NO01G00430.1, NO01G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G00430.1
Unique NameNO01G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1930
Alignment locationchr1:114443..118430 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:114443..118430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G00430.1 vs.
Match: CBN80033.1 (pyruvate dehydrogenase [Ectocarpus siliculosus])

HSP 1 Score: 531.9 bits (1369), Expect = 1.500e-147
Identity = 265/351 (75.50%), Postives = 307/351 (87.46%), Query Frame = 0 
Query:    5 LSRRSSAAVLATTGRRGMATIEVPVREAINQAIDEEMARDPSVFCLGEEVAQYQGAYKVTKGLYQKYGDKRVIDTPITEMGFAGIAVGAAYKDLRPIVEFMTFNFSLQAIDQVINSGAKQLYMSGGTIPVPVVFRGPNGAAAGVGAQHSQDFASWYSQVPGLKVLSPWSSEDAKGLMKAAIRDNNPVVVLENELLYGVSFPFSDEAQRDDFVLPIGKAKIERAGTDVSIVTFSRMVGYSLEAAKLLEKEGISAEVINLRTLRPLDHKTVIESVKRTSRMVTVEEGWPQCGVGAELCSLVMESEAFDYLDAPPERVTGADVPMPYAINLEKAALPQIDDIVTAVKRTTYRKK 356
            LS  ++AA      +R M TIEV VREAINQ +DEEM RD  VF +GEEVAQYQGAYKVTKGLYQKYG++RVIDTPITEMGF G+A GAAYKDLRP+VEFMTFNFSLQAIDQ++NS AKQLYMS G  PVPVVFRGPNGAA+GVGAQHSQ FA+WYS VP LKV+SPWSSEDAKGL+K+AIRD NPVV LENELLYGV+FP +DEAQ +DFV+PIGKAK+E+ GTDVSIVTFS+MVG SLEAA++L  +GISAEVINLRTLRPLD+ TVI+SV++T+R+VTVEEGWPQ G+GA++ ++V E EAFD+LDAP ERVTGADVPMPYA+NLE+ ALP  +DIV+AV RTTYR K
Sbjct:   13 LSSAAAAAGWRQPAKRSMGTIEVAVREAINQGLDEEMGRDERVFLMGEEVAQYQGAYKVTKGLYQKYGEQRVIDTPITEMGFTGLATGAAYKDLRPVVEFMTFNFSLQAIDQILNSAAKQLYMSAGDCPVPVVFRGPNGAASGVGAQHSQCFAAWYSSVPALKVVSPWSSEDAKGLIKSAIRDPNPVVFLENELLYGVAFPMTDEAQGEDFVIPIGKAKVEQEGTDVSIVTFSKMVGTSLEAAEMLAAQGISAEVINLRTLRPLDYGTVIKSVQKTNRLVTVEEGWPQNGIGADISAVVCE-EAFDHLDAPIERVTGADVPMPYALNLERMALPSKEDIVSAVLRTTYRSK 362
The following BLAST results are available for this feature:
BLAST of NO01G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN80033.11.500e-14775.50pyruvate dehydrogenase [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G00430NO01G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G00430.1NO01G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G00430.1.cds1NO01G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds2NO01G00430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds3NO01G00430.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds4NO01G00430.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds5NO01G00430.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds6NO01G00430.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds7NO01G00430.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds8NO01G00430.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds9NO01G00430.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds10NO01G00430.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G00430.1.cds11NO01G00430.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G00430.1 ID=NO01G00430.1|Name=NO01G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp
GGAGGATACGGAGATGGAAGCTTGGGTTGACGCATTGTTTGTGATAAACA
ACAATGCACAGCGAATTAAAAAGCGGTAACGGGCACCGAATTTCGCCTTC
ATGGTTACGTATGCCAACACTTGTGACCAAGCTGAGTGGGAACCAACCTA
AAGCATGCAAAAAAGGCGCAAATCGACATGGCTGGCCCTTATCCTCCGGC
CCACCAGCGATGGAGATGCAAGCGAGGCGTTACGAGACGCAAGACGGCTA
TAGCCCCGCCCGGGCGGTGACACTGACACCAATACCTAACGCACAAATGT
CCCTCCATACATTTACACAGGGCGCTTTGGACCTAGAGCGAGTAGGGTTA
CTTTGGTTTCATTGGCCTCGTTGTCCTCTTCAGCGCAAGCATCGCTTTCC
CTCTCACGCGGGAGTAAGGAACAAGCGGCAAGCAAGCATCAGGTCTCGCG
AATAGCACTCGACACCACCATCCATCAGCCATAGCCATGCTCTCGCTCTT
ATCAAGACGCAGCTCGGCAGCAGTGTTAGCGACAACGGGGAGAAGAGGCA
TGGCCACGATCGAGGTGCCAGTGCGCGAGGCCATCAACCAGGCGATCGAC
GAGGAGATGGCACGGGACCCTAGTGTCTTTTGTCTTGGGGAGGAAGTAGC
GCAATACCAGGGAGCATACAAGGTGACCAAGGGCCTGTACCAAAAGTACG
GGGATAAACGCGTCATCGACACGCCCATTACTGAGATGGGCTTCGCAGGC
ATTGCCGTCGGCGCGGCTTATAAGGACCTGAGGCCCATCGTGGAGTTTAT
GACCTTTAACTTCTCCCTCCAAGCTATCGACCAGGTCATCAATTCCGGCG
CGAAACAGCTCTACATGTCGGGGGGTACCATTCCGGTTCCTGTCGTTTTC
CGGGGCCCGAACGGCGCGGCTGCTGGTGTGGGGGCCCAGCACTCGCAGGA
TTTCGCCTCCTGGTATTCGCAGGTGCCGGGGTTGAAGGTCCTCTCCCCCT
GGTCTTCAGAGGATGCCAAGGGACTGATGAAGGCGGCCATCCGGGACAAC
AACCCTGTGGTGGTGCTCGAGAACGAGCTGCTCTATGGCGTGTCCTTCCC
CTTCTCCGACGAGGCCCAGAGGGATGACTTCGTGCTGCCCATCGGCAAGG
CGAAGATCGAGCGTGCAGGGACTGACGTGTCGATCGTCACCTTCTCACGC
ATGGTGGGCTACTCCCTCGAAGCGGCCAAGCTGTTGGAGAAGGAGGGTAT
CTCCGCGGAAGTCATCAATCTCCGCACCCTCCGACCGTTGGACCACAAAA
CTGTTATTGAGAGCGTTAAGAGAACCAGTCGCATGGTCACCGTGGAGGAG
GGTTGGCCCCAGTGCGGCGTGGGAGCAGAGTTGTGCTCTTTGGTGATGGA
GAGCGAGGCCTTTGACTACCTGGACGCACCGCCTGAAAGGGTGACGGGCG
CGGACGTGCCCATGCCGTACGCGATCAACCTCGAGAAGGCCGCCCTTCCT
CAAATCGACGACATTGTGACCGCTGTCAAGCGCACCACCTATCGAAAGAA
GAAGTAGACGCAGAGGGAAGGAGGGAGGCTGGGGGGTGGTGAGAGCGTGG
TGTGAGGGTGAACAAAGAGGACGGGGGACAGCCAATGGCGAACGAGGGAG
GGATACAGGAGGGCAGGAAGGTAGGAAGGAAGGGAGGAAGGGGGGGAGGA
AGGGAGAATTTTGCAACCACAGAAAAGAGCAAATGGAGCTTTGCCGTGGA
AGTGTCGGTCCACACACCAGGGGGAAAATAAAAAAGGAGACGAGATAGAG
ATATAGATCGAGGGAAACGGCAAGAGGGGGAAAAAAAAAGACGAGAGGGA
GTCATGAACGACGGATCCCCACCCTTCAAAAAAGCGGTAGAAAGAAACGA
GGGAAAAAAGGCTCAACGGAAAAAATGTGA
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protein sequence of NO01G00430.1

>NO01G00430.1-protein ID=NO01G00430.1-protein|Name=NO01G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MLSLLSRRSSAAVLATTGRRGMATIEVPVREAINQAIDEEMARDPSVFCL
GEEVAQYQGAYKVTKGLYQKYGDKRVIDTPITEMGFAGIAVGAAYKDLRP
IVEFMTFNFSLQAIDQVINSGAKQLYMSGGTIPVPVVFRGPNGAAAGVGA
QHSQDFASWYSQVPGLKVLSPWSSEDAKGLMKAAIRDNNPVVVLENELLY
GVSFPFSDEAQRDDFVLPIGKAKIERAGTDVSIVTFSRMVGYSLEAAKLL
EKEGISAEVINLRTLRPLDHKTVIESVKRTSRMVTVEEGWPQCGVGAELC
SLVMESEAFDYLDAPPERVTGADVPMPYAINLEKAALPQIDDIVTAVKRT
TYRKKK*
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mRNA from alignment at chr1:114443..118430-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G00430.1 ID=NO01G00430.1|Name=NO01G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=3988bp|location=Sequence derived from alignment at chr1:114443..118430- (Nannochloropsis oceanica)
GGAGGATACGGAGATGGAAGCTTGGGTTGACGCATTGTTTGTGATAAACA
ACAATGCACAGCGAATTAAAAAGCGGTAACGGGCACCGAATTTCGCCTTC
ATGGTTACGTATGCCAACACTTGTGACCAAGCTGAGTGGGAACCAACCTA
AAGCATGCAAAAAAGGCGCAAATCGACATGGCTGGCCCTTATCCTCCGGC
CCACCAGCGATGGAGATGCAAGCGAGGCGTTACGAGACGCAAGACGGCTA
TAGCCCCGCCCGGGCGGTGACACTGACACCAATACCTAACGCACAAATGT
CCCTCCATACATTTACACAGGGCGCTTTGGACCTAGAGCGAGTAGGGTTA
CTTTGGTTTCATTGGCCTCGTTGTCCTCTTCAGCGCAAGCATCGCTTTCC
CTCTCACGCGGGAGTAAGGAACAAGCGGCAAGCAAGCATCAGGTCTCGCG
AATAGCACTCGACACCACCATCCATCAGCCATAGCCATGCTCTCGCTCTT
ATCAAGACGCAGCTCGGCAGCAGTGTTAGCGACAACGGGGAGAAGAGGCA
TGGCCACGATCGAGGTAAAGGGTAAAGGGCGGAGGAAGCCAGGGAGGGCA
AGATCGTGGTGTGCATACAGGGATGAGGGGGGAGATGATGACCAAGGGGA
AGGAGGGGAGGGCATGGCATGCTAACAGCCGCGTCAAACTGTATGGGTAT
TGCTGAATATGTGCTTTAAATCTTGTAGTAGCGAACTTGTTGTGTGCATC
GCCTTGTCAGTCTCAGTCATCCATCTCATCTACTCCCCTCCCTCCCGCCC
TCCCTCCCGCCCTCCCTCCCCTCCCTCCTTCCCTCCCTAAGGTGCCAGTG
CGCGAGGCCATCAACCAGGCGATCGACGAGGAGATGGCACGGGACCCTAG
TGTCTTTTGTCTTGGGGAGGAAGTAGCGCAATACCAGGGAGCATACAAGG
TATAAGCGTCGGGAGGGAGTGGGGGCGGGGGGAGAGAGGGAGGGAAGGAG
GGAAATAGGAAGGAAATAGTCATAGGAAGCGAGGCATTGAGACCCACCAG
AACGTACCGACTCGCCATATCCCGCACCTTGCCACATCTTCATCCTTCTC
CTTTCCCTTTCTCTTTCCATTCCCTCCTTTCTCGTCCTCCCGACCTCTCA
GGTGACCAAGGGCCTGTACCAAAAGTACGGGGATAAACGCGTCATCGACA
CGCCCATTACTGAGATGGGCTTCGCAGGCATTGCCGTCGGTAAGTGGGAT
CTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCTCTCCGTTTCC
TTTCCTCTTTCCTTTCGTCTCCCTCCCTCCTTCCATGTTTTTCCACTCAT
TTTCCCTTTCCTTCTTCTCCCCCTTTAAAGTCGTGGCTCTTTGTTTCACA
TTCGCGCATGAACCGTCCGGTGTCGTTCTTTTTGTTCACCCCTCCCTTCT
TCCCTCTCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCTCCCCCCCTCAG
GCGCGGCTTATAAGGACCTGAGGCCCATCGTGGAGTTTATGACCTTTAAC
TTCTCCCTCCAAGCTATCGACCAGGTAGGGATGGAGGGAGGGACGGAGGA
AGGGACGGAGGGAGGGTCCGTTCCGAGCGGTTGAAAGAAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGGTGAACAAAAAGAGCGACACAGGACGGGTC
ATGCGTGAAGGTAAAGCCACGGCTCATAAGGGGGAGAAAACGAAAAGGGA
GAATGGTGGGAAAATATGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGG
GAGGGGTCAAGGAAATGCGGAGCCTGTCGATCCCTGGATTCCTCGCACCC
ACCCTTCCCTCCCTCCCTTCCTCCCTCCTCCCTTTCAGGTCATCAATTCC
GGCGCGAAACAGCTCTACATGTCGGGGGGTACCATTCCGGTTCCTGTCGT
TTTCCGGGGCCCGAACGGCGCGGCTGCTGGTGTGGGGGCCCAGCACTCGC
AGGATTTCGCCTCCTGGTATTCGCAGGTGCCGGGGTTGAAGGTGAGGGAG
GGACGGAGGGAGGGGCGGAGGGAGGGGGGATGTTGATCGTGTTTTGTCTG
TCCCCTTGAGTGGTTGAAAAGTTCTCATTGAATCCTCCCTCCCCCCCTCC
CTCCCTCCCTCCCTCCCTTCCCCCCTCCCTCAGGTCCTCTCCCCCTGGTC
TTCAGAGGATGCCAAGGGACTGATGAAGGCGGCCATCCGGGACAACAACC
CTGTGGTGGTGCTCGAGAACGAGCTGCTCTATGTAAGGGAAAGAGGGGGA
GAAGGGGGGGAAGAGGGAGGGAGGGAGGGAGAAGGTGGCATGGCCTTCAC
ACAGAGGGAAAACTGAAGGACGGAAAGCAGGGAGGAGGGGAGGAGGAAAT
GAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAACATGGCCTCCTCTCC
GTCTTGCTCTTGTTTTCTCTGTTTCCTCTCGTTCTCCGCTCCCAATCAAG
AGTTTTCCATACACTCATGTTTTCATACAGAATTATGAATATACACACGT
CTCAAAATGTGCACGCCCTTCCACTCTCATCACGCACAGGGCGTGTCCTT
CCCCTTCTCCGACGAGGCCCAGAGGGATGACTTCGTGCTGCCCATCGGCA
AGGCGAAGGTACGACAAACACCTTCCATCCCTACCTTCCGTCCTTCCGTT
CTCCCTCTTTGTCCCTTGATCCCTCTGCATGCTCCTAACCCTCCCTCCCT
CCCTAGATCGAGCGTGCAGGGACTGACGTGTCGATCGTCACCTTCTCACG
CATGGTGGGCTACTCCCTCGAAGCGGCCAAGCTGTTGGAGAAGGAGGGTA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCAAGGTCCGTCG
GAGCGAAAGGAAGAGGAAGCCTTCATGAGCAGAATCAGTGTGAGTGGCAG
GGAACTCAGCCTCCCCTCCCTCCCTTCTTCAATCCCTCCCTGCCCAGGTA
TCTCCGCGGAAGTCATCAATCTCCGCACCCTCCGACCGTTGGACCACAAA
ACTGTTATTGAGAGCGTTAAGAGAACCAGTCGCATGGTCACCGTGGAGGA
GGGTTGGCCCCAGTGCGGTAGGGAGGGAGGGAAGGAGGGAGGGAGGAAAG
GAGGGAGGGTGGATCTGTCTAATTCTCACACTTTCTTTATGGCTCCTCTC
GTGACTCATACACTTCCTCCCTCCCTCCCTCCTTCCCTCCCTCTGTTACG
CCAGGCGTGGGAGCAGAGTTGTGCTCTTTGGTGATGGAGAGCGAGGCCTT
TGACTACCTGGACGCACCGCCTGAAAGGGTGACGGGTGAGGGAGGGAAGG
AGGGAGGGAGGAAGGGAGGGAGGAAGGGTGATTGGTATATATTGAGGGTA
CAGAGGGATGTGTTAAAATACTGACTGATGTCGCATCATAGCCACACACT
GATACGCCCTCCCTCCCTCCCTTCTTCCCTCCCTCCTTCCCCCTCACCCT
TCCAGGCGCGGACGTGCCCATGCCGTACGCGATCAACCTCGAGAAGGCCG
CCCTTCCTCAAATCGACGACATTGTGACCGCTGTCAAGCGCACCACCTAT
CGAAAGAAGAAGTAGACGCAGAGGGAAGGAGGGAGGCTGGGGGGTGGTGA
GAGCGTGGTGTGAGGGTGAACAAAGAGGACGGGGGACAGCCAATGGCGAA
CGAGGGAGGGATACAGGAGGGCAGGAAGGTAGGAAGGAAGGGAGGAAGGG
GGGGAGGAAGGGAGAATTTTGCAACCACAGAAAAGAGCAAATGGAGCTTT
GCCGTGGAAGTGTCGGTCCACACACCAGGGGGAAAATAAAAAAGGAGACG
AGATAGAGATATAGATCGAGGGAAACGGCAAGAGGGGGAAAAAAAAAGAC
GAGAGGGAGTCATGAACGACGGATCCCCACCCTTCAAAAAAGCGGTAGAA
AGAAACGAGGGAAAAAAGGCTCAACGGAAAAAATGTGA
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Coding sequence (CDS) from alignment at chr1:114443..118430-

>NO01G00430.1 ID=NO01G00430.1|Name=NO01G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at chr1:114443..118430- (Nannochloropsis oceanica)
ATGCTCTCGCTCTTATCAAGACGCAGCTCGGCAGCAGTGTTAGCGACAAC
GGGGAGAAGAGGCATGGCCACGATCGAGGTGCCAGTGCGCGAGGCCATCA
ACCAGGCGATCGACGAGGAGATGGCACGGGACCCTAGTGTCTTTTGTCTT
GGGGAGGAAGTAGCGCAATACCAGGGAGCATACAAGGTGACCAAGGGCCT
GTACCAAAAGTACGGGGATAAACGCGTCATCGACACGCCCATTACTGAGA
TGGGCTTCGCAGGCATTGCCGTCGGCGCGGCTTATAAGGACCTGAGGCCC
ATCGTGGAGTTTATGACCTTTAACTTCTCCCTCCAAGCTATCGACCAGGT
CATCAATTCCGGCGCGAAACAGCTCTACATGTCGGGGGGTACCATTCCGG
TTCCTGTCGTTTTCCGGGGCCCGAACGGCGCGGCTGCTGGTGTGGGGGCC
CAGCACTCGCAGGATTTCGCCTCCTGGTATTCGCAGGTGCCGGGGTTGAA
GGTCCTCTCCCCCTGGTCTTCAGAGGATGCCAAGGGACTGATGAAGGCGG
CCATCCGGGACAACAACCCTGTGGTGGTGCTCGAGAACGAGCTGCTCTAT
GGCGTGTCCTTCCCCTTCTCCGACGAGGCCCAGAGGGATGACTTCGTGCT
GCCCATCGGCAAGGCGAAGATCGAGCGTGCAGGGACTGACGTGTCGATCG
TCACCTTCTCACGCATGGTGGGCTACTCCCTCGAAGCGGCCAAGCTGTTG
GAGAAGGAGGGTATCTCCGCGGAAGTCATCAATCTCCGCACCCTCCGACC
GTTGGACCACAAAACTGTTATTGAGAGCGTTAAGAGAACCAGTCGCATGG
TCACCGTGGAGGAGGGTTGGCCCCAGTGCGGCGTGGGAGCAGAGTTGTGC
TCTTTGGTGATGGAGAGCGAGGCCTTTGACTACCTGGACGCACCGCCTGA
AAGGGTGACGGGCGCGGACGTGCCCATGCCGTACGCGATCAACCTCGAGA
AGGCCGCCCTTCCTCAAATCGACGACATTGTGACCGCTGTCAAGCGCACC
ACCTATCGAAAGAAGAAGTAG
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Synonyms
Publications