGTGTGGGATGTGCGCAACAAGAAGGGATGCATGCTCT
CCGTCCCCGCCCACGCCACCGACGTCAATGTCTGCTCCTGGAATCGGTAC
AGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGTCGGGTCCACTG
TCCCATTCTCCTACAACCGCTCACATTCACCCTCCCTCCCTCCCTTCCTA
TAGCAATGTTGCCTATCTTGTCGTTACAGGTGCCGACGACGGATCGTTTA
AAGTGTGGGATTTAAGACAGTTTTCCCCCTCCAAGAAAGAGGCCACACCC
ATCGCGCATTTCACATGGCACAAAGGTAAGGAAGGAAGGAGGGAGGGAGG
GAGGGAGGGAGGAAGGGAGGGAAGGAGGGGAGGAGGGAAGAAGGGACAGG
AAGCTGAACAAATCTCGCGCGGAACTCACCGTGTGGGTCTTCCCTCCCTC
CCTCTCTCCCTCCCTCCCTCTCTCCCTCTCTCCCTCCCTCCCTCTCTCCC
TCTCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAG
GCCCCATCACCTCCATCGCTTGGCACCCGCAAGACGAGTCCATCCTGGCC
TGCGCCTCCGAAGACGACACGGTACGTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTTCCCTCCTTCCCTCCCTCCCCTCCCTCCTTCCCTCCTTCCCT
CCCTCCCTCCCTCCCTCCCCCCCCCCTTGTCCCTCTACTCAGTCTCCCCT
TCCATCAATTTGGCTTCGTTCTCACTTTCCCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCGTCCTGCCCAGGTCTCCATATGGGATTTGTCG
GTGGAGGAGGACGAGGACGAGGCCAAGAAGCCTTCCGCCCTCCCCCTCAC
CCACCTCCCTCCGCAGCTCCTCTTCGTGCACCAGGGCCAACAAGAAATCA
AAGAGGTGTTGTTCCACCCGCAGGTAGGAAGCGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAAGGAGGGTTGACCCTGTATGCAGCCAGTATACTT
CCTTCTTCTACATTGCTTTATGACCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGTGTAGGTGCCAGGCCTGCT
GATGACAACAGCCGCCGACGGATTTAACGTCTTCCAGCCCGCCATCGGGC
TCTAG back to topCoding sequence (CDS) from alignment at chr1:118479..122333+ >NO01G00440.1 ID=NO01G00440.1|Name=NO01G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at chr1:118479..122333+ (Nannochloropsis oceanica) ATGGCCAAGGGCAGTAGTAATGACAGCAAGAAAATGATGCTATCGTCTGG TGGGGAAGGCGGGAAGCGGGGGCGTGGAAGGGAAGAGGAAGAGCAGGCAC CAGCACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAAGAGGAAGC AACAAGGAGACTAAGGATAATTTGCGGTTCGAAGATCCGTACGAAGACGA GTTCGAAGAAGAATCTCAGGATGAGATGGAGGATGTAGTGGAGCTGGATT CTGACGAGGAGGACGAGATGGATGTGGAGGCCTTGAAAGCCGCCCGGACA GGCCACGACGACGAGGATGACATGGACACGGAGGATGCCGCCACTCGCGC TGCACCCGCGGTGTATCTACCCGGAATGGAGAGCGGGCTGGACGAGGGGG AGGAGTTGGTCTATGACCCGAGTGCGTACCTGATGTATCACGGCCTGACG CCGGAGTGGCCCTGTCTAAGTTTTGACATTGTGCGGGATCCGCTGGGTGG AGGGCGCACGCGATACCCCGTGACCATGTACGCTGTCTGTGGCACGCAGG CCAATGCTCGGGAGAAGAACAAACTCACCTTGATGAAGCTAAGCCAGATG CACAAGACTTACAAGAAGCCCAAGCACGCCGACTCCGACAGCGGGAGTGA CGAGGACAGTGATGAGGAGAGTGATGATGACGAGGAAGAGGGAAACGGCC GGCATGTGGACCCATTGCTCGAGCAGTGCAGCATTGACCACCGCGGCGGG GTCAATCGTCTGCGAGCCATGCCCCAGCAGTCGTCCATCGTCGCGACATG GGCCGACACGGCCCATGTGCACCTGTGGGACATCGCTTCCCTCATCCGTG CCGTCGACAGCCCCTCCACTGCCACCAACGACGCCGTGGTGCGATCCCCT CTCCTCTCGTATGCGGGGCATAAAGACGAGGGGTGGGCGATGGACTGGTC ATCCGTGAGCAGGGGCAGGTTGGTGACGGGCGACAACAGGGGAGATATTC ACTTGTGGGAGGGCGGGGAAGCGGGCCAGTGGGCGATACCTGACAGCAAG TCTCCCTATCGAGGGCACGGGTCGTCCGTCGAGGACCTGCAGTGGAGTCC GACAGAGGCCTCGGTCTTCATCTCCGCCTCCTCCGACAAGACCCTCCGCG TGTGGGATGTGCGCAACAAGAAGGGATGCATGCTCTCCGTCCCCGCCCAC GCCACCGACGTCAATGTCTGCTCCTGGAATCGCAATGTTGCCTATCTTGT CGTTACAGGTGCCGACGACGGATCGTTTAAAGTGTGGGATTTAAGACAGT TTTCCCCCTCCAAGAAAGAGGCCACACCCATCGCGCATTTCACATGGCAC AAAGGCCCCATCACCTCCATCGCTTGGCACCCGCAAGACGAGTCCATCCT GGCCTGCGCCTCCGAAGACGACACGGTCTCCATATGGGATTTGTCGGTGG AGGAGGACGAGGACGAGGCCAAGAAGCCTTCCGCCCTCCCCCTCACCCAC CTCCCTCCGCAGCTCCTCTTCGTGCACCAGGGCCAACAAGAAATCAAAGA GGTGTTGTTCCACCCGCAGGTGCCAGGCCTGCTGATGACAACAGCCGCCG ACGGATTTAACGTCTTCCAGCCCGCCATCGGGCTCTAG back to top
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